Biomedical subjects

Jonathan D Istok

Publications and source records attributed to Jonathan D Istok.

12 recordsLinked to original sources

PubMed2006

Uranium and technetium bio-immobilization in intermediate-scale physical models of an in situ bio-barrier.

We investigated the long-term effects of ethanol addition on U and Tc mobility in groundwater flowing through intermediate-scale columns packed with uncontaminated sediments. The columns were operated above-ground at a contaminated field site to serve as physical models of an in situ bio-barrierfor U and Tc removal from groundwater. Groundwater containing 4 microM U and 520 pM Tc was pumped through the columns for 20 months. One column received additions of ethanol to stimulate activity of indigenous microorganisms; a second column received no ethanol and served as a control. U(VI) and Tc(VII) removal was sustained for 20 months (approximately 189 pore volumes) in the stimulated column under sulfate- and Fe(III)-reducing conditions. Less apparent microbial activity and only minor removal of U(VI) and Tc(VII) were observed in the control. Sequential sediment extractions and XANES spectra confirmed that U(IV) was present in the stimulated column, although U(IV) was also detected in the control; extremely low concentrations precluded detection of Tc(IV) in any sample. These results provide additional evidence that bio-immobilization may be effective for removing U and Tc from groundwater. However, long-term effectiveness of bio-immobilization may be limited by hydraulic conductivity reductions or depletion of bioavailable Fe(III).

Bacteria↗

PubMed2006

Evaluation of the in-situ aerobic cometabolism of chlorinated ethenes by toluene-utilizing microorganisms using push-pull tests.

A series of transport, biostimulation, and activity push-pull tests were performed under induced and natural gradient conditions in a trichloroethene (TCE) and cis-dichloroethene (c-DCE) contaminated aquifer. Transport tests demonstrated the feasibility of injecting and recovering complex solute mixtures from the aquifer. During the biostimulation tests, decreases in toluene concentration and the production of o-cresol as an intermediate oxidation product indicated the presence of toluene-utilizing microorganisms. Activity tests demonstrated that the stimulated microbial community had the ability to transform injected c-DCE and trans-dichloroethene (t-DCE) at similar zero-order rates. Injected isobutene was oxidized to isobutene oxide, which indicated that a toluene ortho-monooxygenase enzyme system was likely responsible for the observed c-DCE and t-DCE transformations. c-DCE zero-order transformation rates in drift push-pull tests were similar to those obtained from traditional push-pull tests (about 0.1 microM/h). Analysis of drift test data using first-order kinetic analysis resulted in similar conclusions as those obtained using zero-order kinetic analyses. When 1-butyne, an inhibitor of toluene ortho-monooxygenase, was added to injected test solutions, the oxidation of toluene, and the transformation of isobutene, c-DCE, and t-DCE were inhibited. The results illustrate how a series of push-pull tests can be used in combination to detect, quantify and confirm in-situ cometabolic microbial transformations.

Aerobiosis↗

PubMed2006

Changes in organic matter biodegradability influencing sulfate reduction in an aquifer contaminated by landfill leachate.

In situ experiments were conducted to measure sulfate reduction rates and identify rate-limiting factors in a shallow, alluvial aquifer contaminated with municipal landfill leachate. Single-well, push-pull tests conducted in a well adjacent to the landfill with > 8 mM dissolved organic carbon (DOC) exhibited a sulfate reduction rate of 3.2 mumol SO4(-2) (L sediment)(-1) day(-1), a value in close agreement with laboratory-derived estimates. Identical tests conducted in wells located 90 m downgradient where DOC levels remained high (> 3 mM) showed no detectable sulfate consumption, and laboratory assays confirmed this observation. However, the rates of sulfate reduction in sediment samples obtained from this site were three times larger when they were amended with filter-sterilized groundwater from the upgradient location. The effect of various amendments on sulfate reduction rates was further examined in laboratory incubations using sediment collected from the downgradient site amended with 35S sulfate. Unamended sediments showed only weak conversion of the tracer to 35S sulfide (5 to 7 cpm/cm2), whereas the addition of Desulfovibrio cells increased 35S sulfide production to 44 cpm/cm2. However, the application of heat-killed Desulfovibrio had a similar stimulatory effect, as did a lactate amendment. Collectively, these findings indicate that the lack of measurable sulfate reduction at the downgradient site was not due to the absence of the necessary metabolic potential, the presence of lower sulfate concentration, or the quantity of electron donor, but by its biodegradability. The findings also indicate that field bioaugmentation attempts should be interpreted with caution.

