Biomedical subjects

Jingyu Wang

Publications and source records attributed to Jingyu Wang.

6 recordsLinked to original sources

PubMed2026

Research on multi-trait genome association study method based on Shannon information entropy.

BACKGROUND: Genetic analysis of complex traits is crucial for elucidating disease mechanisms and biological inheritance processes. However, traditional Genome-wide Association Study (GWAS) for single trait often fail to capture the synergistic effects of genetic loci on multiple traits. METHODS: This study proposes a method for analyzing the association between multiple traits and gene regions based on Shannon information entropy. Innovatively, Shannon information entropy is introduced to integrate gene region information as genetic entropy, thereby constructing an Inverse Shannon Entropy-Multi-Trait Association Analysis of Gene Region genetic model (InvSE-MTAGR). Furthermore, a partial regression test is applied to the model to establish the Inverse Partial Shannon Entropy-Multi-Trait Association Analysis of Gene Region method (InvPSE-MTAGR). When performing multi-trait analysis with InvSE-MTAGR, the method achieved statistical significance by accumulating minor effects, thereby enhancing the ability to identify pleiotropic gene regions. RESULTS: The simulation results showed that the proposed multi-trait gene region association analysis method performed well in terms of both Type I error rate control and statistical power. Leveraging tomato and sorghum datasets for validation, the proposed multi-trait gene region association analysis method based on Shannon information entropy accurately pinpointed most of the gene regions harboring candidate genes. CONCLUSION: The study reveals the advantage of multi-trait method in integrating weak-effect pleiotropic signals and capturing the correlation among traits, which provides an efficient theoretical tool for dynamic analysis of complex multi-trait genetic networks and multi-target collaborative breeding of crops.

Genome-Wide Association Study↗

PubMed2006

[Simultaneous determination of four carotenoids in health products by reversed-phase high performance liquid chromatography].

A method was established for the determination of carotenoids (lutein, zeaxanthin, lycopene, beta-carotene) in health products by reversed-phase high performance liquid chromatography (RP-HPLC). The extraction methods of carotenoids from different types of samples were also established. Separation and quantification was achieved by using a Diamonsil C18 column (250 mm x 4.6 mm i.d., 5 microm), and a mobile phase of acetonitrile and ethyl acetate were used with the following gradient elution: 100% acetonitrile at the first 15 min, then ethyl acetate increased to 100% in the next 10 min, at last 100% acetonitrile for 5 min with a flow rate of 1 mL/min, temperature of 25 degrees C and monitored with a photodiode array detector at 450 nm. The external standard calibration curves were used for quantification. There were good linear correlations for the four carotenoids. The correlation coefficients were between 0.999 4 and 0. 999 7. The detection limits were 0.4-0.5 mg/L. The recoveries of four carotenoids in tablet samples were 95.3%-98.7% with the relative standard deviations (RSDs) of 0.89%-2.0%. The recoveries of four carotenoids in powder samples were 93.7%-98.8% with RSDs of 0.89%-2.8%. The recoveries of four carotenoids in oil samples were 97.1%-99.2% with RSDs of 0.42%-1.2%. This method is simple, fast, accurate and convenient. It can be used as one of the reliable means for quantitative determination of carotenoid in health products.

Carotenoids↗

PubMed2005

The apolipoprotein E gene polymorphism is associated with open angle glaucoma in the Japanese population.

