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K Bock

Publications and source records attributed to K Bock.

At least 19 recordsLinked to original sources
PubMed1992

Active site similarities of glucose dehydrogenase, glucose oxidase, and glucoamylase probed by deoxygenated substrates.

The specificity constants, kcat/KM, were determined for glucose oxidase and glucose dehydrogenase using deoxy-D-glucose derivatives and for glucoamylase using deoxy-D-maltose derivatives as substrates. Transition-state interactions between the substrate intermediates and the enzymes were characterized by the observed kcat/Km values and found to be very similar. The binding energy contributions of individual sugar hydroxyl groups in the enzyme/substrate complexes were calculated using the relationship delta(delta G) = -RT ln [(kcat/KM)deoxy/(kcat/KM)hydroxyl] for the series of analogues. The activity of all three enzymes was found to depend heavily on the 4- and 6-OH groups (4'- and 6'-OH in maltose), where changes in binding energies from 10 to 18 kJ/mol suggested strong hydrogen bonds between the enzymes and these substrate OH groups. The 3-OH (3'-OH in maltose) was involved in weaker interactions, while the 2-OH (2'-OH in maltose) had a very small if any role in transition-state binding. The three enzyme-substrate transition-state interactions were compared using linear free energy relationships (Withers, S. G., & Rupitz, K. (1990) Biochemistry 29, 6405-6409) in which the set of kcat/KM values obtained with substrate analogues for one enzyme is plotted against the corresponding values for a second enzyme. The high linear correlation coefficients (rho) obtained, 0.916, 0.958, and 0.981, indicate significant similarity in transition-state interactions, although the three enzymes lack overall sequence homology.(ABSTRACT TRUNCATED AT 250 WORDS)

Amino Acid Sequence↗
PubMed1992

Elicitors and suppressors of the defense response in tomato cells. Purification and characterization of glycopeptide elicitors and glycan suppressors generated by enzymatic cleavage of yeast invertase.

Cleavage of yeast invertase by alpha-chymotrypsin produced a number of small glycopeptides that were highly active as elicitors of ethylene biosynthesis and phenylalanine ammonia-lyase in suspension-cultured tomato cells. Five of these elicitors were purified and their amino acid sequence determined. They all had sequences corresponding to known sequences of yeast invertase, and all contained an asparagine known to carry a N-linked small high mannose glycan. The most active glycopeptide elicitor induced ethylene biosynthesis and phenylalanine ammonia-lyase half-maximally at a concentration of 5-10 nM. Structure-activity relationships of the peptide part were analyzed by further cleavage of a defined glycopeptide elicitor with various proteolytic enzymes. Removal of the C-terminal phenylalanine enhanced the elicitor activity, whereas removal of N-terminal arginine impaired it. A glycopeptide with the peptide part trimmed to the dipeptide arginine-asparagine was still fully active as elicitor. Glycopeptides with identical amino acid sequences were further separated into fractions differing in the oligosaccharide side chain. A given peptide had high elicitor activity when carrying a glycan with 10-12 mannosyl residues (Man10-12GlcNAc2), a 3-fold lower activity when carrying Man9GlcNAc2 and a 100-fold lower activity when carrying Man8GlcNAc2. The oligosaccharides, released by endo-beta-N-acetylglucosaminidase H from the pure glycopeptide elicitors, acted as suppressors of elicitor-induced ethylene biosynthesis and phenylalanine ammonia-lyase activity. A series of such oligosaccharides in the size range of Man8-13GlcNAc was purified. The structure and composition of the purified oligosaccharides corresponded to the known small high mannose glycans of yeast invertase as verified by 1H NMR spectroscopy at 600 MHz. The highest suppressor activities were obtained with the oligosaccharides containing 10-12 mannosyl residues (Man10-12GlcNAc). The oligosaccharide Man8 GlcNAc was ineffective as a suppressor. Thus, the structural requirements for the free oligosaccharides to act as efficient suppressors were the same as for the oligosaccharide side chains of the glycopeptides for high elicitor activity. We propose that the glycan suppressors bind to the same recognition site as the glycopeptide elicitors without inducing a response.

Amino Acid Sequence↗
PubMed1992

A nuclear magnetic resonance spectroscopic investigation of Kdo-containing oligosaccharides related to the genus-specific epitope of Chlamydia lipopolysaccharides.

