Biomedical subjects

Juan Casado

Publications and source records attributed to Juan Casado.

At least 19 recordsLinked to original sources

PubMed2006

Octopolar chromophores based on donor- and acceptor-substituted 1,3,5-tris(phenylethynyl)benzenes: impact of meta-conjugation on the molecular and electronic structure by means of spectroscopy and theory.

The molecular and electronic structures of a series of all-meta-substituted phenylacetylene mesitylenes peripherally substituted with donor or acceptor (D-A) groups are studied. The impact of meta- and para-substitution patterns is also analyzed by employing Raman and optical spectroscopies in conjunction with theoretical calculations. Outer phenyl rings display a partial quinoid character induced by two different motifs: (i) outer phenyls --> triple bond charge transfer for the cases where these phenyls are substituted with electron-donors; (ii) double electron withdrawing effect in the molecules with the peripheral phenyls substituted with electron acceptors. A moderate tuning of the optical gap is observed in agreement with the partial blockade of pi-electron conjugation exerted by the meta disposition. The orbital structure of the compounds partially preserves that of the mesitylene group showing extra-conjugation due to the addition of the arms, so that conjugation is not entirely obstructed but partially impeded in the ground electronic state (i.e., electron occupied orbitals). As for the excited states, the low-lying energy empty orbitals offer better conditions for full conjugation over the whole molecular scaffold. Interesting optical properties such as overlapping centers along the lowest energy optical excitations and enhanced optical transparency with importance for the application of these materials in optoelectronics have been justified on the basis of the electronic structure. A greater degree of quinoidization, and more allowed pi-electron delocalization, over the entire molecule is recognized in the case of linear phenylacetylenes substituting in para positions the central core.

Journal Article↗

PubMed2006

Structure-property relationships in push-pull amino/cyanovinyl end-capped oligothiophenes: quantum chemical and experimental studies.

A series of push-pull chromophores built around thiophene-based pi-conjugating spacers and bearing various types of amino donors and cyanovinyl acceptors have been analyzed by means of UV-vis-NIR, IR, and Raman spectroscopic measurements in the solid state as well as in solution. The intramolecular charge transfer (ICT) of these pi-conjugated systems has also been tested by analyzing the ability of the solute molecules to undergo shifts in their fluorescence emission maxima with increasing solvent polarity. These push-pull oligomers also display an attractive electrochemical behavior since they generate stable species both upon oxidation and reduction. Oxidation mainly involves changes in the electron-rich aminooligothienyl half-part of the molecule and leads to the formation of stable cations. On the other hand, reduction to radical anions and dianions is mainly cyanovinyl-centered but also affects the pi-conjugated electron relay. Density functional theory (DFT) calculations have been carried out to help the assignment of the most relevant electronic and vibrational features and to derive useful information about the molecular structure of these NLO-phores.

Journal Article↗

PubMed2006

Exploration of ground and excited electronic states of aromatic and quinoid S,S-dioxide terthiophenes. Complementary systems for enhanced electronic organic materials.

We analyze the electronic and molecular structures for the ground and excited electronic states of aromatic terthiophene (3T), the quinodimethane 3',4'-dibutyl-5,5' '-bis(dicyanomethylene)-5,5' '-dihydro-2,2':5',2' '-terthiophene (3Q), and isologues with the middle ring S-oxidized (3TO2, 3QO2). These represent extremes of electron rich and deficient ground states, often exhibiting complementary properties. Oxidizing the central sulfur atom affects the molecular structure, electron affinity, and photophysical properties of both pi systems. The consequences for 3T include de-aromatization of the central thiophene, red-shifting of the electronic absorption spectrum, and lowering of the reduction potential. The electron deficient quinoid 3QO2 shows an enhancement of electron affinity from reducing the electron-donor ability of sulfur, and a blue-shifting of its electronic absorption spectrum was seen. Fluorescence emission is quenched in the sulfonated terthiophene, and the contrary effect again would be expected upon sulfonation of a quinoid emitter. Raman vibrational spectroscopy, electrochemistry, and UV-vis and fluorescence spectroscopies are analyzed in conjunction with theoretical calculations.

Journal Article↗

PubMed2006

Structural implications of ring shape, dimension, and metal atom insertion in nanosized cyclic oligothiophenes: joint Raman and density functional theory study.

