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Biomedical subjects

K A Nugent

Publications and source records attributed to K A Nugent.

11 recordsLinked to original sources
PubMed2003

Unique phase recovery for nonperiodic objects.

It is well known that the loss of phase information at detection means that a diffraction pattern may be consistent with a multitude of physically different structures. This Letter shows that it is possible to perform unique structural determination in the absence of a priori information using x-ray fields with phase curvature. We argue that significant phase curvature is already available using modern x-ray optics and we demonstrate an algorithm that allows the phase to be recovered uniquely and reliably.

Algorithms↗
PubMed2003

Quantitative phase radiography with polychromatic neutrons.

We develop and experimentally demonstrate a formalism that allows accurate phase imaging using neutron sources producing highly polychromatic beams. The results of measurements from a rectangular block of silicon compare favorably with theoretical simulations based upon the known composition and geometry of the block. The increased flux and reduced exposure times will permit a simple extension of the technique to tomographic phase imaging.

Journal Article↗
PubMed2003

Measurement of the spatial coherence function of undulator radiation using a phase mask.

A measurement of the horizontal coherence function of 7.9 keV radiation from an undulator beam line at the Advanced Photon Source is reported. X-ray diffraction from a phase-shifting mask was used, and the coherence function was measured as a function of the width of beam-conditioning slits in the beam line. The coherence distribution is found to be best described by a Lorentzian function.

Journal Article↗
PubMed2002

Quantitative phase-amplitude microscopy II: differential interference contrast imaging for biological TEM.

Although phase contrast microscopy is widespread in optical microscopy, it has not been as widely adopted in transmission electron microscopy (TEM), which has therefore to a large extent relied on staining techniques to yield sufficient contrast. Those methods of phase contrast that are used in biological electron microscopy have been limited by factors such as the need for small phase shifts in very thin samples, the requirement for difficult experimental conditions, or the use of complex data analysis methods. We here demonstrate a simple method for quantitative TEM phase microscopy that is suitable for large phase shifts and requires only two images. We present a TEM phase image of unstained Radula sp. (liverwort spore). We show how the image may be transformed into the differential interference contrast image format familiar from optical microscopy. The phase images contain features not visible with the other imaging modalities. The resulting technique should permit phase contrast TEM to be performed almost as readily as phase contrast optical microscopy.

Animals↗
PubMed2002

Quantitative phase-amplitude microscopy I: optical microscopy.

In this paper, the application of a new optical microscopy method (quantitative phase-amplitude microscopy) to biological imaging is explored, and the issue of resolution and image quality is examined. The paper begins by presenting a theoretical analysis of the method using the optical transfer function formalism of Streibl (1985). The effect of coherence on the formation of the phase image is explored, and it is shown that the resolution of the method is not compromised over that of a conventional bright-field image. It is shown that the signal-to-noise ratio of the phase recovery, however, does depend on the degree of coherence in the illumination. Streibl (1985) notes that partially coherent image formation is a non-linear process because of the intermingling of amplitude and phase information. The work presented here shows that the quantitative phase-amplitude microscopy method acts to linearize the image formation process, and that the phase and amplitude information is properly described using a transfer function analysis. The theoretical conclusions are tested experimentally using an optical microscope and the theoretical deductions are confirmed. Samples for microscopy influence both the phase and amplitude of the light wave and it is demonstrated that the new phase recovery method can separate the amplitude and phase information, something not possible using traditional phase microscopy. In the case of a coherent wave, knowledge of the phase and amplitude constitutes complete information that can be used to emulate other forms of microscopy. This capacity is demonstrated by recovering the phase of a sample and using the data to emulate a differential interference contrast image.

Journal Article↗
PubMed2002

Precision measurement of the electromagnetic fields in the focal region of a high-numerical-aperture lens using a tapered fiber probe.

We present a measurement of the intensity around the focus of a N.A.-0.95 lens using a tapered optical fiber probe. An asymmetry introduced by the vector nature of the incident polarized light is evident, although it is inconsistent with that predicted theoretically by considering the magnitude squared of the electric field. The sensitivity of the probe to different components of the electromagnetic field is considered, and it is shown that the measurement is consistent with vector diffraction theory when the probe properties are taken into account.

Journal Article↗
PubMed2001

Phase retrieval from images in the presence of first-order vortices.

We discuss retrieval of the phase of quantum-mechanical and classical wave fields in the presence of first-order vortices. A practical method of phase retrieval is demonstrated which is robust in the presence of noise. Conditions for the uniqueness of the retrieved phase are discussed and we show that determination of the phase in a given plane requires a series of at least three two-dimensional intensity images at different propagation distances. The method is applicable to a wide range of scenarios such as the imaging of imperfect crystals, quantitative determination of the strength of vortex filaments in high-temperature superconductors, and x-ray and electron holography.

Journal Article↗
PubMed2000

Confocal laser scanning ophthalmoscope and spherical harmonics used as a possible aid to detect glaucoma.

We present a procedure whereby the confocal laser scanning ophthalmoscope can be used to extract information about the three-dimensional structure of the central excavated area or the cup of the optic nerve head of the eye. The data are analyzed in terms of spherical harmonics. It is hypothesized that the shape of the cup of the optic nerve head for a normal eye can be parameterized by a specific set of spherical harmonic coefficients and is different from the set of coefficients describing a glaucomatous eye. The sets of coefficients are analyzed by using multivariate statistics and can in turn be used to classify new observations. Preliminary results indicate that there are significant differences in the coefficients and that the procedure might have potential as a diagnostic aid for the detection or the screening of glaucoma.

Glaucoma↗
PubMed2000

Noninterferometric quantitative phase imaging with soft x rays.

We demonstrate quantitative noninterferometric x-ray phase-amplitude measurement. We present results from two experimental geometries. The first geometry uses x rays diverging from a point source to produce high-resolution holograms of submicrometer-sized objects. The measured phase of the projected image agrees with the geometrically determined phase to within +/-7%. The second geometry uses a direct imaging microscope setup that allows the formation of a magnified image with a zone-plate lens. Here a direct measure of the object phase is made and agrees with that of the magnified object to better than +/-10%. In both cases the accuracy of the phase is limited by the pixel resolution.

Journal Article↗
PubMed1997

Use of a confocal laser scanning ophthalmoscope to detect glaucomatous cupping of the optic disc.

PURPOSE: The aim of the present study was to test the hypothesis that the three-dimensional (3-D) topography of the optic disc contains sufficient information to diagnose glaucoma with a high degree of reliability. METHODS: The Zeiss 'Confocal Laser Scanning Ophthalmoscope' (CLSO) was used to obtain digitized samples of 3-D images of optic nerve heads from the following three groups of patients: (i) 40 normals with normal optic discs, normal Humphrey 24-2 full threshold visual fields and an intraocular pressure (IOP) < or = 21 mmHg, (ii) 20 established glaucoma patients with cupping, glaucomatous field loss and an IOP > 21 mmHg; and (iii) 20 early glaucoma patients with early cupping, field loss with a mean defect less than -10 dB and IOP > 21 mmHg. The cupping in these patients was paramaterized by spherical harmonics and was classified by multivariate statistical analysis. RESULTS: Of 40 glaucoma patients, 39 were correctly classified. Of 40 normal patients one was classified as glaucoma. CONCLUSIONS: This study demonstrates that the CLSO, with the use of spherical harmonics, can differentiate glaucomatous from normal optic discs in this selected group of patients without the need for a skilled observer. This constitutes a promising technique to be tested on a large, unselected body of patients as a screening tool.

Adult↗