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K Zechel

Publications and source records attributed to K Zechel.

At least 19 recordsLinked to original sources
PubMed1997

Structural and functional consequences of mutations within the hydrophobic cores of the HMG1-box domain of the Chironomus high-mobility-group protein 1a.

The high-mobility-group protein 1 box domain (HMG1-BD) is a structural element found in several DNA-binding proteins in eukaryotic cells. Its structure is dominated by three alpha-helices. The spatial arrangement of these helices into an L-shaped molecule is maintained by a number of apolar residues organized into a main and a secondary hydrophobic core. To analyze the significance of these residues for proper folding, conformational stability, and ability to bind and bend DNA, we have mutated the highly conserved Trp14 of the Chironomus HMG1a protein and have synthesized a series of N-terminally truncated forms. The observed alterations in DNA-binding and DNA-bending characteristics were correlated with structural consequences, as revealed by CD spectroscopy, limited trypsin digestion, and transverse urea gradient gel electrophoresis. Mutation of the Trp14 residue (Chironomus [W14A]HMG1a) and deletion of the seven N-terminal residues, respectively, which are members of the main and the secondary core of Chironomus HMG1a, both resulted in a substantial unfolding of the protein. Unexpectedly, these mutants still retained their ability to bind and bend DNA. Conformational analysis of wild-type cHMG1a and [W14A]cHMG1a showed that the proteins unfold at 2-4 M urea. In contrast, their DNA complexes persisted even at 6-8 M of the denaturant. Multiple contacts between the HMG1-BD and the DNA are probably responsible for the unusual stability of the complexes.

Amino Acid Sequence↗
PubMed1993

Structural and functional differences between histone H1 sequence variants with differential intranuclear distribution.

The chromatin of most cell types contains several different sequence variants of histone H1. The functional role of this heterogeneity is not known. In the larval tissues of the midge, Chironomus thummi, there are H1 variants of two types. H1 II-1, H1 II-2, and H1 III-1 have similar amino acid sequences and appear uniformly distributed in polytene interphase chromosomes. The total number of gene copies per genome for this type of H1 histones is about 40 in C. th. thummi and 50-60 in C. th. piger. In contrast, histone H1 I-1 is encoded by a single copy gene in C. th. thummi and by two to four genes in C. th. piger. It has a divergent structure and is found only in a limited number of condensed chromosome sites. The N-terminal domain of H1 I-1 contains an insertion that is lacking in the other H1 variants and that is part of a variant-specific bipartite sequence Lys-Ala-Pro-Lys-Ala-Pro-Xaa10-Lys-Val-Ala in front of the conserved central domain. N-terminal peptides of H1 I-1 including this motif, in contrast to the homologous peptide from H1 II-1, competed with the drug Hoechst 33258 for binding to the minor groove of the DNA double helix. Repeats of the sequence Lys-Ala-Pro are also present at the same distance from the conserved central domain, in a single H1 variant of a nematode and of a green alga. The motif could interact with linker DNA in intranuclear targeting or packaging a condensed subtype of chromatin, or both.

Amino Acid Sequence↗
PubMed1993

The interaction of 6-propionyl-2-(NN-dimethyl)aminonaphthalene (PRODAN)-labelled actin with actin-binding proteins and drugs.

The influence of various actin-binding proteins and drugs on the fluorescence emission of rabbit muscle actin labelled with the fluorescent probe acrylodan (6-acryloyl-2-dimethylaminonaphthalene) at Cys-374, the penultimate amino acid residue of the actin amino acid sequence, was studied. Addition of myosin, tropomyosin or phalloidin, agents known to bind only to filamentous F-actin, did not change the emission energy or the integrated intensity of the fluorescence spectrum. The presence of heavy meromyosin or of the glycolytic enzyme aldolase led to a small (approx. 2%) increase in the integrated intensity, and in the energy of the emitted fluorescence. The interaction of 6-propionyl-2-(NN-dimethyl)aminonaphthalene (PRODAN)-F-actin with pancreatic DNAase I and with a filament-severing 19 kDa protein from pig brain resulted in the gradual reduction of the integrated intensity of the emission and a red shift of the emission energy, suggestive of a disintegration of the actin filament structure. Profilin caused a < 10% change in the emission energy. Cytochalasin D reduced the integrated intensity of PRODAN-F-actin and red-shifted the emission energy, while cytochalasin B was without influence. Pancreatic DNAase I did not change the fluorescence emission of PRODAN-G-actin, suggesting that binding of this enzyme does not alter the environment of the probe. When the 19 kDa protein bound to PRODAN-G-actin, however, the integrated intensity was reduced and the emission energy was lowered. This effect was exploited to estimate the binding constant for the interaction between the 19 kDa protein and PRODAN-G-actin. The Kd was found to be about 0.25 microM.