Biodegradation, Environmental↗

PubMed2005

Push-pull tests evaluating in situ aerobic cometabolism of ethylene, propylene, and cis-1,2-dichloroethylene.

In situ aerobic cometabolic transformations of ethylene, propylene, and cis-1,2-dichloroethylene (c-DCE), by microorganisms stimulated on propane, were examined in groundwater contaminated with c-DCE and trichloroethylene (TCE). In situ measurements were performed by conducting field push-pull tests, which consisted of injecting site groundwater amended with a bromide tracer and combinations of propane, dissolved oxygen (DO), nitrate, ethylene, propylene, c-DCE, and TCE into existing monitoring wells and sampling the same wells over time. Mass balance and transformation rate calculations were performed after adjusting for dilution losses using measured tracer concentrations. Initial rates of propane utilization were very low; rates increased substantially following sequential additions of propane and DO. Evidence that propane and DO additions had stimulated organisms expressing a propane monoxygenase enzyme system and that had the capability to transform chlorinated aliphatic hydrocarbons (CAHs) included: (1) the transformation of injected ethylene and propylene to the cometabolic byproducts ethylene oxide and propylene oxide, (2) the transformation of c-DCE, and (3) the inhibition of these transformations in the presence of coinjected acetylene, a known monoxygenase mechanism-based inactivator. These results suggest that a series of push-pull tests performed with nontoxic chemical probes can be useful for detecting and monitoring in situ aerobic cometabolism of CAHs.

Alkenes↗

PubMed2004

Quantifying the effects of fumarate on in situ reductive dechlorination rates.

In situ methods are needed to evaluate the effectiveness of chemical amendments at enhancing reductive dechlorination rates in groundwater that is contaminated with the priority pollutant, trichloroethene (TCE). In this communication, a method that utilizes single-well, "push-pull" tests to quantify the effects of chemical amendments on in situ reductive dechlorination rates is presented and demonstrated. Five push-pull tests were conducted in each of five monitoring wells located in a TCE-contaminated aquifer at the site of a former chemical manufacturing facility. Rates for the reductive dechlorination of the fluorinated TCE-surrogate, trichlorofluoroethene (TCFE), were measured before (test 1) and after (test 5) three successive additions (tests 2-4) of fumarate. Fumarate was selected to stimulate the growth and activity of indigenous microorganisms with the metabolic capability to reduce TCFE and TCE. In three wells, first-order rate constants for the reductive dechlorination of TCFE increased by 8.2-92 times following fumarate additions. In two wells, reductive dechlorination of TCFE was observed after fumarate additions but not before. The transformation behavior of fumarate was also monitored following each fumarate addition. Correlations between the reductive dechlorination of TCFE and the reduction of fumarate to succinate were observed, indicating that these reactions were supported by similar biogeochemical conditions at this site.

Biodegradation, Environmental↗

PubMed2004

Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate.

Previous studies have demonstrated that metal-reducing microorganisms can effectively promote the precipitation and removal of uranium from contaminated groundwater. Microbial communities were stimulated in the acidic subsurface by pH neutralization and addition of an electron donor to wells. In single-well push-pull tests at a number of treated sites, nitrate, Fe(III), and uranium were extensively reduced and electron donors (glucose, ethanol) were consumed. Examination of sediment chemistry in cores sampled immediately adjacent to treated wells 3.5 months after treatment revealed that sediment pH increased substantially (by 1 to 2 pH units) while nitrate was largely depleted. A large diversity of 16S rRNA gene sequences were retrieved from subsurface sediments, including species from the alpha, beta, delta, and gamma subdivisions of the class Proteobacteria, as well as low- and high-G+C gram-positive species. Following in situ biostimulation of microbial communities within contaminated sediments, sequences related to previously cultured metal-reducing delta-Proteobacteria increased from 5% to nearly 40% of the clone libraries. Quantitative PCR revealed that Geobacter-type 16S rRNA gene sequences increased in biostimulated sediments by 1 to 2 orders of magnitude at two of the four sites tested. Evidence from the quantitative PCR analysis corroborated information obtained from 16S rRNA gene clone libraries, indicating that members of the delta-Proteobacteria subdivision, including Anaeromyxobacter dehalogenans-related and Geobacter-related sequences, are important metal-reducing organisms in acidic subsurface sediments. This study provides the first cultivation-independent analysis of the change in metal-reducing microbial communities in subsurface sediments during an in situ bioremediation experiment.

Bacteria↗

PubMed2003

"Forced mass balance" technique for estimating in situ transformation rates of sorbing solutes in groundwater.

