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Biomedical subjects

Joseph H Reibenspies

Publications and source records attributed to Joseph H Reibenspies.

At least 19 recordsLinked to original sources
PubMed2007

Control of S-based aggregation: designed synthesis of NiM2 and Ni2M trinuclear complexes.

Modification of the nickel dithiolate metalloligand, Ni(bme-daco) [where bme-daco = bis(mercaptoethyl)diazacyclooctane] or Ni-1, by oxygenation of one thiolate into a sulfinate, Ni(mese-daco) [where mese-daco = (mercaptoethyl)(sulfinatoethyl)diazacyclooctane] or Ni-2, restricts the ligating ability to monodentate and is expected to reduce the donor ability of the remaining thiolate S. Nevertheless, the Ni-2 complex forms a stable thiolate S-bound adduct of W0(CO)5, (Ni-2)W(CO)5, a complex whose upsilon(CO) IR spectrum reports insignificant differences in the donor abilities of Ni-1 and Ni-2 in (eta1-NiN2S2)W(CO)5 complexes. In the presence of the strong sulfophile CuI, a CuNi2 trimetallic, (Ni-2)2CuBr, was isolated. Another trimetallic, (mu-eta2-Ni-1)[W(CO)5]2, demonstrated the Ni(bme-daco), Ni-1, unit to bridge low-valent metals in a transoid configuration, yielding W-W distances of over 5 A.

Journal Article↗
PubMed2006

Malvone A, a phytoalexin found in Malva sylvestris (family Malvaceae).

The isolation and structure of a phytoalexin, malvone A (2-methyl-3-methoxy-5,6-dihydroxy-1,4-naphthoquinone) is reported. Malvone A formation is induced in Malva sylvestris L. by the plant pathogen Verticillium dahliae. In a turbimetric assay for toxicity to V. dahliae, it had an ED50 value of 24 microg/ml. The structure of malvone A was determined by MS and NMR spectroscopy, and by X-ray crystallographic analysis. The X-ray analysis showed water molecules were located in channels that run along the a-axis.

Malva↗
PubMed2006

NiN(2)S(2) complexes as metallodithiolate ligands to Rh(I), Rh(II) and Rh(III).

Three molecular structures are reported which utilize the NiN(2)S(2) ligands -, (bis(mercaptoethyl)diazacyclooctane)nickel and -', bis(mercaptoethyl)diazacycloheptane)nickel, as metallodithiolate ligands to rhodium in oxidation states i, ii and iii. For the Rh(I) complex, the NiN(2)S(2) unit behaves as a bidentate ligand to a square planar Rh(I)(CO)(PPh(3))(+) moiety with a hinge or dihedral angle (defined as the intersection of NiN(2)S(2) and S(2)Rh(C)(P) planes) of 115 degrees . Supported by -' ligands, the Rh(II) oxidation state occurs in a dirhodium C(4) paddlewheel complex wherein four NiN(2)S(2) units serve as bidentate bridging ligands to two singly-bonded Rh(II) ions at 2.893(8) A apart. A compilation of the remarkable range of M-M distances in paddlewheel complexes which use NiN(2)S(2) complexes as paddles is presented. The Rh(III) state is found as a tetrametallic [Rh(-')(3)](3+) cluster, roughly shaped like a boat propeller and structurally similar to tris(bipyridine)metal complexes.

Ligands↗
PubMed2006

The absolute configuration of (-)-3-hydroxy-alpha-calacorene.

3-Hydroxy-alpha-calacorene was identified in extracts from cold-shocked seedlings of cotton (Gossypium hirsutum L.) and kenaf (Hibiscus cannabinus L.), both of which are members of the Malvaceae family. (-)-3-Hydroxy-alpha-calacorene was isolated from Heterotheca inuloides Cass. (Asteraceae). HPLC on a chiral stationary phase column showed that the 3-hydroxy-alpha- calacorene from cotton and kenaf had the same relative configuration, while that from H. inuloides was of the opposite configuration. X-ray crystallographic analysis established the absolute configuration of the compound in H. inuloides as (8R)-(-)-3-hydroxy-alpha-calacorene.

Asteraceae↗
PubMed2006

A nickel tripeptide as a metallodithiolate ligand anchor for resin-bound organometallics.