This paper reports on a combined spectroscopic and density functional theory study on a series of cyclo(diacetylenes-oligothiophenes) with different shapes and dimensions. The case of a macrocycle fragmented by the insertion of Pt metallic atoms is illustrated as well. The analysis covers the neutral and oxidized samples. A full assignment of the spectra has been proposed, supported by BP86/cc-pVDZ theoretical calculations. Ring shape and molecular dimension have been related with the C[Double Bond]CC-C structural parameters and Raman wave numbers. Platinum atom insertion within the acetylene spacer seems to soften ring strain owing to the rupture of the strained circular shape. Oxidation causes an overall downshift of the Raman wave numbers likely due to the skeletal relaxation of CC conjugated path, while the ring shape of each macrocycle is conserved upon oxidation.

Journal Article↗

PubMed2006

Optical, redox, and NLO properties of tricyanovinyl oligothiophenes: comparisons between symmetric and asymmetric substitution patterns.

A series of tricyanovinyl (TCV)-substituted oligothiophenes was synthesized and investigated with a number of physical methods including UV/Vis, IR, and Raman spectroscopy, nonlinear optical (NLO) measurements, X-ray diffraction, and cyclic voltammetry. Mono- or disubstituted oligomers were prepared by the reaction of tetracyanoethylene with mono- or dilithiated oligomers. The comparative effects of the symmetric and asymmetric substitutions in the electronic and molecular properties have been addressed. These oligomers display dramatic reductions in both their optical and electrochemical band gaps in comparison with unsubstituted molecules. The analysis of the electronic properties of the molecules was assisted by density functional theory calculations, which are in excellent agreement with the experimental data. TCV substitution influences the energies of the frontier orbitals, especially with respect to the stabilization of LUMO orbitals. X-ray structural characterization of a monosubstituted oligomer exhibits pi-stacking with favorable intermolecular interactions. NLO results agree with the role of the intramolecular charge-transfer feature in the asymmetric samples. These results furthermore exalt the role of conformational flexibility in the disubstituted compounds and reveal an unexpected nonlinear optical activity for symmetric molecules. Regarding the electronic structure, the interpretation of the vibrational data reflects the balanced interplay between aromatic and quinoid forms, finely tuned by the chain length and substitution pattern. The electronic and structural properties are consistent with the semiconducting properties exhibited by these materials in thin film transistors (TFTs).

Journal Article↗

PubMed2006

Hybrid organic semiconductors including chalcogen atoms in pi-conjugated skeletons. Tuning of optical, redox, and vibrational properties by heavy atom conjugation.

In this work, the interactions between heteroatoms (S, Se, and Te) and conjugated skeletons are analyzed. The study is carried out by using electronic absorption and fluorescence spectroscopies, electrochemistry, vibrational Raman spectroscopy, and theoretical calculations in the framework of DFT and TD-DFT theories. Optical spectra are described in terms of one-electron promotions between orbitals around the energy gap. Electrochemistry, in the framework of the Koopman's approach, is also interpreted. The vibrational Raman spectra are assigned to molecular modes and the evolution changing the heteroatom is addressed and an effective tuning of these properties is found. Part of this modulation is associated with local electronic interactions depending on the relative S, Se, and Te electronegativities. Unconventional long-range heteroatom-heteroatom interactions have been proposed which arise from the existence of effective pi-conjugated channels. The molecular level understanding of structure-property relationships in these organic/inorganic semiconductors are of great interest in the interdisciplinary area of material science.

Chalcogens↗

PubMed2006

Tuning of electronic properties in thienyl-phosphole pi-conjugated systems through P-functionalization monitored by Raman spectroscopy.

Herein, a Raman spectroscopic study of a new family of 2,5-di(2-thienyl)phospholes and thienyl-capped 1,1'-diphospholes is presented. The Raman spectra have been carefully assigned with the help of density functional calculations. For di(2-thienyl)phospholes, two well-differentiated groups of Raman bands exist that arise either from the central phosphole ring or from the outer thiophene substituents. These data reveal a segmentation of the electronic structure. This paper reports interesting relationships between geometrical data such as the BLA (bond-length alternation) parameter and Raman band wavenumbers. These correlations are unprecedented in the chemistry of phospholes and have been used to interpret the evolution of the electronic structure (aromaticity=pi-conjugation) upon 1) substitution of the central sulfur atom of terthiophene by phosphorus and 2) P-functionalization. Increasing the coordination number of the phosphole ring results in intramolecular charge transfer. The best scenario for phosphole aromaticity is found for 1,1'-diphospholes.