A method for estimating in situ transformation rates of sorbing solutes in groundwater is presented. The method utilizes a novel data processing technique called "forced mass balance" (FMB) to remove the effects of transport processes from reactant and product concentrations measured during single-well, "push-pull" tests. The effectiveness of the FMB technique was evaluated by quantifying errors in derived rates obtained by applying FMB to simulated push-pull test data generated by a numerical model. Results from simulated tests indicated that errors in derived rates increase as the test duration, groundwater velocity, and ratio of reactant to product retardation factors increase. In addition, errors in derived rates increase as the reaction rate constant and aquifer dispersivity decrease. As a demonstration, the FMB technique was used to derive an in situ reductive dechlorination rate for trichlorofluoroethene (TCFE) using data from a field push-pull test. Error analyses indicated that the in situ TCFE transformation rate was underestimated by a factor of 1.1-2. Thus, the FMB technique makes it possible to estimate in situ transformation rates of sorbing solutes and when FMB is coupled with computer modeling to estimate errors in derived in situ rates.

Environmental Pollution↗

PubMed2002

Single-well "push-pull" partitioning tracer test for NAPL detection in the subsurface.

Previous environmental applications of partitioning tracer tests to detect and quantify nonaqueous phase liquid (NAPL) contamination in the subsurface have been limited to well-to-well tests. However, theory and numerical modeling suggests that single-well injection-extraction ("push-pull") partitioning tracer tests can also potentially detect and quantify NAPL contamination. In this type of test, retardation factors for injected partitioning tracers are estimated from the increase in apparent dispersion observed in extraction-phase breakthrough curves in the presence of NAPL. A series of laboratory push-pull tests was conducted in physical aquifer models (PAMs) packed with natural aquifer sediment prepared with and without the presence of trichloroethene (TCE) NAPL. Field tests were conducted in an aquifer contaminated with petroleum hydrocarbon NAPL. Injected test solutions contained a suite of partitioning and conservative (nonpartitioning) alcohol tracers. Laboratory push-pull partitioning tracer tests were able to detect and quantify sorption of partitioning tracers to aquifer sediment (in the absence of NAPL) and to detect NAPL when it was present. NAPL saturations computed from estimated retardation factors bracketed those computed from known volumes of emplaced NAPL in the sediment pack. However, numerical modeling with assumed homogeneous NAPL distribution and linear equilibrium partitioning of tracers between aqueous and NAPL phases was unable to reproduce all features of observed breakthrough curves. Excavation of the sediment pack after all tests indicated that a portion of the emplaced NAPL had sunk to the bottom of the PAM invalidating the modeling assumption of homogeneous NAPL distribution. Moreover, the apparent dispersion in extraction-phase breakthrough curves decreased when the injection-extraction pumping rate was decreased, suggesting that mass transfer limitations existed during laboratory tests. Field push-pull partitioning tracer tests were able to detect NAPL in a portion of the aquifer known to contain NAPL; computed NAPL saturations were comparble to those obtained from sediment coring and the results of a partitioning interwell tracer test conducted in the same location. This study clearly demonstrates that the single-well partitioning tracer test can detect NAPL under both laboratory and field conditions. However, additional research is needed to verify the ability of the test to quantify NAPL saturations.

Chemistry Techniques, Analytical↗

PubMed2002

In-situ evidence for uranium immobilization and remobilization.

The in-situ microbial reduction and immobilization of uranium was assessed as a means of preventing the migration of this element in the terrestrial subsurface. Uranium immobilization (putatively identified as reduction) and microbial respiratory activities were evaluated in the presence of exogenous electron donors and acceptors with field push-pull tests using wells installed in an anoxic aquifer contaminated with landfill leachate. Uranium(VI) amended at 1.5 microM was reduced to less than 1 nM in groundwater in less than 8 d during all field experiments. Amendments of 0.5 mM sulfate or 5 mM nitrate slowed U(VI) immobilization and allowed for the recovery of 10% and 54% of the injected element, respectively, as compared to 4% in the unamended treatment. Laboratory incubations confirmed the field tests and showed that the majority of the U(VI) immobilized was due to microbial reduction. In these tests, nitrate treatment (7.5 mM) inhibited U(VI) reduction, and nitrite was transiently produced. Further push-pull tests were performed in which either 1 or 5 mM nitrate was added with 1.0 uM U(VI) to sediments that already contained immobilized uranium. After an initial loss of the amendments, the concentration of soluble U(VI) increased and eventually exceeded the injected concentration, indicating that previously immobilized uranium was remobilized as nitrate was reduced. Laboratory experiments using heat-inactivated sediment slurries suggested that the intermediates of dissimilatory nitrate reduction (denitrification or dissimilatory nitrate reduction to ammonia), nitrite, nitrous oxide, and nitric oxide were all capable of oxidizing and mobilizing U(IV). These findings indicate that in-situ subsurface U(VI) immobilization can be expected to take place under anaerobic conditions, but the permanence of the approach can be impaired by disimilatory nitrate reduction intermediates that can mobilize previously reduced uranium.

