PubMed Health⌕ Search

Biomedical subjects

Jun Lu

Publications and source records attributed to Jun Lu.

At least 109 records · Page 6Linked to original sources

An introduction to Bayesian hierarchical models with an application in the theory of signal detection.

Although many nonlinear models of cognition have been proposed in the past 50 years, there has been little consideration of corresponding statistical techniques for their analysis. In analyses with nonlinear models, unmodeled variability from the selection of items or participants may lead to asymptotically biased estimation. This asymptotic bias, in turn, renders inference problematic. We show, for example, that a signal detection analysis of recognition memory data leads to asymptotic underestimation of sensitivity. To eliminate asymptotic bias, we advocate hierarchical models in which participant variability, item variability, and measurement error are modeled simultaneously. By accounting for multiple sources of variability, hierarchical models yield consistent and accurate estimates of participant and item effects in recognition memory. This article is written in tutorial format; we provide an introduction to Bayesian statistics, hierarchical modeling, and Markov chain Monte Carlo computational techniques.

Bayes Theorem↗

A hierarchical model for estimating response time distributions.

We present a statistical model for inference with response time (RT) distributions. The model has the following features. First, it provides a means of estimating the shape, scale, and location (shift) of RT distributions. Second, it is hierarchical and models between-subjects and within-subjects variability simultaneously. Third, inference with the model is Bayesian and provides a principled and efficient means of pooling information across disparate data from different individuals. Because the model efficiently pools information across individuals, it is particularly well suited for those common cases in which the researcher collects a limited number of observations from several participants. Monte Carlo simulations reveal that the hierarchical Bayesian model provides more accurate estimates than several popular competitors do. We illustrate the model by providing an analysis of the symbolic distance effect in which participants can more quickly ascertain the relationship between nonadjacent digits than that between adjacent digits.

Cognition↗

[The association of S447X and Hind III polymorphism in the lipoprotein lipase gene with dyslipidemia of the metabolic syndrome in patients with essential hypertension].

OBJECTIVE: To assess the association of S447X mutation and Hind III polymorphism in the lipoprotein lipase gene with dyslipidemia of the metabolic syndrome in patients with essential hypertension. METHODS: A total of 983 patients were randomly selected from those with hypertension (diagnosed in the Community-based Comprehensive Studies on Prevention and Control of Hypertension Project in China) and those not treated with anti-hypertensive medications for at least in 2 weeks immediately before blood collection. Among them were 389 subjects with dyslipidemia and 594 subjects without dyslipidemia. The definition of dyslipidemia in patients with hypertension was used only when triglyceride or HDL-cholesterol was at abnormal level. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) was used to determine Ser447stop mutation and Hind III polymorphism in LPL gene. RESULTS: Linkage disequilibrium between the two sites was observed, with three major haplotypes identified: H+S, H-S, and H-X. The LPL gene S447X mutation and H-X haplotype were significantly associated with dyslipidemia (OR=0.547, 95%CI: 0.348-0.859 for S447X mutation; OR=0.537, 95%CI: 0.328-0.880 for H-X haplotype) in male, both by themselves and after adjustment for age, body mass index, smoking, alcohol intake, systolic blood pressure, diastolic blood pressure, education and serum glucose. The LPL H- carriers and H-S haplotype were significantly associated with dyslipidemia (OR=0.575, 95%CI: 0.358-0.923) in female after multivariate adjustment. Moreover, compared with the H+S haplotype, the H-X haplotypes were associated with significantly lower TG and Log (TG/HDL-C) levels in both men and women, and with higher HDL-C levels in women; whereas no significant difference was observed between the H-S and H+S haplotype. Compared with the H-S haplotype, the H-X haplotypes had significant effect on the HDL-C levels in women. CONCLUSION: The LPL H-X haplotype was one of the protective factors of dyslipidemia of metabolic syndrome in hypertensive patients. It is significantly associated with low triglyceride, log triglyceride-to-HDL-cholesterol ratio and high HDL-cholesterol levels. S447X mutation does not explain all the effect associated with the Hind III polymorphism, although the effect on serum lipids associated with the H-X haplotype appeared to be mainly mediated by the S447X mutation. It is possible that some functional mutations in the LPL gene besides the S447X mutation are in linkage disequilibrium with the Hind III polymorphism.