The 1H- and 13C-NMR parameters, chemical shifts and coupling constants, for the pentasaccharide of the genus-specific epitope of Chlamydia lipopolysaccharide and related di-, tri-, and tetra-saccharides have been measured and assigned completely using 1D and 2D techniques, and their structures have been confirmed. NOE experiments indicated the preferred conformation of the pentasaccharide and the component oligosaccharides. The 3JH,H demonstrate a change in conformation by rotation of the C-6-C-7 bond of the side chain of the (2----8)-linked Kdo (unit b) in alpha-Kdo-(2----8)-alpha-Kdo-(2----4)-alpha-Kdo-(2----6)-beta-GlcN-(1--- -6)- GlcNol, alpha-Kdo-(2----8)-alpha-Kdo-(2----4)-alpha-Kdo-(2----6)-beta-GlcNAc-(1- ---O)- allyl, and alpha-Kdo-(2----8)-alpha-Kdo-(2----4)-alpha-Kdo-(2----O)-allyl relative to that preferred in alpha-Kdo-(2----4)-alpha-Kdo-(2----6)-beta-GlcNAc-(1----O)-allyl, alpha-Kdo-(2----8)-alpha-Kdo-(2----O)-allyl, alpha-Kdo-(2----4)-alpha-Kdo-(2----O)-allyl, and alpha-Kdo-(2----6)-beta-GlcNAc-(1----O)-allyl, irrespective of the size of the aglycon, e.g., allyl or beta-D-GlcN residues. The conformational results have been substantiated by computer calculations using the HSEA approach.

Antigens, Bacterial↗
PubMed1992

Analysis of conformationally restricted models for the (1----6)-branch of asparagine-linked oligosaccharides by n.m.r.-spectroscopy and HSEA calculation.

The conformational preferences of the trisaccharide, beta-D-GlcpNAc-(1----2)-alpha-D-Manp-(1----6)-beta-D-GlcpOR (1) have been investigated by n.m.r.-spectroscopy and HSEA calculation. The fixed omega-angle bicyclic analogs 2 and 3, models for the gt and gg rotamers, respectively, of 1, were furthermore examined with the same techniques in an attempt to deduce which of the conformations accessible to 1 was recognized and glycosylated by the enzyme GlcNAc-transferase-V, which acts on a component of the (1----6)-arm of glycoproteins. Only the gg bicyclic 3 was found to be reactive with the enzyme and this study concludes, based on conformational analysis, that 1 as well as the natural Asn-linked oligosaccharide are recognized by GlcNAc-transferase-V in only one of the two local minimum energy conformations energetically accessible to these molecules in their gg rotamer.

Asparagine↗
PubMed1992

Regulation of androgen receptor mRNA and protein level by steroid hormones in human mammary cancer cells.

The regulation of the human androgen receptor (AR) by steroid hormones in human mammary cancer cells was investigated using immunocytochemical and ligand binding assays for its protein and Northern blot analyses for the corresponding mRNA. MFM-223 cells contain high levels of ARs and are growth-inhibited by dihydrotestosterone (DHT). The AR protein is down-regulated to 57% of the control by 10 nM DHT after 24 h, and the corresponding mRNA is also reduced. The nonsteroidal antiandrogen hydroxyflutamide had no effect on the AR level, whereas after incubation with 1 microM cyproterone acetate a slight down-regulation was observed. The AR level was restored completely after release from a 7 day treatment with DHT. However, only 60% of the control level was restored, if the cells wer grown in the presence of DHT for 6 weeks. In androgen-pretreated cells the proliferation rate remained decreased even after the withdrawal of DHT. Concomitantly the distinct growth inhibition was lost. Transfection experiments demonstrated a reduced activity of the residual androgen receptor in these pretreated cells. In addition to the AR, EFM-19 cells also contain significant amounts of estrogen and progesterone receptors. EFM-19 cells are not growth inhibited by physiological concentrations of DHT. Autoregulation of AR was also found in this cell line. Additionally, reduced levels of AR protein and mRNA were found in EFM-19 cells after treatment with the synthetic progestin R5020. The maximum effect of R5020 was observed at the high concentration of 1 microM. Estrogen treatment with 10 nM 17 beta-estradiol for 3 days reduced the AR level only by 25%.

