Biomedical subjects

Jon Chorover

Publications and source records attributed to Jon Chorover.

14 recordsLinked to original sources

PubMed2006

ATR-FTIR spectroscopy reveals bond formation during bacterial adhesion to iron oxide.

The contribution of various bacterial surface functional groups to adhesion at hematite and ZnSe surfaces was examined using attenuated total reflectance (ATR) Fourier transform infrared (FTIR) spectroscopy. When live Shewanella oneidensis, Pseudomonas aeruginosa, and Bacillus subtilis cells were introduced to a horizontal hematite (alpha-Fe(2)O(3))-coated internal reflection element (IRE), FTIR peaks emerged corresponding to bacterial phosphate group binding. These IR peaks were not observed when bacteria were introduced to the uncoated ZnSe IRE. When cells were added to colloidal suspensions of alpha-Fe(2)O(3) at pH 7, spectra included peaks corresponding to P-OFe and nu(COOH), the latter being attributed to bridging of carboxylate at mineral surface OH groups. Selected model organic compounds with P-containing functionalities (phenylphosphonic acid [PPA], adenosine 5'-monophosphate [AMP], 2'-deoxyadenyl(3'-->5')-2'-deoxyadenosine [DADA], and deoxyribonucleic acid [DNA]) produce spectra with similar peaks corresponding to P-OFe when adsorbed to alpha-Fe(2)O(3). The data indicate that both terminal phosphate/phosphonate and phosphodiester groups, either exuded from the cell or present as surface biomolecules, are involved in bacterial adhesion to Fe-oxides through formation of innersphere Fe-phosphate/phosphonate complexes.

Adsorption↗

PubMed2006

Colloid mobilization during soil iron redox oscillations.

In redox-dynamic soils, iron reduction-oxidation events may initiate wide shifts in the concentration of colloidal and dissolved material because of either Fe mineral dissolution or pH shifts associated with Fe oxidation state changes. This can have profound effects on the mobilization of organic and metal constituents. We conducted laboratory studies of colloid dynamics in a Hawaiian soil subjected to four consecutive 14-day reduction-oxidation cycles across the "soil-Fe" (Fe(OH)3)/(Fe2+(aq)) equilibrium. Size fractionated samples were isolated by differential centrifugation and characterized based on analysis of the framework and trace elements (Si, C, Fe, Ti, Al, Zr, Nb, La, and U). Intracycle oscillations in all colloidal (3 kDa to 160 nm) elements peaked during the reduction half-cycles, mobilizing 10% of total soil Ti and from 1-5% of total soil Zr, Nb, La, and U at peak dispersion. Colloid dynamics were dependent on pH shifts accompanying the redox oscillations rather than the fluctuating solubility of Fe oxides. TEM/EDS and mass-balance calculations suggest a carbon-based colloid matrix with zones of metal enrichment. The cumulative effects of four redox cycles included an apparent increase in colloid stability. Proton production/consumption associated with Fe-redox cycling has important implications for mobilization colloid-borne trace elements and sorbed contaminants.

Colloids↗

PubMed2006

Strontium speciation during reaction of kaolinite with simulated tank-waste leachate: bulk and microfocused EXAFS analysis.

Radioactive strontium (90Sr) is an important constituent of the complex wastes from past nuclear weapons production and has been stored in underground tanks at U.S. DOE sites (e.g., Hanford, WA). Using bulk and microfocused EXAFS spectroscopy, we examined temporal changes in solid-phase Sr speciation in kaolinite samples reacted for 1-369 d with high-pH, high ionic strength synthetic tank-waste leachate containing Sr(2+) and Cs(+) at 10(-3) mol kg(-1). Analyses of bulk EXAFS spectra showed that Sr initially forms a precipitate by 7 d with a local structure similar to SrCO(3-) (s). At 33 d, microfocused EXAFS of individual particles in one sample revealed a mixture of hydrated and dehydrated Sr associated with neoformed sodalite-type phases. At aging times of 93 d and longer, bulk EXAFS spectra and supporting characterizations indicated nonexchangeable Sr with a local structure consistent with incorporation into increasingly crystalline aluminosilicate particles, particularly sodalite. These experimental studies suggest that irreversible trapping of radionuclides occurs if they are present during the formation and aging of feldspathoid alteration products of local Si-bearing sediment minerals. This may serve as an effective contaminant sequestration mechanism at sites such as Hanford.