2-Naphthylamine↗
PubMed1991

The formation of a paracrystalline structure from muscle F-actin and oligolysine.

At very low ionic strength (gamma less than 0.05) oligohomopolymers of lysine cause lateral association of muscle F-actin filaments into ordered structures which appear at low magnification in electron-micrographs as rigid needles. At higher magnification these aggregates display regular quasicrystalline patterns. The structures dissolve reversibly when the ionic strength is raised suggesting that F-actin filaments are crosslinked by oligolysine due to electrostatic forces.

Actins↗
PubMed1988

Spectroscopic and functional characterization of an environmentally sensitive fluorescent actin conjugate.

Rabbit skeletal muscle F-actin has been selectively labeled at a cysteine residue with the environmentally sensitive fluorophore 6-acryloyl-2-(dimethylamino)naphthalene. The fluorescent actin conjugate behaves similarly to native actin with respect to the polymerization kinetics, critical monomer concentration, and ability to form F-actin paracrystals. Upon polymerization to F-actin, the absorption of the actin conjugate is red-shifted, whereas the fluorescence emission is blue-shifted 740 wavenumbers and is accompanied by a decrease in the fluorescence bandwidth of 470 wavenumbers. These large shifts in the spectral properties of 6-propionyl-2-(dimethylamino)naphthalene (Prodan) in actin provide a simple method for obtaining a spectral discrimination between the G- and F-actin populations during the polymerization reaction. Steady-state fluorescence techniques were used to study the environment of the fluorophore in the monomeric and polymeric forms of actin. Fluorescence emission spectral analysis and quenching and polarization studies of G-actin-Prodan indicated that the fluorophore lies immobile on the protein surface but with one of its faces in full contact with the solvent. In F-actin, the fluorophore has a limited exposure to the solvent and is located in a dielectric environment similar to those seen for Prodan in polar, aprotic solvents or buried within a protein matrix [Macgregor, R. B., Jr., & Weber, G. (1986) Nature (London) 318, 70-73]. Additionally, our results demonstrate that the Prodan molecule conjugated to F-actin is completely immobile during its fluorescence lifetime, exhibits an increase in the resonance energy transfer (RET) from tryptophan residues compared to that observed in G-actin, and shows evidence of homologous RET within the polymer.

2-Naphthylamine↗
PubMed1983

Stability differences of muscle F-actin in formamide in the presence of Mg2+ and Ca2+.

Muscle G-actin was polymerized by addition of 2 mM Mg2+ or 2 mM Ca2+. Subsequent addition of formamide reduced the specific viscosity of the polymer solution. However, kinetic analysis of this reduction in the presence or absence of 0.1 M KCl revealed differences between F-actin formed in the presence of Mg2+ and F-actin formed in the presence of Ca2+. In the presence of Mg2+ the viscosity dropped instantaneously, reaching within minutes a steady-state level that was constant for many hours. In contrast, in the presence of Ca2+ the high-shear viscosity continued to decrease slowly after an initial drop, and it could take hours until a quasi-equilibrium was obtained. The time was dependent on both formamide and protein concentration. Addition of formamide increased the critical actin concentration in the presence of Ca2+, but not in the presence of Mg2+. This is taken as evidence that in the presence of Ca2+, but not in the presence of Mg2+, formamide causes partial depolymerization of F-actin.

Actins↗
PubMed1982

Identification of actin in highly purified synaptic vesicles from the electric organ of Torpedo marmorata.

