Biomedical subjects

Joshua L Goodman

Publications and source records attributed to Joshua L Goodman.

5 recordsLinked to original sources

PubMed2006

FlyBase: genomes by the dozen.

FlyBase (http://flybase.org/) is the primary database of genetic and genomic data for the insect family Drosophilidae. Historically, Drosophila melanogaster has been the most extensively studied species in this family, but recent determination of the genomic sequences of an additional 11 Drosophila species opens up new avenues of research for other Drosophila species. This extensive sequence resource, encompassing species with well-defined phylogenetic relationships, provides a model system for comparative genomic analyses. FlyBase has developed tools to facilitate access to and navigation through this invaluable new data collection.

Animals↗

PubMed2005

Bond-coupled electron transfer processes: cleavage of Si-Si bonds in disilanes.

Photooxidation of 1,1,2,2-tetra-tert-butyl-1,2-diphenyldisilane, 1, by triplet sensitizers in CHCl3/CCl4 solutions yields chlorosilane, 2, in high chemical yield. The quantum yield for formation of 2 depends on the energy of the ion radical pair formed following initial electron transfer. Dissociative return electron transfer (DRET) is proposed as the mechanism for the highly efficient Si-Si bond cleavage in 1. DRET may be a useful strategy for the fragmentation of other such bonds in di-, oligo-, and polysilanes as well as other group 4A compounds using a variety of sensitizers with different spectral properties.

Journal Article↗

PubMed2004

Homology model of the structure of influenza B virus HA1.

Influenza B virus is one of two types of influenza virus that cause substantial morbidity and mortality in humans, the other being influenza A virus. The inability to provide lasting protection to humans against influenza B virus infection is due, in part, to antigenic drift of the viral surface glycoprotein, haemagglutinin (HA). Studies of the antigenicity of the HA of influenza B virus have been hampered by lack of knowledge of its structure. To address this gap, two possible models have been inferred for this structure, based on two known structures of the homologous HA of the influenza A virus (subtypes H3 and H9). Statistical, structural and functional analyses of these models suggested that they matched important details of experimental observations and did not differ from each other in any substantive way. These models were used to investigate two HA sites at which viral variants appeared to carry a selective advantage. It was found that each of these sites coevolved with nearby sites to compensate for either size or charge changes.

Amino Acid Sequence↗

PubMed2003

Spectroscopic and calorimetric studies on the mechanism of methylenecyclopropane rearrangements triggered by photoinduced electron transfer.

2-(dideuteriomethylene)-1,1-bis(4-methoxyphenyl)cyclopropane (d(2)-1) undergoes degenerate rearrangement in both singlet- and triplet-sensitized electron-transfer photoreactions. Nanosecond time-resolved absorption spectroscopy on laser flash photolysis of the unlabeled 1 with 9,10-dicyanoanthracene, 1,2,4,5-tetracyanobenzene, or N-methylquinolinium tetrafluoroborate as an electron-accepting photosensitizer gives rise to two transients with lambda(max) at 500 and 350 nm assigned to the dianisyl-substituted largely twisted trimethylenemethane cation radical (6.+) and the corresponding diradical (6..), respectively. These intermediates are also detected, respectively, by steady state and nanosecond time-resolved EPR with chloranil or anthraquinone as a sensitizer. The degenerate rearrangement of d(2)-1 thus proceeds via these two different types of intermediates in a cation radical cleavage-diradical cyclization mechanism. Energetics based on nanosecond time-resolved photoacoustic calorimetry support this mechanism. A comparison of the reactivities and the spectroscopic results of 1, 1,1-bis(4-methoxyphenyl)-2-methylenespiro[2.2]pentane (2), and 1-cyclopropylidene-2,2-bis(4-methoxyphenyl)cyclopropane (3) suggest that the reversible methylenecyclopropane rearrangement between 2 and 3 proceeds via a similar mechanism.

Journal Article↗

PubMed2003

Associative return electron transfer. A bond-coupled electron transfer in the photoreactions of cyclopropylamines.

The dynamics of the geminate radical-ion pairs formed by electron transfer to the excited states of cyanoanthracenes from 2-phenylcyclopropylamines are dominated by exothermic bond cleavage of the amine radical cations. Quantitative studies of product formation as a function of the energetics of the photochemical and corresponding thermal reactions provide support for a novel mechanism in which return electron transfer in the geminate pair occurs in concert with bond formation from the ring-opened radical cations. This bond-coupled electron transfer process is referred to as an associative return electron transfer reaction. The important features of the associative electron transfer process that explain the experimental observations are described in terms of potential energy surfaces and competition between adiabatic and non-adiabatic deactivation paths.

Journal Article↗