Carbonates↗

PubMed2006

Solid-state NMR identification and quantification of newly formed aluminosilicate phases in weathered kaolinite systems.

The weathering of a specimen kaolinite clay was studied over the course of 369 d via solid-state 29Si magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy and high-field 27Al MAS NMR. The chosen baseline solution conditions (0.05 mol kg-1 of Al, 2 mol kg-1 of Na+, 1 mol kg-1 of NO3-, 1 mol kg-1 of OH-, and pH approximately 13.8) approximate those of solutions leaking from waste tanks at the Hanford Site in Richland, WA. Nonradioactive Cs and Sr cations were added to this synthetic tank waste leachate (STWL) solution at concentrations of 10(-3), 10(-4), and 10(-5) molal (m) to represent their radionuclide counterparts. The transformations of silicon- and aluminum-containing solid phase species were monitored quantitatively by using NMR spectroscopy, with the resulting spectra directly reporting the influence of the initial Cs and Sr on formation and transformation of the neo-formed solids. At the lowest concentration of Cs and Sr employed (10(-5) m in each cation) peaks consistent with the formation of zeolite-like minerals were detected via 29Si and 27Al MAS NMR as early as 33 d. At concentrations of 10(-3) m in each cation, new silicon species are not detected until 93 d, although neophases containing four-coordinate aluminum were detectable at earlier reaction times via 27Al MAS NMR. At the highest magnetic field strengths employed in this NMR study, deconvolutions of resonances detected in the tetrahedral region of the 27Al MAS spectra yielded multiple components, indicating the existence of at least four new aluminum-containing phases. Two of these phases are identified as sodalite and cancrinite through comparison with diffuse-reflectance infrared (DRIFT) spectra and powder X-ray diffraction (XRD) results, while a third phase may correlate with a previously detected aluminum-rich chabazite phase. All measurable solid reaction products have been quantified via their 27Al MAS resonances acquired at high magnetic field strengths (17.6 T), and the quantitative nature of the 27Al NMR data shows that cancrinite growth increases while sodalite reaches a steady state with respect to total aluminum in the solid phases. The data also relate the coupling of Cs sorption to the ripening of feldspathoid phases in this heterogeneous system as a function of time, and illustrate the important influence of co-contaminants on the environmental reaction kinetics studied here.

Journal Article↗

PubMed2006

Leachate migration from spent mushroom substrate through intact and repacked subsurface soil columns.

Field weathering of spent mushroom substrate (SMS) produces soluble compost leachate that percolates into underlying soils and may adversely impact groundwater. Laboratory experiments were conducted to investigate movement and retention of SMS leachate solutes in subsurface soil columns. Spent mushroom substrate leachate with high concentrations of dissolved organic matter (DOM) and inorganic salts was passively loaded to intact and repacked columns of Bt1 soil (fine-loamy, mixed, semiactive, mesic Typic Hapludults) and effluents were monitored for changes in chemical composition. Transport of SMS leachate in undisturbed soil cores was mainly via preferential flow, whereas matrix flow was predominant in repacked soil columns. Leachate DOM and phosphate were sorbed by soil minerals while Cl-, SO4(2-), Na+ and NH4+ were eluted. Leachate K+ displaced exchangeable native cations and was retained. Biodegradation of leachate DOM resulted in reduction and elution of soil Mn and Fe, especially in repacked columns. Persistent anoxia also inhibited nitrification. Precipitation of gypsum and CaCO3 blocked preferential flow channels, and movement of SMS leachate was subsequently reduced. The results demonstrate that SMS leachate migrates via rapid preferential flow initially, followed by matrix flow at a lower rate. Leachate solutes may transport to depth in soil profiles through preferential channels. To protect water resources, weathering of deep SMS piles should be conducted on compact surfaces or in fields with a condensed soil layer (no structural cracks) above the groundwater table, and measures controlling leachate runoff be imposed.

Adsorption↗

PubMed2005

Sorption of the antibiotic ofloxacin to mesoporous and nonporous alumina and silica.