Journal Article↗

PubMed2006

Release of hypoacetylated and trimethylated histone H4 is an epigenetic marker of early apoptosis.

Nuclear events such as chromatin condensation, DNA cleavage at internucleosomal sites, and histone release from chromatin are recognized as hallmarks of apoptosis. However, there is no complete understanding of the molecular events underlying these changes. It is likely that epigenetic changes such as DNA methylation and histone modifications that are involved in chromatin dynamics and structure are also involved in the nuclear events described. In this report we have shown that apoptosis is associated with global DNA hypomethylation and histone deacetylation events in leukemia cells. Most importantly, we have observed a particular epigenetic signature for early apoptosis defined by a release of hypoacetylated and trimethylated histone H4 and internucleosomal fragmented DNA that is hypermethylated and originates from perinuclear heterochromatin. These findings provide one of the first links between apoptotic nuclear events and epigenetic markers.

Apoptosis↗

PubMed2006

Pilot scale mineralization of organic acids by electro-Fenton process plus sunlight exposure.

The viability of the electro-Fenton degradation of aqueous solutions of benzoic acid, 2,4-dichlorophenoxyacetic acid and oxalic acid has been studied at 20 A using a pilot flow reactor containing an anode and an oxygen diffusion cathode, both of 100 cm(2) section. Pollutants were preferentially oxidized by hydroxyl radicals formed in solution from reaction of Fe(2+) with electrogenerated H(2)O(2), allowing mineralization of benzoic acid and 2,4-D. For oxalic acid no electrochemical mineralization was observed. After electrolysis, samples of the different effluents were exposed to sunlight (Helielectro-Fenton process) and almost complete mineralization was reached after ca. 30-50 min without additional cost. Effects of parameters such as electrolysis time, pH and solar irradiation time on the process efficiencies were studied.

2,4-Dichlorophenoxyacetic Acid↗

PubMed2005

Mesitylthio-oligothiophenes in various redox states. Molecular and electronic views as offered by spectroscopy and theory.

A series of alpha,omega-bis(mesitylthio)oligothiophenes of various chain lengths and with different side substitution patterns have been studied in their oxidized states by means of electron absorption and Raman spectroscopies in combination with theory in the framework of the density functional theory. Upon chemical oxidation, stable radical cations, dications, and even radical trications are generated. Longer chain lengths better stabilize higher oxidation states. The tetramer can be easily converted to the dication, and a trication can be obtained for the ethylenedioxy derivative. The alpha,omega-sulfur atoms are actively involved in the formation of the charged species and exert a favorable tuning of their electronic structure. Raman spectra provide experimental evidence of the attainment of quinoidal structures within the conjugated path, initially heteroaromatic, with different extension as a function of the p-doping level.

Journal Article↗

PubMed2005

Synthesis and characterization of a novel terthiophene-based quinodimethane bearing a 3,4-ethylenedioxythiophene central unit.

The synthesis and a combined spectroscopic and density functional theoretical characterization of a 3',4'-ethylenedioxy-5,5' '-bis(dicyanomethylene)-5,5' '-dihydro-2,2':5',2' '-terthiophene analogue of 7,7,8,8-tetracyanoquinodimethane (TCNQ) are presented. Electrochemical data show that this novel trimer can be both reversibly reduced and oxidized at relatively low potentials. Quantum-chemical calculations show that the compound exhibits a quinoidal structure in its ground electronic state and that a certain degree of intramolecular charge transfer takes place from the central terthienyl moiety toward both =C(CN)2 end-caps. Therefore, the amphoteric redox behavior of this novel material can be related to the coexistence of an electron-impoverished terthienyl core endowed by two electron-enriched =C(CN)2 substituents. The UV-vis spectrum is dominated by the appearance of a strong absorption near 660 nm, attributable to the highest occupied molecular orbital (HOMO) --> lowest unoccupied molecular orbital (LUMO) pi-pi electronic transition of the terthienyl spine on the basis of time-dependent density functional theory (DFT) computations. The DFT calculations performed on the minimum-energy molecular geometry about the equilibrium atomic charge distribution, topologies, and energies of the frontier orbitals around the gap and about the Raman-active vibrations associated with the strongest Raman features are also consistent with a rather effective pi-electron conjugation and the partial degree of intramolecular charge transfer mentioned above. Our study reveals this novel heteroquinoid trimer could act as a promising candidate in organic field-effect transistor (OFET) applications.