The molecular structure of the acetyl CoA synthase enzyme has clarified the role of individual nickel atoms in the dinickel active site which mediates C-C and C-S coupling reactions. The NiN2S2 portion of the biocatalyst (N2S2 = a cysteine-glycine-cysteine or CGC4- tripeptide ligand) serves as an S-donor ligand comparable to classical bidentate ligands operative in organometallic chemistry, ligating the second nickel which is redox and catalytically active. Inspired by this biological catalyst, the synthesis of NiN2S2 metalloligands, including the solid-phase synthesis of resin-bound Ni(CGC)2-, and sulfur-based derivatization with W(CO)5 and Rh(CO)2+ have been carried out. Through comparison to analogous well-characterized, solution-phase complexes, Attenuated Total Reflectance FTIR spectroscopy establishes the presence of unique heterobimetallic complexes, of the form [Ni(CGC)]M(CO)x, both in solution and immobilized on resin beads. This work provides the initial step toward exploitation of such an evolutionarily optimized nickel peptide as a solid support anchor for hybrid bioinorganic-organometallic catalysts.

Acetate-CoA Ligase↗
PubMed2006

The amide oxygen donor. Metal ion coordinating properties of the ligand nitrilotriacetamide. A thermodynamic and crystallographic study.

The metal ion coordinating properties of ntam (nitrilotriacetamide) are reported. The protonation constant (pK) for ntam is 2.6 in 0.1 M NaClO(4) at 25 degrees C. Formation constants (log K(1)) in 0.1 M NaClO(4) at 25 degrees C, determined by (1)H NMR and UV-Vis spectroscopy are: Ca(II), 1.28; Mg(II), 0.4; La(III), 2.30; Pb(II), 3.69; Cd(II), 3.78; Ni(II), 2.38; Cu(II), 3.16. The measured log K(1) values for the ntam complexes are discussed in terms of the low basicity of the N-donor, as evidenced by the pK, and the effect of metal ion size on complex stability. The amide O-donors of ntam lead to the stabilization of complexes of large metal ions (Pb(II), Cd(II), La(III), Ca(II)) relative to log K1 for the NH3 complexes, while for small metal ions (Ni(II), Cu(II)) the amide O-donors lead to destabilization. This is discussed in terms of the role of chelate ring size in controlling metal ion size-based selectivity. The structures of [Pb(ntam)(NO3)2]2 (1) and [Ca2(ntam)3(H2O)2](ClO4)4.3H2O (2) are reported. For 1: triclinic, space group P1, a = 7.4411(16), b = 9.0455(19), c = 11.625(3) A, alpha = 69.976(4), beta = 79.591(4), gamma = 67.045(3) degrees, Z = 2, R = 0.0275. For 2: monoclinic, space group P2(1)/c, a = 10.485(2), b = 11.414(2), c = 38.059(8) A, beta = 92.05(3) degrees, Z = 4, R = 0.0634. Structure 1 is dimeric with two Pb atoms linked by bridging O-donors from the two ntam ligands. The coordination sphere consists of one N-donor and 3 O-donors from the ntam ligand, two O-donors from nitrates, and one bridging O-donor. The variation in bond length suggests a stereochemically active lone pair of electrons on the Pb. Structure 2 consists of two Ca(II) ions held together by 3 bridging O-donors from ntam groups. One Ca is 9-coordinate with two ntam ligands present, plus one bridging O-donor from the other Ca(II) ntam complex. The other Ca is 8-coordinate, with a single coordinated ntam, plus two coordinated H2O molecules, and two bridging O-donors from the other half of the complex. The role of M-O=C bond angles in controlling selectivity for metal ions on the basis of their size is discussed.

Acetamides↗
PubMed2005

Characterization of steric and electronic properties of NiN2S2 complexes as S-donor metallodithiolate ligands.