PURPOSE: To assess whether genetic polymorphisms of the apolipoprotein E (APOE) gene are associated with open angle glaucoma (OAG) in the Japanese population. METHODS: Genomic DNA was examined in a cohort of 310 Japanese patients with OAG and 179 control subjects. The average age was 63.5+/-14.4 years (mean+/-SD) for the OAG patients and 65.5+/-11.6 years for the control subjects. The presence or absence of OAG in patients and controls was based on clinical examination and/or ophthalmic records. The APOE allele frequency (epsilon2, epsilon3, and epsilon4 alleles) was studied by restriction fragment length polymorphism, and compared between OAG patients and control subjects. The association between the intraocular pressure (IOP) and the APOE alleles was also evaluated. RESULTS: There was a significant difference in the APOE genotype frequencies between these groups (p=0.0006 chi2 test). The frequencies of the epsilon2 and epsilon4 alleles were significantly lower in the OAG patients (epsilon2: 2.6%; epsilon4: 6.0%) compared to the control subjects (epsilon2: 5.0%, p=0.048; epsilon4: 10.6%, p=0.012; Fisher's exact test). The frequency of the epsilon3 allele was significantly higher in the OAG patients (91.4%) compared to the control subjects (84.4%, p=0.0010; Fisher's exact test). Adjusted for age, gender, and IOP, an appropriate three fold reduction in OAG risk (odds ratio [OR] 0.29, 95% confidence interval [CI] 0.10 to 0.80; p=0.018) was found with the epsilon2 allele and a two fold increased risk of OAG (OR 1.97, 95% CI 1.06 to 3.67; p=0.033) was found with the epsilon3 allele. The maximum IOP (18.3+/-6.0 mm Hg) in patients with the epsilon4 allele was significantly lower than that (21.3+/-9.1 mm Hg) in patients without the epsilon4 allele (p=0.006, Student's t-test). CONCLUSIONS: The APOE gene polymorphism is associated with OAG in the Japanese population. Further studies in the other ethnic populations should be performed to elucidate the relationship between APOE and OAG.

Aged↗

PubMed2005

Experimental study of excitability and autorhthmicity in urinary bladder detrusor of diabetes rats.

The changes in excitability and autorhthmicity of bladder detrusor in experimental non-insulin dependent diabetes mellitus (NIDDM) rats were observed. Sixty-nine NIDDM rats as NIDDM group and 69 normal rats as control group were enrolled into this experimental study. At 6th, 10th, 14th, 18th, 22nd and 26th week after the rats were injected last time, the changes in the excitability and autorhthmicity of detrusor strips in vitro were observed. The results showed that the threshold of the tension which made the detrusor strips contract was significantly higher in NIDDM group (0.716 +/- 0.325 g) than in control group (0.323 +/- 0.177 g) (F = 59.63, P < 0.001). At different stages, the threshold of the tension resulting the contract of the detrusor strips in NIDDM group was also higher than in control group. At 18th week after STZ injection, the frequency of spontaneous contract of the detrusor strips in NIDDM was significantly higher than in control group (P < 0.05), whereas at 22nd week, that in NIDDM group was significantly lower than in control group (P < 0.05). It was concluded that the decreased excitability of the bladder detrusor was the earliest and most obvious changes in bladder function in diabetes rats and the autorhthmicity had also changed at the early stage of diabetic bladder.

Animals↗

PubMed2004

[Determination of trace antimong in cells by hydride generation-atomic fluorescence spectrometry].

An new and simple method to determine the antimony (Sb) in cells using Hydride Generation-Atomic Fluorescence Spectrometry (HG-AFS) was established for studying the mechanism of metal resistance in the protozoan parasite Leishmania. The detection limit was 0.08 microgram/L respectively. The average recoveries at different concentrations were 92.8%-103.6%. This method was simple, precise, reliable. The obtained results were compared with those determined by ICP-MS, and no obvious differences could be observed. This method has been successfully applied to the mechanism study of metal resistance in Leishmania.

Animals↗

PubMed2003

Antimony uptake systems in the protozoan parasite Leishmania and accumulation differences in antimony-resistant parasites.

The first line drug against leishmaniasis consists of pentavalent antimony [Sb(V)], but there is general belief that the active form of the metal is the trivalent form [Sb(III)]. In this study, we have quantified the accumulation of Sb(V) and Sb(III) in Leishmania by using inductively coupled plasma mass spectrometry. The accumulation was studied in three Leishmania species at various life stages, sensitive or resistant to antimony. Both Sb(III) and Sb(V) are accumulated in promastigote and amastigote parasites, but through competition experiments with arsenite, we found that the routes of entry of Sb(V) and Sb(III) are likely to differ in Leishmania. The level of accumulation of either Sb(III) or Sb(V), however, was not correlated with the susceptibility of wild-type Leishmania cells to antimony. This suggests that other factors may also be implicated in the mode of action of the drugs. In contrast to metal susceptibility, resistance to Sb(III) correlated well with decreased antimony accumulation. This phenotype was energy dependent and highlights the importance of transport systems in drug resistance of this protozoan parasite.

2,4-Dinitrophenol↗