Electrochemistry↗

PubMed2005

Incisive structure-spectroscopic correlation in oligothiophenes functionalized with (+/-) inductive/mesomeric fluorine groups: joint Raman and DFT study.

This paper presents a combined experimental Raman and density functional theory (DFT) study of a series of oligothiophenes with variable pi-core lengths and substituted at the alpha,omega- and beta,beta'-terminal positions with perfluorohexyl, perfluorohexylcarbonyl, perfluoroarene, and cyano groups. The study covers the neutral and the electrochemically oxidized samples. The spectra have been assigned with the help of B3LYP/6-31G** calculations and interpreted by the predictions of effective conjugation coordinate (ECC) theory. Direct relationships between the bond length alternation (BLA) parameters and the Raman wavenumbers of the two most important bands of the spectra have been outlined showing the collective character of their electronic and vibrational properties. It is found that the topology of the thienyl electronic structure is not uniform along the conjugated core with the external rings more aromatic, whereas for the innermost part the pi-electron delocalization is greater and extends with the increment of chain length. Perfluorohexyl substitution finely tunes the electronic properties via negative inductive effects. The beta,beta' isomers exhibit larger conformational distortion, which strongly modifies the mean conjugation length. Oxidation provokes electronic structure quinoidization spreading over the whole system but more marked in the central part of the pi-core. The Raman features associated to quinoidization in the oxidized species have been interpreted in relation to the oligomer core length and the substitution regiochemistry.

Crystallography, X-Ray↗

PubMed2005

Alternated quinoid/aromatic units in terthiophenes building blocks for electroactive narrow band gap polymers. Extended spectroscopic, solid state, electrochemical, and theoretical study.

We report here the synthesis of three novel pi-conjugated heterocyclic mixed trimers that contain two electron-donating 3,4-ethylenedioxy-2-thienyl (EDOT) units covalently attached to a central proquinoid electron-accepting thienopyrazine moiety (two of these narrow-HOMO-LUMO gap D-A-D compounds also bear hexyl side chains attached either to the outermost alpha positions of the EDOT end rings or to the beta positions of the pyrazine fused ring). The modification of the terthiophene structure upon EDO, pyrazine, and hexyl substitutions has been treated in detail with spectroscopic and theoretical arguments. Solid-state properties reveal the occurrence of short intramolecular contacts between heteroatoms of adjacent rings. The analysis of the structure of the pi-conjugated backbone of each molecule is consistent with a partial quinoid-like pattern which partially reverts to be subtly more aromatic depending on the topology of the positive inductive effect of the hexyl chains. This quinoidization is a consequence of the appearance of a D(EDOT)-->A(PyT)<--D(EDOT) intramolecular charge transfer which further polarizes the structure. The same chemical concepts have been applied to address their electrochemical behavior. The three mixed trimers exhibit amphoteric properties due to the combination of electron acceptor and donor groups. Given their relative low HOMO-LUMO energy gap, these trimers promise to be good candidates for obtaining polymers with significant low energy gap combining electroactivity.

Journal Article↗

PubMed2005

Tuning first molecular hyperpolarizabilities through the use of proaromatic spacers.

In this paper, we describe the second-order nonlinear optical properties of a series of 1,3-dithiole-based electron donor-acceptor systems incorporating proaromatic donor and spacer groups. Modification of the proaromaticity of the quinoid spacer gives rise to NLO-phores with mubeta values ranging from -2000 x 10(-)(48) esu to +3000 x 10(-)(48) esu. Quite surprisingly, compounds with a p-benzoquinoid spacer and a strong acceptor group show negative mubeta values, usually associated to zwitterionic ground states, and yet they are largely quinoid, as evidenced by crystallographic data and theoretical calculations. Progressive benzoannulation of the spacer and introduction of alkylsulfanyl substituents on the dithiole donor unit result in a shift to more positive mubeta values. DFT and ab initio calculations verify these empirical trends.

Journal Article↗

PubMed2005

Multidisciplinary physicochemical analysis of oligothiophenes end-capped by nitriles: electrochemistry, UV-vis-near-IR, IR, and Raman spectroscopies and quantum chemistry.

