PubMed Health⌕ Search

Biomedical subjects

José Rogan

Publications and source records attributed to José Rogan.

2 recordsLinked to original sources

Alternative search strategy for minimal energy nanocluster structures: the case of rhodium, palladium, and silver.

An alternative strategy to find the minimal energy structure of nanoclusters is presented and implemented. We use it to determine the structure of metallic clusters. It consists in an unbiased search, with a global minimum algorithm: conformational space annealing. First, we find the minima of a many-body phenomenological potential to create a data bank of putative minima. This procedure assures us the generation of a set of cluster configurations of large diversity. Next, the clusters in this data bank are relaxed by ab initio techniques to obtain their energies and geometrical structures. The scheme is successfully applied to magic number 13 atom clusters of rhodium, palladium, and silver. We obtained minimal energy cluster structures not previously reported, which are different from the phenomenological minima. Moreover, they are not always highly symmetric, thus casting some doubt on the customary biased search scheme, which consists in relaxing with density functional theory global minima chosen among high symmetry structures obtained by means of phenomenological potentials.

Journal Article↗

Structure of liquid GeO2 from a computer simulation model.

The structural properties of liquid GeO2 are investigated by means of molecular dynamics simulation using a pairwise potential. The simulations were performed in the microcanonical ensemble on systems with up to 576 particles prepared at 21 different densities, corresponding to pressures from -2 to 30 GPa, and temperatures of 1500 K and 3000 K. The pair correlation function, coordination number, angular distribution, and both the neutron and x-ray static structure factors are obtained and compared with those of liquid silica. The analysis of these results for the system at zero pressure indicates that in the liquid state the short range order is dominated by the presence of slightly distorted Ge(O(1/2))(4) tetrahedra. These tetrahedra are linked to each other mainly through the corners, with a Ge-O-Ge angle of approximately 130 degrees, similar to the amorphous phase. Beyond the basic tetrahedron some order persists, but to less extent than in liquid silica. Simulation of systems at higher densities shows a volume collapse in the pressure-volume curve in the range of 4-8 GPa, suggesting the possibility that a liquid-liquid phase transition occurs, as the one observed in the amorphous phase.

Journal Article↗