Blotting, Northern↗
PubMed1992

From conceptual roles to structural relations: bridging the syntactic cleft.

The distinction between underlying and superficial linguistic structure is a staple of modern cognitive psychology. Despite increasingly diverse conceptions of syntactic relations in linguistic theory, the received view in psycholinguistics has remained one in which the entities assigned to underlying relations may assume different surface relations. The present article examines this view in the context of language production and reviews evidence that the disposition to bind animate entities to the surface subject relation is a basic feature of language use, suggesting that mappings from conceptual categories to syntactic relations form a main support of the bridge from conception to language. Proceeding on this assumption, the article also evaluates competing accounts of the mapping process in production. The results argue against syntactic relation-changing operations, but favor a division between meaning- and form-related mechanisms.

Concept Formation↗
PubMed1992

The tip-of-the-tongue phenomenon: blocking or partial activation?

Tip-of-the-tongue states may represent the momentary unavailability of an otherwise accessible word or the weak activation of an otherwise inaccessible word. In three experiments designed to address these alternative views, subjects attempted to retrieve rare target words from their definitions. The definitions were followed by cues that were related to the targets in sound, by cues that were related in meaning, and by cues that were not related to the targets. Experiment 1 found that compared with unrelated cues, related cue words that were presented immediately after target definitions helped rather than hindered lexical retrieval, and that sound cues were more effective retrieval aids than meaning cues. Experiment 2 replicated these results when cues were presented after an initial target-retrieval attempt. These findings reverse a previous one (Jones, 1989) that was reproduced in Experiment 3 and shown to stem from a small group of unusually difficult target definitions.

Adult↗
PubMed1992

Synthesis of deoxy derivatives of lactose and their hydrolysis by beta-galactosidase from E. coli.

Methyl 2-deoxy-alpha-lactoside, methyl 3-deoxy-beta-lactoside, 1,5-anhydro-4-O-beta-D-galactopyranosyl-D-glucitol and the 2-deoxy and 2,3-dideoxy derivatives of 1,5-anhydro-4-O-beta-D-galactopyranosyl-D-glucitol have been synthesized by deoxygenation of lactose derivatives at appropriate positions. Cyclohexyl beta-D-galactopyranoside has also been synthesized. All derivatives proved to be substrates for the enzyme beta-galactosidase from E. coli, but the rate of hydrolysis of the substrate analogues was strongly dependent on the nature of the aglycone.

Carbohydrate Sequence↗
PubMed1992

The function of the 5-hydroxymethyl group of lactose in enzymatic hydrolysis with beta-galactosidase from E. coli.

A series of 6-substituted methyl lactoside derivatives together with methyl allolactoside and (6S)-methyl [6-2H]lactoside have been synthesized and characterized by NMR spectroscopy. All compounds were tested as substrates for the enzyme beta-galactosidase from E. coli using progress curve kinetic methology both in single-substrate and competition experiments. The results show that the hydrolysis of methyl lactoside to a large extent takes place through an intramolecular transglycosidation reaction via allolactoside. Furthermore, methyl 6-amino-6-deoxy-D-glucopyranoside proved to be an ihibitor for the enzymatic hydrolysis.

Escherichia coli↗
PubMed1991

Controlled reduction of acarbose: conformational analysis of acarbose and the resulting saturated products.

Saturation of the double bond in the non-reducing terminal unit of the tetrasaccharide amylase inhibitor, acarbose (1), with Raney nickel as the catalyst and at pH 8, gave 57% of a approximately 1:1 mixture of the 5a-carba-gluco (2) and -ido (3) isomers together with cleavage products including 26% of the trisaccharide 6-deoxy-alpha-D-Glcp4N-(1----4)-alpha-D-Glcp-(1----4)-D-Glc (4). The saturated compounds were isolated and characterised using 1H- and 13C-n.m.r. spectroscopy. The preferred conformations of 1 and 2 were dependent on the state of ionisation of the bridging nitrogen atom. The inhibition by 1-4 of the hydrolysis of methyl beta-maltoside by glucoamylase has been investigated; 1 and 2 were strong inhibitors.

Acarbose↗
PubMed1991

Conformational analysis of sialyloligosaccharides.