Aged↗

Effects of cracks and some key factors on emissions of nitrous oxide in paddy fields.

Paddy field is a primary agricultural landscape in the south of China and is often regarded as one of main sources emitting nitrous oxide to atmosphere. The nitrous oxide emissions under a variety of paddy field practices, such as fertilization, flooding/draining management were investigated to study on agricultural activities on paddy field affect the dynamic process of the emission. Under no addition of fertilizers the average emission flux of nitrous oxide was 8.55 microg/(m2 x h) during the rice( Oryza Sativa L. ) growth season. The results indicated that most of nitrous oxide emissions occurred during the crack forming-and-expansion period when paddy field was being drained. The diurnal emissions peak of nitrous oxide appeared at 20:30 at night in cracked rice fields. The statistical analysis suggested that the correlation of nitrous oxide emissions flux ( Y) with soil water content ( X1 ), soil temperature ( X2 ), and Eh ( X3 ), could be described in a regression equation: Y= - 1498.95 + 2895.48X, + 50.63 X2 - 96.99X1 x X2 + 0.006X2 x X3. There were the different power equations to simulate the correlations between the everyday dynamic N2O emissions and the mean surface area of cracks, mean volume and depth of cracks respectively during paddy soil drying by soil columns incubation experiments. Taken all together, the current study presented a dynamic analysis of nitrous oxide emission of paddy field under various conditions, therefore provided a basis for the management to balance between environmental effect and paddy field activities.

Agriculture↗

[3D emulation of epicardium dynamic mapping].

In order to realize epicardium dynamic mapping of the whole atria, 3-D graphics are drawn with OpenGL. Some source codes are introduced in the paper to explain how to produce, read, and manipulate 3-D model data.

Body Surface Potential Mapping↗

Lipopolysaccharide decreasing albumin expression in rat hepatocytes.

BACKGROUND: The relations of the severity of hypoalbuminemia to morbidity and mortality of patients with critical illness illustrate the need for better understanding of molecular mechanism of hypoalbuminemia. This study was undertaken to investigate the response of albumin synthesis to lipopolysaccharide (LPS)in rat hepatocytes in vitro in early acute phase of sepsis. METHODS: Hepatocytes were cultured at an initial cell density of 1.5 x 10(6) cells/well in 3 ml culture medium. There were two groups of samples which received either normal saline or 1 microg/L LPS randomly. Albumin mRNA in hepatocytes was assessed by reverse transcription-polymerase chain reaction (RT-PCR)and albumin level in the supernatant was measured by ELISA at 0, 2, 8, 12, 24 hours after exposure. Meanwhile, the albumin precursor was evaluated at the same time points by flow cytometry. RESULTS: The quantitative changes of mRNA,albumin precursor and its protein were analogous. All of them tended to decline at 12 hours post-treatment and did not decrease significantly until 24 hours after LPS exposure. Meanwhile, albumin mRNA decreased about 30% and the levels of albumin precursor and albumin reduced approximately 50%. CONCLUSIONS: LPS can inhibit albumin synthesis in rat hepatocytes by prevention of albumin transcription. Moreover, the response of hepatic albumin synthesis to LPS changes with the stage of sepsis process. The results show that albumin metabolism in sepsis is a complicated process and further studies are required to understand the molecular mechanism of LPS-induced hypoalbuminemia in sepsis.

Albumins↗

[Management of urinary obstruction following renal transplantation: report of 16 cases].

