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Biomedical subjects

John W Seaman

Publications and source records attributed to John W Seaman.

4 recordsLinked to original sources

Bayesian estimation of intervention effect with pre- and post-misclassified binomial data.

We consider studies in which an enrolled subject tests positive on a fallible test. After an intervention, disease status is re-diagnosed with the same fallible instrument. Potential misclassification in the diagnostic test causes regression to the mean that biases inferences about the true intervention effect. The existing likelihood approach suffers in situations where either sensitivity or specificity is near 1. In such cases, common in many diagnostic tests, confidence interval coverage can often be below nominal for the likelihood approach. Another potential drawback of the maximum likelihood estimator (MLE) method is that it requires validation data to eliminate identification problems. We propose a Bayesian approach that offers improved performance in general, but substantially better performance than the MLE method in the realistic case of a highly accurate diagnostic test. We obtain this superior performance using no more information than that employed in the likelihood method. Our approach is also more flexible, doing without validation data if necessary, but accommodating multiple sources of information, if available, thereby systematically eliminating identification problems. We show via a simulation study that our Bayesian approach outperforms the MLE method, especially when the diagnostic test has high sensitivity, specificity, or both. We also consider a real data example for which the diagnostic test specificity is close to 1 (false positive probability close to 0).

Acoustic Impedance Tests↗

Multiple imputation techniques in small sample clinical trials.

Clinical trials allow researchers to draw conclusions about the effectiveness of a treatment. However, the statistical analysis used to draw these conclusions will inevitably be complicated by the common problem of attrition. Resorting to ad hoc methods such as case deletion or mean imputation can lead to biased results, especially if the amount of missing data is high. Multiple imputation, on the other hand, provides the researcher with an approximate solution that can be generalized to a number of different data sets and statistical problems. Multiple imputation is known to be statistically valid when n is large. However, questions still remain about the validity of multiple imputation for small samples in clinical trials. In this paper we investigate the small-sample performance of several multiple imputation methods, as well as the last observation carried forward method.

Bayes Theorem↗

Bayesian inference for a correlated 2 x 2 table with a structural zero.

We develop a new Bayesian approach to interval estimation for both the risk difference and the risk ratio for a 2 x 2 table with a structural zero using Markov chain Monte Carlo (MCMC) methods. We also derive a normal approximation for the risk difference and a gamma approximation for the risk ratio. We then compare the coverage and interval width of our new intervals to the score-based intervals over various parameter and sample-size configurations. Finally, we consider a Bayesian method for sample-size determination.

Algorithms↗

Bayesian sample-size determination for inference on two binomial populations with no gold standard classifier.

We consider the impact of test properties on the required sample size for the Bayesian design problem for comparing two proportions with error-prone data. Specifically, we examine four cases: a single diagnostic test and two independent diagnostic tests, both when the test properties are identical across populations and when they differ. Interval-based and moment-based sample-size determination criteria are contrasted using Monte Carlo simulation methods. We consider an application in which Strongyloides infections are compared in two populations.

Animals↗