In this article, we investigate a series of alpha,omega-dicyano end-capped oligothiophenes NC(C(4)H(2)S)(n)()CN ranging in length from the dimer to the hexamer (n = 2-6), in the neutral state as pure solids, by means of Fourier transform IR and Fourier transform Raman (FT-Raman) spectroscopies. The cyclic voltammetry analysis of the compounds in dichloromethane reveals that most of them show two oxidation and two reduction waves (i.e., a dual or amphoteric electrochemical behavior), associated with the injection of either positive or negative charges into the pi-conjugated system. The doped species are characterized by in situ vis-near-IR and FT-Raman spectrochemistries. Density functional theory calculations have been also performed, at the B3LYP/6-31G level, to assess information about the molecular geometries and vibrational features of the neutral and doped species and about the topologies of the molecular orbitals involved in the main electronic transitions that appear for the neutral forms in the visible spectral region and for the doped species in the near-IR region.

Journal Article↗

PubMed2005

Mineralization of aromatics in water by sunlight-assisted electro-fenton technology in a pilot reactor.

The viability of the degradation of aqueous solutions of aniline, nitrobenzene, and 4-chlorophenol by the so-called Photoelectro-Fenton process in a pilot reactor is reported. The Electro-Fenton process stage, based on the flow of oxygen through a gas diffusion cathode to produce H2O2, allows mineralization of about a half of the TOC content in ca. 1 h, because anodic oxidation is coupled with Fenton reaction in the presence of Fe2+ catalyst. An intensity of 20 A was applied in a flow cell comprising a Ti/Pt anode and a carbon-PTFE cathode. After electrolysis, samples of the effluent were exposed to sunlight, and almost complete mineralization was reached after ca. 50 min. Effect of parameters such as electrolysis time, pH, initial concentration, and solar or UVA irradiation on the process efficiencies and the running costs are studied. The Photoelectro-Fenton process using sunlight effectively diminishes these costs. The analogous behavior of the three aromatics suggests similar degradation pathways, regardless of the different groups attached to the ring.

Aniline Compounds↗

PubMed2005

International validation of novel pyrogen tests based on human monocytoid cells.

It is a requirement that parenteral medicines be tested for pyrogens (fever causing agents) using one of two animal-based tests: the rabbit pyrogen test and the bacterial endotoxin test. Understanding the human fever reaction has led to novel non-animal alternative tests based on in vitro activation of human monocytoid cells in response to pyrogens. Using 13 prototypic drugs, clean or contaminated with pyrogens, we have validated blindly six novel pyrogen tests in ten laboratories. Compared with the rabbit test, the new tests have a lower limit of detection and are more accurate as well as cost and time efficient. In contrast to the bacterial endotoxin test, all tests are able to detect Gram-positive pyrogens. The validation process showed that at least four of the tests meet quality criteria for pyrogen detection. These validated in vitro pyrogen tests overcome several shortcomings of animal-based pyrogen tests. Our data suggest that animal testing could be completely replaced by these evidence-based pyrogen tests and highlight their potential to further improve drug safety.

Animals↗

PubMed2004

Electronic modulation of dithienothiophene (DTT) as pi-center of D-pi-D chromophores on optical and redox properties: analysis by UV-Vis-NIR and Raman spectroscopies combined with electrochemistry and quantum chemical DFT calculations.

In this paper, we study three symmetrical D-pi-D chromophores containing dithieno[3,2-b:2',3'-d]thiophene (DTT) as the pi-center and various donor end moieties, by means of UV-vis-NIR and FT-Raman spectroscopy and in situ spectroelectrochemistry. The compounds display dual redox properties: all exhibited two oxidations and single stable reduction peaks contrarily to the one or two oxidations and none reduction which could be anticipated in view of their chemical structures. We analyze the possible electronic modulation by the pi-conjugated DTT relay in the redox process and electronic coupling between the two electron donor (D) units attached through conjugation to opposite sides of the pi-linker. To this end, the UV-vis-NIR and FT-Raman spectra of the neutral compounds and of the charged species generated upon in situ p- or n-doping have been recorded and interpreted with the help of Density Functional Theory (DFT) calculations. The analysis of the peculiar Raman features of these pi-conjugated chromophores is guided by the formalism of the Effective Conjugation Coordinate (ECC) theory. This research shows that the Raman spectroscopic characterization of this type of D-pi-D structures is a powerful tool to derive information about their pi-conjugational properties in the pristine and doped states.

Journal Article↗