Mesoporous and nonporous SiO(2) and Al(2)O(3) adsorbents were reacted with the fluoroquinolone carboxylic acid ofloxacin over a range of pH values (2-10) and initial concentrations (0.03-8 mM) to investigate the effects of adsorbent type and intraparticle mesopores on adsorption/desorption. Maximum ofloxacin adsorption to SiO(2) surfaces occurs slightly below the pK(a2) (pH 8.28) of the antibiotic and sorption diminishes rapidly at pH>pK(a2). For Al(2)O(3), maximum sorption is observed at pH values slightly higher than the adsorbent's point of zero net charge (p.z.n.c.) and less than midway between the pK(a) values of ofloxacin. The effects of pH on adsorption and ATR-FTIR spectra suggest that the zwitterionic compound adsorbs to SiO(2) solids through the protonated N(4) in the piperazinyl group and, possibly, a cation bridge; whereas the antibiotic sorbs to Al(2)O(3) solids through the ketone and carboxylate functional groups via a ligand exchange mechanism. Sorption edge and isotherm experiments show that ofloxacin exhibits a higher affinity for mesoporous SiO(2) and nonporous Al(2)O(3), relative to their counterparts. It is hypothesized that decreased ofloxacin sorption to mesoporous Al(2)O(3) occurs due to electrostatic repulsion within pore confines. In contrast, it appears that the environment within SiO(2) mesopores promotes sorption by inducing formation of ofloxacin-Ca complexes, thus increasing electrostatic attraction to SiO(2) surfaces.

Adsorption↗

PubMed2004

Adhesion of bacterial exopolymers to alpha-FeOOH: inner-sphere complexation of phosphodiester groups.

Extracellular polymeric substances (EPS) constitute a heterogeneous mixture of polyelectrolytes that mediate biomineralization and bacterial adhesion and stabilize biofilm matrixes in natural and artificial environments. Although nucleic acids are exuded extracellularly and are purported to be required for biofilm formation, direct evidence of the active mechanism is lacking. EPS were extracted from both Bacillus subtilis (a gram-positive bacterium) and Pseudomonas aeruginosa (a gram-negative bacterium) and their interaction with the goethite (alpha-FeOOH) surface was studied using attenuated total internal reflection infrared spectroscopy. Correspondence between spectral data and quantum chemical calculations demonstrate that phosphodiester groups of nucleic acids mediate the binding of EPS to mineral surfaces. Our data indicate that these groups emerge from the EPS mixture to form monodentate complexes with Fe centers on the goethite (alpha-FeOOH) surface, providing an energetically stable bond for further EPS or cell adhesion.

Adsorption↗

PubMed2004

Protection of mesopore-adsorbed organic matter from enzymatic degradation.

Synthetic mesoporous alumina and silica minerals with uniform pore geometries, and their nonporous analogues, were used to test the role of mineral mesopores (2-50 nm diameter) in protecting organic matter from enzymatic degradation in soils and sediments. Dihydroxyphenylalanine (L-DOPA), a model humic compound, was irreversibly sorbed to both mineral types. The surface area-normalized adsorption capacity was greater for the mesoporous minerals relative to their nonporous analogues. The degradation kinetics of free and mineral-sorbed L-DOPA by the enzyme laccase was monitored in a closed cell via oxygen electrode. Relative to freely dissolved L-DOPA, nonporous alumina-sorbed substrate was degraded, on average, 90% more slowly and to a lesser extent (93%), likely due to laccase adsorption to alumina. In contrast, relative to free L-DOPA, degradation of nonporous silica-sorbed L-DOPA was enhanced by 20% on average. In the case of mesoporous alumina and silica-sorbed L-DOPA, the enzyme activity was 3-40 times lower than that observed for externally sorbed substrate (i.e., L-DOPA sorbed to nonporous minerals). These results provide strong evidence to support the viability of the mesopore protection mechanism for sequestration and preservation of sedimentary organic matter and organic contaminants. Nanopore adsorption/desorption phenomena may aid in explaining the slow degradation of organic contaminants in certain soils and sediments and may have implications for environmental remediation and biotechnological applications.

Adsorption↗

PubMed2004

Influence of mesoporosity on the sorption of 2,4-dichlorophenoxyacetic acid onto alumina and silica.