The physical properties and structures of a series of six complexes of the type (NiN(2)S(2))W(CO)(4) have been used to establish electronic and steric parameters for square planar NiN(2)S(2) complexes as bidentate, S-donor ligands. According to the nu(CO) stretching frequencies and associated computed Cotton-Kraihanzel force constants of the tungsten carbonyl adducts, there is little difference in donor abilities of the five neutral NiN(2)S(2) metallodithiolate ligands in the series. The dianionic Ni(ema)(2)(-) (ema = N,N'-ethylenebis(2-mercaptoacetamide)) complex transfers more electron density onto the W(CO)(4) moiety. A ranking of donor abilities and a comparison with classical bidentate ligands is as follows: Ni(ema)(=) > {[NiN(2)S(2)](0)} > bipy approximately phen > Ph(2)PCH(2)CH(2)PPh(2) > Ph(2)PCH(2)PPh(2). Electrochemical data from cyclic voltammetry find that the reduction event in the (NiN(2)S(2))W(CO)(4) derivatives is shifted to more positive potentials by ca. 0.5 V compared to the ca. -2 V Ni(II/I) redox event in the free NiN(2)S(2) ligand, consistent with the electron drain from the nickel-dithiolate ligands by the W(CO)(4) acceptor. Differences in Ni(II/I) DeltaE(1/2) values appear to have a ligand dependence which is related to a structural feature of the hinge angle imposed by the (mu-SR)(2) bridges. Thus the angle formed by the intersection of NiN(2)S(2)/WS(2)C(2) planes has been established by X-ray diffraction analyses as a unique orientational feature of the nickel-dithiolate ligands in contrast to classical diphosphine or diimine ligands and ranges in value from 136 to 107 degrees . Variable-temperature (13)C NMR studies show that the spatial orientations of the ligands remained fixed with respect to the W(CO)(4) moiety to temperatures of 100 degrees C.

Binding Sites↗
PubMed2005

Synthesis and molecular structures of mononitrosyl (N2S2)M(NO) complexes (M = Fe, Co).

A series of tetragonally distorted square pyramids of formula N2S2M(NO) (M = Fe, Co) is prepared and characterized by nu(NO) IR and EPR spectroscopies, magnetism and electrochemical properties, as well as solid-state crystal structure determinations. While the nu(NO) IR frequencies and the angleM-N-O angles indicate differences in the electronic environment of NO consistent with the Enemark-Feltham notation of [Fe(NO)]7 and [Co(NO)]8, the reduction potentials, assigned to [Fe(NO)]7 + e- <==> [Fe(NO)]8 and [Co(NO)]8 + e- <==> [Co(NO)]9 respectively, are very similar, and in cases identical, for most members of the series. Coupled with the potential for the M(NO) units to breathe out of and into the N2S2 core plane are unique S-M-N-O torsional arrangements and concomitant pi-bonding interactions which may account for the unusual coherence of reduction potentials within the series.

Journal Article↗
PubMed2005

Ene-diamine versus imine-amine isomeric preferences.

Cyanide-catalyzed aldimine coupling was employed to synthesize compounds with 1,2-ene-diamine and alpha-imine-amine structural motifs: 1,2,N,N'-tetraphenyletheylene-1,2-diamine (13) and (+/-)-2,3-di-(2-hydroxyphenyl)-1,2-dihydroquinoxaline (17), respectively. Single-crystal X-ray diffraction provided solid-state structures and density functional theory calculations were used to probe isomeric preferences within this and the related hydroxy-ketone/ene-diol system. The ene-diamine and imine-amine core structures were calculated (B3LYP/6-311++G(d,p)) to be essentially identical in energy (DeltaG = 0.2 kcal/mol in favor of the imine-amine, within the error of the calculation). However, additional effects-such as pi conjugation-in 13 render an ene-diamine structure that is slightly more stable than the imine-amine tautomer (14) (DeltaG = 0.2-0.7 kcal/mol, within the error of the calculation). In contrast, the intramolecular hydrogen bonding present in 17 significantly favors the imine-amine isomer over the ene-diamine tautomer (18) (DeltaG = 7.2-8.9 kcal/mol). For both 13 and 17, the optimized calculated structures (B3LYP/6-31+G(d')) are identical to those observed by single-crystal X-ray diffraction.

Journal Article↗
PubMed2005

Dual electron uptake by simultaneous iron and ligand reduction in an N-heterocyclic carbene substituted [FeFe] hydrogenase model compound.

An N-heterocyclic carbene containing [FeFe]H(2)ase model complex, whose X-ray structure displays an apical carbene, shows an unexpected two-electron reduction to be involved in its electrocatalytic dihydrogen production. Density functional calculations show, in addition to a one-electron Fe-Fe reduction, that the aryl-substituted N-heterocyclic carbene can accept a second electron more readily than the Fe-Fe manifold. The juxtaposition of these two one-electron reductions resembles the [FeFe]H(2)ase active site with an FeFe di-iron unit joined to the electroactive 4Fe4S cluster.