OBJECTIVE: To explore the diagnosis and treatment of urinary obstruction involving the transplanted kidney. METHODS: A retrospective analysis was performed in 16 cases of urinary obstruction involving the transplanted kidney, including 5 cases of ureteral calculi, 6 vesicoureteral anastomotic stricture, 2 pyeloureteral junction stricture after transplantation, 1 ureter necrosis due to graft rejection, and 2 infection surrounding the renal graft and ureter end necrosis. RESULTS: Only one patient had the renal graft removed due to massive hemorrhage in an open surgery for correction of urinary obstruction, and the renal function of the graft was preserved in all the other cases after endoscopic or open surgeries. In the follow-up for 0.5 to 3 years after the second surgery, serum creatinine of the patients were maintained within the range of 90-150 micromol/L, without further renal enlargement or exacerbation of renal retention shown by B-mode ultrasonography. CONCLUSION: Urinary obstruction after renal transplantation is a difficult surgical complication, which can be managed by endoscopic or open surgeries depending on the causes of the obstruction.

Adult↗

[The elp3 subunit of human elongator complex ignificantly complemented the growth defects of yeast elp3delta strain].

The human elongator complex was found to be very similar to the yeast Elongator both in composition and its interaction with RNA polymerase II. But little is known about its functions in vivo. In this study, we analyzed the functions of the help3, the catalytic subunit of human Elongator, using a yeast complementation system. The results indicated that help3 was able to significantly complement the growth defects of the elp3delta yeast strain under high temperature and caffeine conditions. Gene expression analysis showed that help3 significantly resumed the slow activation of the pho5 gene under the low phosphate condition, and when heat shocked it increased the expression level of ssa3 gene. The yhelp3 containing the HAT domain of human elp3 and the remainder of yeast elp3 had a higher complementation ability than human elp3, while the yhelp3HA T- with the catalytic HAT domain deleted had no complementation ability. These results implicate that human Elp3 subunit had similar functions to those of the yeast, and the HAT activity of human Elp3 was essential for its function.

Acid Phosphatase↗

Mutational analysis of TraM correlates oligomerization and DNA binding with autoregulation and conjugative DNA transfer.

F plasmid TraM, an autoregulatory homotetramer, is essential for F plasmid bacterial conjugative transfer, one of the major mechanisms for horizontal gene dissemination. TraM cooperatively binds to three sites (sbmA, -B, and -C) near the origin of transfer in the F plasmid. To examine whether or not tetramerization of TraM is required for autoregulation and F conjugation, we used a two-plasmid system to screen for autoregulation-defective traM mutants generated by random PCR mutagenesis. A total of 72 missense mutations in TraM affecting autoregulation were selected, all of which also resulted in a loss of TraM function during F conjugation. Mutational analysis of TraM defined three regions important for F conjugation, including residues 3-10 (region I), 31-53 (region II), and 80-121 (region III); in addition, residues 3-47 were also important for the immunoreactivity of TraM. Biochemical analysis of mutant proteins indicated that region I defined a DNA binding domain that was not involved in tetramerization, whereas regions II and III were important for both tetramerization and efficient DNA binding. Mutations in region III affected the cooperativity of binding of TraM to sbmA, -B, and -C. Our results suggest that tetramerization is important for specific DNA binding, which, in turn, is essential for traM autoregulation and F conjugation. These findings support the hypothesis that TraM functions as a "signaling" factor that triggers DNA transport during F conjugation.

Amino Acid Sequence↗

A facile chemical route to semiconductor metal sulfide nanocrystal superlattices.

We report a facile chemical route for the synthesis of monodisperse nanocrystals of various metal sulfides (PbS, Cu(2)S, and Ag(2)S) and their assemblies into nanocrystal superlattices (NCSs); the sulfides NCSs were precipitated by adding ethanol to nanocrystal colloids, which were obtained directly by a reaction between metal thiolate and thioacetamide in a pure dodecanethiol solvent.

Journal Article↗

A pentacene with a 144 degrees twist.

