Biomedical subjects

K Ruud

Publications and source records attributed to K Ruud.

3 recordsLinked to original sources

PubMed2006

Solvent effects on the conformational distribution and optical rotation of gamma-methyl paraconic acids and esters.

A computational investigation of the optical rotatory power of cis and trans 2-methyl-5-oxo-tetrahydro-3-furancarboxylic acids and the corresponding methyl and ethyl esters is presented. Solvent effects on both the conformational space and the rotatory power are analyzed by comparing results obtained in vacuo with those computed--using the Polarizable Continuum Model--in methanol. A comparison with experimental observations for the optical rotatory power of the title compounds in methanol is also carried out, in a few cases also for several wavelengths. Agreement between theory and experiment is in all cases excellent, in particular when solvent effects are included both in the geometry optimization and in the calculation of the OR, thus confirming the validity of the computational procedure adopted, even for this challenging family of floppy molecules.

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PubMed2005

Optical rotation calculation of a highly flexible molecule: the case of paraconic acid.

The absolute configuration of (S)-(-)-paraconic acid is correctly assigned on the basis of ab initio calculations of the specific optical rotation (OR) at the sodium D line, carried out both in vacuum and in methanol. Density functional theory (DFT) and Møller-Plesset second-order perturbation theory (MP2) are used to determine the most stable conformational structures, whose OR values are then calculated using DFT linear response theory and London atomic orbitals. The total OR is obtained by averaging these values using the population fractions determined from Boltzmann's statistics. The total OR of the MP2 structures has the correct sign both in vacuum and in solution, whereas only the solvent-relaxed DFT structures correctly reproduce the experimental sign. The strong solvent effect on the total OR is shown to arise primarily due to the variations in the relative energies of the various conformations.

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PubMed2001

Zero-point vibrational effects on proton shieldings: functional-group contributions from ab initio calculations.

We investigate the effects of zero-point vibrational motion on the nuclear magnetic shielding constants of a large number of organic molecules. The vibrational corrections include anharmonic contributions from the potential energy surface and harmonic contributions from the curvature of the property surface. Particular attention is paid to vibrational corrections to hydrogen shielding constants where we show that vibrational corrections may be substantial, ranging from about +0.50 to -0.70 ppm, and thus demonstrating that ignoring these effects may give errors in the chemical shifts by more than 1 ppm in certain extreme cases. These effects can therefore not be neglected when comparing calculated results with experiment, not even for the chemical shifts. However, we also demonstrate that the vibrational corrections to the hydrogen shieldings are to a large extent transferable from one molecule to another. We have tabulated functional vibrational corrections to the hydrogen shieldings, based on results for more than 35 molecules. Unfortunately, no similar transferability has been observed for the vibrational corrections to shielding constants of other nuclei such as carbon, nitrogen, or oxygen.

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