Binding Sites↗
PubMed2005

Lewis acid properties of zinc(II) in Its cyclen complex. The structure of [Zn(cyclen)(S=C(NH2)2](ClO4)2 and the bonding of thiourea to metal ions. Some implications for zinc metalloenzymes.

The structure of the complex [Zn(cyclen)Tu](NO(3))(2) (1) is reported (cyclen = 1,4,7,10-tetraazacyclododecane; Tu = thiourea): orthorhombic, space group P2(1)2(1)2(1), a = 11.4170(11) A, b = 12.1995(11) A, c = 12.5299(12) A, Z = 4, R = 0.0504. The coordination of the cyclen is the same as that found for other similar Zn(II) complexes, with square pyramidal coordination around the Zn(II) and mean Zn-N bond lengths of 2.16 A. The coordinated Tu occupies the axial coordination site, with Zn-S = 2.31 A. The Zn-S-C-N torsion angle, involving the coordinated Tu, of 75.4 degrees is unusually large, because such torsion angles involving coordinated Tu are normally closer to 0 degrees. The bonding between Zn and S is discussed in terms of overlap with the p orbitals on S, which favors the eclipsed (Zn-S-C-N torsion = 0 degrees) mode of coordination of Tu. The energies of eclipsed and staggered modes (Zn-S-C-N = 90 degrees) of coordination of Tu to metal ions are examined by means of ab initio calculations, using the STO-3G basis set. It is concluded that the rather low formation constant for the Tu complex with Zn(II)/cyclen reported in this work was due to steric effects in 1, which prevent the adoption of the lower energy eclipsed conformation. These steric effects, because of clashes that would occur between Tu in the eclipsed conformation and the cyclen ring, cause the coordination of Tu with a higher energy conformation, with Zn-S-C-N = 75.4 degrees. The latter approaches the high energy staggered conformation that has Zn-S-C-N = 90 degrees. log K(1) values for Cl(-), Br(-), I(-), and CN(-) are reported and shown to be consistent with the binding site on the Zn(II) in the Zn(II)/cyclen complex being softer in the hard and soft acids and bases (HSAB, Pearson 1997) sense than the Zn(II) aqua ion, but not as soft as Zn(II) in triaza macrocycles that promote tetrahedral coordination. The change in HSAB character from intermediate in the Zn(II) aqua ion to softer in the cyclen complex, and softer still in tridentate N-donor ligands in model complexes, and in the Zn(II) active site of carbonic anhydrase as representative of Zn(II) metalloenzymes in general, is discussed in terms of the role of such effects in the functioning of metalloenzymes.

Binding Sites↗
PubMed2005

N2S2Ni metallodithiolate complexes as ligands: structural and aqueous solution quantitative studies of the ability of metal ions to form M-S-Ni bridges to mercapto groups coordinated to nickel(II). implications for acetyl coenzyme A synthase.

The nickel(II) complex of an N2S2 ligand, derived from a diazacycle, N,N'-bis(mercaptoethyl)-1,5-diazacycloheptane, (bme-dach)Ni, Ni-1', serves as a metallodithiolate ligand to NiII, CuI, ZnII, Ag, and PbII. The binding ability of the NiN2S2 ligand to the metal ions was established through spectrochemical titrations in aqueous media and compared to classical S-donor ligands. For M = Ni, Zn, Pb, binding constants, log K = ca. 2. were computed for 1:1 Ni-1'/M(solvate) adducts; for Ag+ and Cu+, the 3:2 (Ni-1')3M2 adducts were the first formed products even in water with log beta3,2 values of 26 and >30, respectively. In all cases, the binding ability of Ni-S-R is intermediate between that of a free thiolate and a free thioether. The great specificity for copper over nickel and zinc by N2S2Ni, which serves as a reasonable structural model for the distal nickel of the acetyl CoA synthase active site, relates to biochemical studies of heterogeneity (metal content and type) in various preparations of acetyl CoA synthase enzyme.

Acetate-CoA Ligase↗
PubMed2005

Novel chiral "calixsalen" macrocycle and chiral robson-type macrocyclic complexes.