The conformational properties of several sialyloligosaccharides present as terminal sequences in N- and O-linked carbohydrate groups of glycoproteins, have been analyzed based on the n.m.r. data of selected sialosides. The compounds examined include representatives of the alpha-D-NeuAc-(2----6)-beta-D-Gal-(1----4)-beta-D-GlcNAc, alpha-D-NeuAc-(2----3)-beta-D-Gal-(1----4)-beta-D-GlcNAc, alpha-D-NeuAc-(2----3)-beta-D-Gal-(1----3)-beta-D-GlcNAc, and alpha-D-NeuAc-(2----3)-beta-D-Gal-(1----3)-beta-D-GalNAc series. Two deuterated sialosides were prepared by enzymic sialylation of 6-deuterated galactose derivatives of methyl beta-D-galactopyranoside and lactoside. These were useful for the unambiguous establishment of the "gt" orientation of the flexible C-6 methylene unit of the galactose through 1H-1H coupling constants. Of all the (2----6) sialosides examined, only the deuterated di- and tri-saccharide afforded useful nuclear Overhauser enhancement data that could be used to evaluate the global minimum-energy conformations. Hard-sphere exoanomeric effect calculations estimated the glycosidic torsion angles for the global minimum-energy conformer of alpha-D-NeuAc-(2----6)-beta-D-Gal linkages to be -163/-132/61 degrees (theta, psi, and omega, respectively). However, the potential energy well surrounding this global minimum was very shallow and indicated a broad population distribution of conformers. These are illustrated by the isoenergy contour maps. The observation of n.O.e. between the H-3ax and H-6R of the galactose in two deuterated (2----6) sialosides, indeed supported the presence of one of the global minimum-energy conformers. The conformational analysis carried out for the di- and trisaccharide [alpha-D-NeuAc-(2----6)-beta-D-Gal-OMe and alpha-D-NeuAc-(2----6)-beta-D-Gal-(1----4)-beta-D-Glc-OMe respectively] was then extended to sialoside linkages of other tri- and penta-saccharides by comparison of their 1H- and 13C-n.m.r. chemical shifts. HSEA calculations for the (2----3) sialosides indicated the potential energy well containing the global minimum energy-conformer (theta, psi = -160 +/- 4, -11 +/- 2 degrees) was deeper than the one estimated for the (2----6) sialosides. The n.O.e. data are consistent with the distribution of the majority of conformers around the lowest-energy one in solution. CPK models highlighting the topographical differences between the lowest-energy conformations of alpha-(2----6) and alpha-(2----3) sialosides are presented.

Carbohydrate Conformation↗
PubMed1991

Steric and electronic effects in the formation of dihexulose dianhydrides. Reaction of racemic sorbose in anhydrous hydrogen fluoride and a facile synthesis of D-sorbose.

Treatment of DL-sorbose with anhydrous hydrogen fluoride gave a high yield of alpha-D-sorbopyranose alpha-L-sorbopyranose 1,2':2,1'-dianhydride. Similarly a mixture of D-fructose and D-sorbose gave a good yield of beta-D-fructopyranose alpha-D-sorbopyranose 1,2':2,1'-dianhydride. The formation of these products compared to the more complicated mixtures of compounds obtained by treatment of L-sorbose or D-fructose with hydrogen fluoride, is discussed in terms of conformations, and steric and electronic factors.

Carbohydrate Conformation↗
PubMed1991

Assignment of structures to oligosaccharides produced by enzymic degradation of a beta-D-glucan from barley by 1H- and 13C-n.m.r. spectroscopy.

The structures of one tri-(1), two tetra-(2 and 3), and one hexa-saccharide (4) produced by treatment of barley flour, after removal of the starch components, with a fungal beta-D-glucanase (Finizyme) have been assigned on the basis of 1H- and 13C-n.m.r. data as follows: beta-D-Glcp-(1----3)-beta-D-Glcp-(1----4)-D-Glcp (1), beta-D-Glcp-(1----4)-beta-D-Glcp-(1----3)-beta-D-Glcp-(1----4)-D-Glcp (2), beta-D-Glcp-(1----3)-beta-D-Glcp-(1----4)-beta-D-Glcp-(1----4)-D-Glcp (3), and beta-D-Xylp-(1----4)-[alpha-L-Araf-(1----3)]-[alpha-L-Ara f-(1----2)-beta-D-Xylp-(1----4)-beta-D-Xylp- (1----4)-D-Xylp (4).