Nitrates↗

PubMedDate not supplied

Push-pull tests for assessing in situ aerobic cometabolism.

Three types of single-well push-pull tests were developed for use in assessing the feasibility of in situ aerobic cometabolism of chlorinated aliphatic hydrocarbons (CAHs). These included transport tests, biostimulation tests, and activity tests. Transport tests are conducted to evaluate the mobility of solutes used in subsequent tests. These included bromide or chloride (conservative tracers), propane (growth substrate), ethylene, propylene (CAH surrogates), dissolved oxygen (electron acceptor), and nitrate (a minor nutrient). Tests were conducted at an experimental wellfield of Oregon State University. At this site, extraction phase breakthrough curves for all solutes were similar, indicating apparent conservative transport of the dissolved gases and nitrate prior to biostimulation. Biostimulation tests were conducted to stimulate propane-utilizing activity of indigenous microorganisms and consisted of sequential injections of site ground water containing dissolved propane and oxygen. Biostimulation was detected by the increase in rates of propane and oxygen utilization after each injection. Activity tests were conducted to quantify rates of substrate utilization and to confirm that CAH-transforming activity had likely been stimulated. In particular, the transformation of injected CAH surrogates ethylene and propylene to the cometabolic byproducts ethylene oxide and propylene oxide provided evidence that activity of the monooxygenase enzyme system, responsible for aerobic cometabolic transformations of CAHs, had likely also been stimulated. Estimated zero-order transformation rates decreased in the order propane > ethylene > propylene. The series of push-pull tests developed and field tested in this study should prove useful for conducting rapid, low-cost feasibility assessments for in situ aerobic cometabolism of CAHs.

Bacteria, Aerobic↗

PubMedDate not supplied

Approximate solution for solute transport during spherical-flow push-pull tests.

An approximate analytical solution to the advection-dispersion equation was derived to describe solute transport during spherical-flow conditions in single-well push-pull tests. The spherical-flow case may be applicable to aquifer tests conducted in packed intervals or partially penetrating wells. Using results of two-dimensional numerical simulations, we briefly illustrate the applicability of the derived spherical-flow solution and provide a comparison with its cylindrical-flow counterpart. Good agreement between simulated extraction-phase breakthrough curves and the spherical-flow solution was found when the length of the injection/extraction region was small compared to both aquifer thickness and maximum solute frontal position at the end of the injection phase. On the other hand, discrepancies between simulated breakthrough curves and the spherical-flow solution increased with increasing anisotropy in hydraulic conductivities. Several inherent limitations embedded in its derivation such as assumptions of isotropy and homogeneity warrant the cautious use of the spherical-flow solution.

Geological Phenomena↗

PubMedDate not supplied

Models to determine first-order rate coefficients from single-well push-pull tests.

Push-pull tests (PPTs) have been successfully employed to quantify various microbially mediated processes in the subsurface. Current models for determining first-order rate coefficients (k) from PPTs assume complete and instantaneous mixing of injected test solution in the portion of the aquifer investigated by the test, i.e., the system is treated like a well-mixed reactor. Here we present two alternative models to estimate k that are based on different mixing assumptions, i.e., plug-flow and variably mixed reactor models. Rate coefficients estimated by the models were compared using a sensitivity analysis and numerical simulations of PPTs. Results indicated that all models yielded reasonably accurate k estimates (errors < 13%), while best accuracy (errors < 1%) was obtained using the variably mixed reactor model. The well-mixed reactor model generally overestimated true (simulation input) k values, whereas true k values were consistently underestimated by the plug-flow reactor model. However, estimates of k obtained with the latter models bracketed true k values in all cases. As the variably mixed reactor model is more difficult to apply, we suggest using the well-mixed and plug-flow reactor models to obtain intervals for k estimates that will encompass true k values with high certainty. In an example application, we used all models to reanalyze a published PPT data set to obtain k estimates for nitrate consumption in a petroleum-contaminated aquifer. Similar results were obtained for all three models (relative differences < 10% between k estimates), indicating that all three models are robust tools for estimating k values from PPT experimental data.

Biodegradation, Environmental↗