9,10,11,20,21,22-Hexaphenyltetrabenzo[a,c,l,n]pentacene (1) was prepared by the reaction of 1,3-diphenylphenanthro[9,10-c]furan with the bisaryne equivalent generated from 1,2,4,5-tetrabromo-3,6-diphenylbenzene in the presence of n-butyllithium, followed by deoxygenation of the double adduct with low-valent titanium. The X-ray structure of 1 shows it to be the most highly twisted polycyclic aromatic hydrocarbon known, with an end-to-end twist of 143.6 degrees . Compound 1 was resolved by chromatography on a chiral support, and the pure enantiomers have specific rotations in excess of 7000 degrees , but the molecule racemizes slowly at 25 degrees C (t1/2 = 9.3 h, DeltaGrac = 23.8 kcal/mol).

Bromobenzenes↗

Preparation, properties, and applications of n-pentenyl arabinofuranosyl donors.

[reaction: see text] The development of n-pentenyl furanosyl donors has been tested using arabinose as a model. The readily prepared ortho ester (NPOE) is converted into disarmed (NPG(AC)) and thence armed (NPG(ALK)) n-pentenyl arabinofuranosides. The reactivities of these furanosyl donors and pyranosyl counterparts have been assessed by allowing pairs of both to compete for an acceptor. For the NPOE and armed (NPG(ALK)) pairs, coupling products were obtained from donors, whereas for the disarmed (NPG(AC)) pair, only the arabinofurano coupled product was obtained. To probe their synthetic utility, the NPOE was shown to be the only precursor needed to prepare an alpha-1,5-linked arabinan segment of the complex lipoarabinomannan cell wall array of Mycobacterium tuberculosis.

Arabinose↗

Thalidomide pharmacokinetics and metabolite formation in mice, rabbits, and multiple myeloma patients.

PURPOSE: Thalidomide has a variety of biological effects that vary considerably according to the species tested. We sought to establish whether differences in pharmacokinetics could form a basis for the species-specific effects of thalidomide. EXPERIMENTAL DESIGN: Mice and rabbits were administered thalidomide (2 mg/kg) p.o. or i.v., and plasma concentrations of thalidomide were measured after drug administration using high performance liquid chromotography. Plasma samples from five multiple myeloma patients over 24 hours after their first dose of thalidomide (200 mg) were similarly analyzed and all data were fitted to a one-compartment model. Metabolites of thalidomide in plasma were identified simultaneously using liquid chromatography-mass spectrometry. RESULTS: Plasma concentration-time profiles for the individual patients were very similar to each other, but widely different pharmacokinetic properties were found between patients compared with those in mice or rabbits. Area under the concentration curve values for mice, rabbits, and multiple myeloma patients were 4, 8, and 81 micromol/L. hour, respectively, and corresponding elimination half-lives were 0.5, 2.2, and 7.3 hours, respectively. Large differences were also observed between the metabolite profiles from the three species. Hydrolysis products were detected for all species, and the proportion of hydroxylated metabolites was higher in mice than in rabbits and undetectable in patients. CONCLUSIONS: Our results show major interspecies differences in the pharmacokinetics of thalidomide that are related to the altered degree of metabolism. We suggest that the interspecies differences in biological effects of thalidomide may be attributable, at least in part, to the differences in its metabolism and hence pharmacokinetics.

Adult↗

High-yield carbon nanorods obtained by a catalytic copyrolysis process.

Carbon nanorods were produced with a yield of about 90% by the copyrolysis of C(6)H(6) and C(5)H(6) at 600 degrees C under the cocatalysis of Fe and Mg. Many novel Y-junction carbon nanorods were found in the products. The obtained carbon nanorods have a diameter in the range of 200-350 nm and are several micrometers in length. The effects of reactants, catalysts, and the temperature were investigated, and the experimental results indicate that C(5)H(6) and cocatalysts Fe and Mg play crucial roles in the formation of carbon nanorods. The possible formation mechanism of the carbon nanorods is discussed.