Two SiO2 and three Al2O3 adsorbents with varying degrees of mesoporosity (pore diameter 2-50 nm) were reacted with 2,4-dichlorophenoxyacetic acid (2,4-D) at pH 6 to investigate the effects of intraparticle mesopores on adsorption/desorption. Anionic 2,4-D did not adsorb onto either SiO2 solid, presumably because of electrostatic repulsion, but it did adsorb onto positively charged Al2O3 adsorbents, resulting in concave isotherms. The Al2O3 adsorbent of highest mesoporosity consistently adsorbed more 2,4-D per unit surface area than did the nonporous and less mesoporous Al2O3 adsorbents over a range of initial 2,4-D solution concentrations (0.025-2.5 mM) and reaction times (30 min-55 d). Differences in adsorption efficiency were observed despite equivalent surface site densities on the three Al2O3 adsorbents. Hysteresis between the adsorption/desorption isotherms was not observed, indicating that adsorption is reversible. Attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy studies confirm that 2,4-D adsorption does not occur via ligand exchange, but rather via electrostatic interaction. The results indicate that adsorbent intraparticle mesopores can result in consistently greater 2,4-D adsorption, but the amount adsorbed is dependent upon surface charge and the presence of adsorbent mesoporosity. The data also suggest that when mineral pores are significantly larger than the adsorbate, they do not contribute to diffusion-limited adsorption/desorption hysteresis. Adsorbent transformations through time are discussed.

Journal Article↗

PubMed2004

Interaction of phenanthrene and its primary metabolite (1-hydroxy-2-naphthoic acid) with estuarine sediments and humic fractions.

Experiments were conducted to compare the sorption and desorption of phenanthrene and its primary degradation product, 1-hydroxy-2-naphthoic acid (HNA), in estuarine sediment, humic acid (HA) and humin. Ionic composition, ionic strength (0.4 M) and pH (7.6) were employed to mimic native estuarine pore water at the sediment-water interface. Sorption to whole sediment and organic matter (OM) fractions was significantly lower for HNA than for phenanthrene. Whereas HNA did not sorb to HA, uptake to sediment and humin was observed, suggesting that HNA does not bind directly to OM. Phenanthrene uptake was characterized by hysteretic behavior and exhibited slow desorption. In contrast, HNA initially was more readily desorbed from sediment and humic fractions, but a significant fraction was not recovered in repeated desorption runs. The lower sorption of HNA reflects its greater polarity and water solubility, but the consistent retention of a non-desorbing fraction suggests strong binding and/or chemical transformation reactions may be important. It was postulated that abiotic transformation of HNA may occur in estuarine sediments, in part due to the presence of redox active minerals (Fe(III) and Mn(IV) oxides). The presence of Fe and Mn solids in the estuarine sediment was verified by sequential extraction and studies were then conducted to investigate the transformation of HNA in the presence of synthetic goethite (alpha-FeOOH) and birnessite (delta-MnO2) as model solids. Reaction with birnessite led to transformation of all HNA in solution within 24 h and resulted in the formation of partial oxidation products (POPs). Following reaction with goethite, HNA was present in solution and POPs were observed in the weakly bound fraction. This study indicates that degradation products of polycyclic aromatic hydrocarbons (PAHs) may have distinctly different sorption affinities and reactivities toward environmental surfaces than their parent compounds.

Adsorption↗

PubMed2003

Linking cesium and strontium uptake to kaolinite weathering in simulated tank waste leachate.

Weathering behavior of kaolinite was studied in batch systems under geochemical conditions characteristic of tank waste released to the vadose zone at the Hanford Site, WA (0.05 M Al(T), 2 M Na+, 1 M N03-, pH approximately 14, Cs+ and Sr2+ present as co-contaminants). Time series experiments were conducted from 0 to 369 d, with initial Cs+ and Sr2+ concentrations ranging from 10(-5) to 10(-3) M. Dissolution of kaolinite increased soluble Si and Al to maximum levels at 7 d (Cs and Sr concentrations of 10(-5) and 10(-4) M) or 33 d (Cs and Sr concentrations of 10(-3) M). Subsequent precipitation of Si and Al was coupled to the formation of oxalate-extractable solids that incorporated Cs and Sr. Strontium sorption was nearly complete within 24 h for initial Sr concentrations (Sr0) < or = 10(-4) whereas Cs uptake increased over the full year of the experiment for all initial Cs concentrations. Spectroscopic analyses revealed neoformed solids including the zeolite Na-Al silicate (Al-chabazite), and feldspathoids sodium aluminum nitrate silicate (NO3-sodalite), and sodium aluminum nitrate silicate hydrate (NO3-cancrinite), which can incorporate Cs. Single-pulse 27Al solid-state nuclear magnetic resonance (NMR) spectroscopyyielded first-order rate constants (k)for mineral transformation that decreased from 3.5 x 10(-3) to 2 x 10(-3) d(-1) as Cs and Sr concentrations were increased from 10(-5) to 10(-3) M. Discrete strontium silicate solids were also observed. The incongruent dissolution of kaolinite promoted the sequestration of contaminants into increasingly recalcitrant solid phases over the 1-yr time period.