Carbohydrate Sequence↗
PubMed1991

A nuclear magnetic resonance spectroscopic and conformational study of eight pseudo-trehaloses (D-glucopyranosyl 5a-carba-D- and -L-glucopyranosides).

N.m.r. data (1H and 13C) are presented for eight pseudo-trehalose derivatives in which the D-glucopyranosyl moiety is alpha or beta and the 5a-carbaglucopyranoside moiety is alpha-D, beta-D, alpha-L, or beta-L. The differences in the chemical shifts and then n.O.e. effects have been correlated with the preferred conformations estimated from empirical force-field calculations (HSEA), which have been used to calculate the average parameters over the whole energy surface. Of the four alpha-D-glucopyranosyl derivatives, only that with a 5a-carba-beta-D-glucopyranoside moiety (3) was a substrate for glucoamylase.

Carbohydrate Conformation↗
PubMed1991

Broken agreement.

The subjects and verbs of English sentences agree in number. This superficially simple syntactic operation is regularly implemented by speakers, but occasionally derails in sentences such as The cost of the improvements have not yet been estimated. We examined whether the incidence of such errors was related to the presence of subject-like semantic features in the immediate preverbal nouns, in light of current questions about the semantic versus syntactic nature of sentence subjects and the interactivity of language processing. In three experiments, speakers completed sentence fragments designed to elicit erroneous agreement. We varied the number and animacy of the head noun and the immediate preverbal (local) noun, as well as the amount of material separating the head noun from the verb. The plurality of the local noun phrase had a large and reliable effect on the incidence of agreement errors, but neither its animacy nor its length affected their occurrence. The latter findings suggest, respectively, that the semantic features of sentence subjects are of minimal relevance to the syntactic and morphological processes that implement agreement, and that agreement features are specified at a point in processing where the eventual length of sentential constituents has little effect on syntactic planning. Both results follow naturally from explanations of language production that emphasize the segregation of sentence formulation processes into relatively autonomous components.

Adult↗
PubMed1991

Hydrolysis of substrate analogues catalysed by beta-D-glucosidase from Aspergillus niger. Part II: Deoxy and deoxyhalo derivatives of cellobiose.

The hydrolysis of sixteen mainly deoxy and deoxyhalo derivatives of celloboise catalysed by beta-D-glucosidase from Aspergillus niger has been studied by means of 1H NMR spectroscopy and progress-curve enzyme kinetics in both single-substrate and competition experiments. In the non-reducing ring of cellobiose it was found that the hydroxy groups at positions 2', 3', and 4' are essential for the enzymatic hydrolysis. The primary hydroxy group on 6' in this ring is, although important for the hydrolysis, not essential. The analogues modified at positions 3' and 4' and the 6'-bromo-6'-deoxy derivative were not inhibitors, whereas the 2'-deoxy derivative inhibited the enzymatic hydrolysis of methyl beta-cellobioside to some extent. Of the analogues modified in the reducing ring, some were hydrolysed faster (e.g. the deoxy compounds) and some slower than methyl beta-cellobioside in single-substrate experiments, but all derivatives were hydrolysed at a lower rate than this reference substrate in direct competition and displayed relatively weak inhibitory effects. The results are interpreted qualitatively with respect to changes in the free binding energies of the substrates and catalytic transition states based on the Michaelis-Menten mechanism, and some mechanistic implications of these findings are discussed.

Aspergillus niger↗
PubMed1990

Derivatives of methyl beta-lactoside as substrates for and inhibitors of beta-D-galactosidase from E. coli.

The 2'-,4'-, and 6'-deoxy derivatives of methyl beta-lactoside have been synthesised by deoxygenation at positions 2', 4', and 6', and the 3'-deoxy derivative was obtained by a glycosylation reaction. The 2'-O-methyl, 2'-O-benzyl, 2'-amino-2'-deoxy, and 1'-deuterio derivatives have been synthesized also. Only the 6'-deoxy and 1'-deuterio derivatives were substrates for the beta-D-galactosidase from E. coli, and the 2'-deoxy- and 2'-amino-2'-deoxy derivatives were potent inhibitors for the hydrolysis of methyl beta-lactoside by the enzyme.

Carbohydrate Sequence↗