A family of novel chiral "calixsalen" Schiff base macrocycles R,R-H(3)L4, R,R-H(3)L5, containing three chiral diamino moieties were synthesized by an efficient self-assembly and characterized by (1)H and (13)C NMR, mass spectrometry, and X-ray diffraction. The systematic synthesis, structure, and coordination properties of the [2 + 2] and [3 + 3] Robson-type Schiff base macrocyclic mono-, di-, tri-, and tetranuclear metal complexes were explored.

Journal Article↗
PubMed2004

A sterically expanded "constrained geometry catalyst" for highly active olefin polymerization and copolymerization: an unyielding comonomer effect.

The 14 A octamethyloctahydrodibenzofluorene moiety has been incorporated into a sterically expanded constrained geometry catalyst, Me2Si(eta1-C29H36)(eta1-N-tBu)ZrCl2.OEt2 (1). The solid-state structure suggests that the activated olefin polymerization catalyst is quite spatially accessible, rationalizing its extraordinary reactivity toward alpha-olefins. 1/MAO (MAO = methylaluminoxane) can be more reactive toward alpha-olefins than toward ethylene and exhibit activities that are linearly and continuously proportional to 4-methyl-1-pentene or 1-octene concentration in their copolymerizations with ethylene.

Journal Article↗
PubMed2004

Paramagnetism at ambient temperature, diamagnetism at low temperature in a Ru2(6+) core: structural evidence for zero-field splitting.

Variable temperature magnetic studies of the Ru(2)(6+) guanidinate compounds Ru(2)(hpp)(4)Cl(2) (1) and Ru(2)(hpp)(4)(CF(3)SO(3))(2) (2) show that they are paramagnetic with two unpaired electrons at room temperature and that they appear essentially diamagnetic at 2 K. In neither compound do the Ru-Ru distances vary by more than 0.008(1) A from 27 to 296 K. This argues strongly that the ground state electronic configuration remains constant over this temperature range and that the decrease in magnetism as the temperature is lowered must be attributable to zero-field splitting of the (3)A(2g) ground state arising from the electronic configuration sigma(2)pi(4)delta(2)pi(2). The Ru-Ru distance in 1 is about 0.04-0.05 A longer than that in 2 which indicates that the Ru(2)(hpp)(4)(2+) core is quite sensitive to the nature of the axial ligands. The electronic spectra show three absorption bands for each compound.

Journal Article↗
PubMed2004

Combinatorial screening employing nylon loops and micro-X-ray powder diffraction.

A combinatorial screening method is described that employs nylon loops and micro-X-ray powder diffraction. The nylon loops are used to position the sample in a three-circle X-ray diffractometer in such a way as to allow for Gandolfi-like scans. These scans maximize mechanical tumbling of the sample, which in turn results in higher quality data. The diffractometer utilizes a pinhole source and two-dimensional area detection for rapid data collection. The method can be readily automated by employing single-crystal screening procedures. The combinatorial analysis of the three known polymorphs of D-mannitol is discussed and a simple procedure to produce all three polymorphs from the same starting solutions is presented.

Combinatorial Chemistry Techniques↗
PubMed2004

Synthesis, characterization, and photochemical and computational investigations of Ru(II) heterocyclic complexes containing 2,6-dimethylphenylisocyanide (CNx) ligand.

The isocyanide ligand forms complexes with ruthenium(II) bis-bipyridine of the type [Ru(bpy)(2)(CNx)Cl](CF(3)SO(3)) (1), [Ru(bpy)(2)(CNx)(py)](PF(6))(2) (2), and [Ru(bpy)(2)(CNx)(2)](PF(6))(2) (3) (bpy = 2,2'-bipyridine, py = pyridine, and CNx = 2,6-dimethylphenylisocyanide). The redox potentials shift positively as the number of CNx ligands increases. The metal-to-ligand charge-transfer (MLCT) bands of the complexes are located at higher energy than 450 nm and blue shift in proportion to the number of CNx ligands. The complexes are not emissive at room temperature but exhibit intense structured emission bands at 77 K with emission lifetimes as high as 25 micros. Geometry optimization of the complexes in the singlet ground and lowest-lying triplet states performed using density functional theory (DFT) provides information about the orbital heritage and correlates with X-ray and electrochemical results. The lowest-lying triplet-state energies correlate well with the 77 K emission energies for the three complexes. Singlet excited states calculated in ethanol using time-dependent density functional theory (TDDFT) and the conductor-like polarizable continuum model (CPCM) provide information that correlates favorably with the experimental absorption spectra in ethanol.

Computer Simulation↗