Adsorption↗

PubMed2002

Cesium adsorption on clay minerals: an EXAFS spectroscopic investigation.

Cesium adsorption on the clay minerals vermiculite and montmorillonite is described as a function of surface coverage using extended X-ray adsorption fine structure spectroscopy (EXAFS). Cesium (Cs) possessed a variable coordination environment consisting of Cs-O distances between 3.2 and 4.3 A; however, disorder typical of the Cs coordination environments prevented the resolution of all oxygen shells. On the basis of the influence of Cs loading and exchangeability on this structural arrangement, we could recognize both inner-sphere and outer-sphere adsorption complexes. The shorter Cs-O bond distance belongs to outer-sphere complexes typical of hydrated ions. In inner-sphere complexes, partially or fully dehydrated Cs coordinates directly to siloxane groups of the clay minerals forming longer Cs-O bonds. The inner-sphere adsorption complexes may have occurred within the interlayer or at frayed edge sites and were less extractable than the outer-sphere complexed Cs. Both coordination number ratios and linear combination fitting of EXAFS spectra were useful in estimating the fractions of inner-sphere and outer-sphere adsorption complexes. Our results show that X-ray absorption spectroscopy (XAS), and particularly EXAFS, is a valuable technique for exploring the type of Cs binding in environmental samples.

Adsorption↗

PubMed2002

Humic acid complexation of basic and neutral polycyclic aromatic compounds.

Complexation by humic acid (HA) of basic (quinoline) and neutral (naphthalene) polycyclic aromatic compounds (PACs) was compared using fluorescence spectroscopy and equilibrium dialysis (ED). These compounds sorb to HA via cation exchange and hydrophobic interactions, respectively. Ionization of quinoline strongly affects its sorption to HA; maximum sorption is observed at pH close to logKb (4.92), and competition with H+ and electrolyte cation (Li+) is evident. Spectroscopic experiments indicate that quinolinium (QH+) cation fluorescence is quenched via a static mechanism (i.e., a dark complex is formed) when the protonated form is adsorbed via ion exchange to HA. The extent of sorption, calculated from fluorescence data using the Stern-Volmer equation, was compared to independent ED measurements. Although both methods indicated the same trends with solution chemistry, fluorescence quenching data suggested more extensive complexation than that measured using ED. In contrast to ionizable PACs, studied here and previously, interaction of naphthalene with HA is unaffected by changes in solution conditions (pH, ionic strength).

Adsorption↗

PubMedDate not supplied

Spectroscopic study of extracellular polymeric substances from Bacillus subtilis: aqueous chemistry and adsorption effects.

Reactions at ionizable functional groups in extracellular polymeric substances (EPS) from Bacillus subtilis are found to affect aqueous phase conformation and adsorption to mineral surfaces. Characterization by HPSEC, XPS, and FTIR indicates a wide range in apparent molecular mass (0.57-128 kDa), with functional group composition depending on cell growth phase (exponential vs stationary) and location in suspension (free vs cell-bound). ATR-FTIR spectroscopy shows complexation and dissociation of protons on acidic functional groups that result in alpha-helical protein conformation at pH < 2.6 and random coil (unordered) conformation at higher pH (>6). EPS exhibit higher affinity for adsorption to alpha-FeOOH than amorphous SiO(2) because of surface charge effects. Increased amide II band intensity and an amide I band shift to higher frequency indicate changes in protein structure upon adsorption. Goethite-EPS spectra show emergent vibrations consistent with P-O-Fe bonding, which suggests a role of phosphodiester groups in the adsorption reaction.

Adsorption↗