Journal Article↗

Hydrothermal route to InAs semiconductor nanocrystals.

Spherical InAs nanocrystals of 30-50 nm were hydrothermally synthesized at 120 degrees C, which showed a 100 meV-blueshift of band gap absorption and phonon confinement of optical vibration mode. The study of hydrothermal formation mechanism indicated that crystalline InAs could be obtained in an extended pH range (approximately -0.15 to 14).

Journal Article↗

Synthesis of a malaria candidate glycosylphosphatidylinositol (GPI) structure: a strategy for fully inositol acylated and phosphorylated GPIs.

A congener of the glycosylphosphatidylinositol (GPI) membrane anchor present on the cell surface of the malaria pathogen Plasmodium falciparum has been synthesized. This GPI is an example of a small number of such membrane anchors that carry a fatty acyl group at O-2 of the inositol. Although the acyl group plays crucial roles in GPI biosynthesis, it rarely persits in mature molecules. Other notable examples are the mammalian GPIs CD52 and AchE. The presence of bulky functionalities at three contiguous positions of the inositol moiety creates a very crowded environment that poses difficulties for carrying out selective chemical manipulations. Thus installations of the axial long-chain acyl group and neighboring phosphoglyceryl complex were fraught with obstacles. The key solution to these obstacles in the successful synthesis of the malarial candidate and prototype structures involved stereoelectronically controlled opening of a cyclic ortho ester. The reaction proceeds in very good yields, the desired axial diastereomer being formed predominantly, even more so in the case of long-chain acyl derivatives. The myoinositol precursor was prepared from methyl alpha-d-glucopyranoside by the biomimetic procedure of Bender and Budhu. For the glycan array, advantage was taken of the fact that (a). n-pentenyl ortho ester donors are rapidly and chemospecifically activated upon treatment with ytterbium triflate and N-iodosuccinimide and (b). coupling to an acceptor affords alpha-coupled product exclusively. A strategy for obtaining the GPI's alpha-glucosaminide component from the corresponding alpha-mannoside employed Deshong's novel azide displacement procedure. Thus all units of the glycan array were obtained from a beta-d-manno-n-pentenyl ortho ester, this being readily prepared from d-mannose in three easy, high-yielding steps. The "crowded environment" at positions 1 and 2, noted above, could conceivably be relieved by migration of the acyl group to the neighboring cis-O-3-hydroxyl in the natural product. However, study of our synthetic intermediates and prototypes indicate that the O-2 acyl group is quite stable, and that such migration does not occur readily.

Acylation↗

A new approach of enhancing the shear stress of electrorheological fluids of montmorillonite nanocomposite by emulsion intercalation of poly-N-methaniline.

Poly-N-methaniline/montmorillonite (PNMA-MMT) nanocomposite particles with high dielectric constant as well as suitable conductivity were synthesized by an emulsion intercalation method and characterized by FT-IR, XRD, and TEM spectrometry, respectively. The electrorheological (ER) properties of the suspensions of PNMA-MMT particles in silicone oil (20 wt%) were investigated under DC electric fields. It was found that the shear stress of poly-N-methaniline/montmorillonite electrorheological fluid (ERF) is 6.0 kPa in 3 kV/mm (74.5 s(-1)), which is 3.6 times that of electrorheological fluid at zero field, and also much higher than that of pure poly-N-methaniline (PNMA) and montmorillonite (MMT). In the range of 10-90 degrees C, the shear stress changes slightly with the temperature. The sedimentation ratio of PNMA-MMT ERF was about 97% after 60 days. Furthermore, the dielectric constant of PNMA-MMT nanocomposite was increased 3.74 times that of PNMA and 1.99 times that of MMT at 1000 Hz, the dielectric loss tangent also increased about 1.58 times that of PNMA. It is apparent that the notable ER effect of PNMA-MMT ER fluid was attributed to the prominent dielectric property of the poly-N-methaniline/montmorillonite nanocomposite particles.

Journal Article↗