Evidence has been obtained that actin is a major constituent of highly purified synaptic vesicles isolated from the electric organ of Torpedo marmorata. The mobility of a prominent spot in the polypeptide pattern of vesicles in high-resolution two-dimensional polyacrylamide gel electrophoresis is very similar to the mobility of the main component in the actin preparation purified from the whole electric organ by affinity chromatography on immobilized pancreatic deoxyribonuclease I. The comparison of tryptic peptide maps obtained from the putative vesicle actin and authentic actin from the electric organ, both purified by two-dimensional gel electrophoresis and labeled in situ with 125I, showed about 88% homology, thereby supporting the conclusion that the vesicle actin is indeed an actin isoform.

Actins↗
PubMed1981

Effects of formamide on the polymerization and depolymerization of muscle actin.

Formamide was found to interfere with the polymerization of electrophoretically pure rabbit skeletal muscle G-actin to F-actin in vitro. It decreased the rate as well as the extent of polymerization. However, this influence was dependent on the way the polymerization reaction was initiated. If polymerization of G-actin was induced by 2 mM MgCl2, formamide inhibited the rate and extent of the polymerization much less than if the polymerization was induced by either 2 mM CaCl2 or 0.1 M KCl. The critical protein concentration was increased when formamide was present. This effect was small in the presence of MgCl2 but an approximately tenfold increase in the critical value was observed for the CaCl2-induced or KCl-induced polymerization. Depolymerization of F-actin by molar amounts of formamide was faster and proceeded further when the polymer had been formed in the presence of KCl or CaCl2 than when it been formed in the presence of MgCl2. It is concluded that Mg2+ stabilizes the F-actin structure rendering it more resistant than either Ca2+ or K+ against the destabilizing action of formamide.

Actins↗
PubMed1980

Dissociation of the DNAse-I . actin complex by formamide.

Rabbit skeletal muscle actin labeled with 125 iodine by an enzymic method is shown to be capable of polymerization and to bind to matrix-bound pancreatic DNAse I like unlabeled G-actin. It was used to demonstrate that actin can be released from DNAse-I-agarose by 35--40% formamide. Actin which was only shortly exposed to this solvent was able to bind again to DNAse I and to form filaments indicating that it has been recovered functionally intact from the affinity matrix.

Actins↗
PubMed1980

Isolation of polymerization-competent cytoplasmic actin by affinity chromatography on immobilized DNAse I using formamide as eluant.

Formamide dissociates the G-actin . DNAse-I complex and is therefore suitable as an alternative to the eluant containing 3 M guanidinium hydrochloride, suggested originally by Lazarides and Lindberg [Proc, Natl Acad. Sci. USA, 71, 4742--4746 (1974)], to elute actin from immobilized DNAse-I agarose. Formamide provides the advantage of being a much weaker denaturant than guanidinium hydrochloride and being a nonionic substance. In the concentration necessary for the dissociation of the G-actin . DNAse-I complex (approximately 10 M) formamide denatures actin only slowly (half-time approximately 150 min at 2 degrees C) and thus allows the recovery of a large fraction of actin in a polymerization-competent form from the affinity column. Based on these findings a rapid two-step procedure for the isolation of non-muscle G-actin from cultured cells is described. The actin obtained in high yield and purity (greater than 90%) and can readily polymerize to F-actin.

Actins↗
PubMed1979

Localization of the charge differences in the actins of rabbit skeletal muscle and chicken gizzard by two-dimensional gel electrophoretic analysis of tryptic fragments.

Partial tryptic cleavage products of pure actin from rabbit skeletal muscle and chicken gizzard are compared by two-dimensional electrophoresis in polyacrylamide gels with respect to isoelectric point and molecular weight. While the intact polypeptides (Mr 42,000) have different isoelectric points, two large cleavage products (Mr 35,000) generated from both both actin species have identical isoelectric points and identical molecular weights. These relatively trypsin-resistant cleavage products are presumably identical to the known "core actin" fragments which lack the aminoterminal region of the polypeptide chain. Therefore the differences that are responsible for the different isoelectric points of rabbit skeletal muscle actin and chicken gizzard actin seem to be restricted to the aminoterminal part of the actin polypeptide chains as was proposed on the basis of partial amino acid sequence data.

Actins↗
PubMed1978

Actins from mammals, bird, fish and slime mold characterized by isoelectric focusing in polyacrylamide gels.

Actins isolated from a variety of tissues and cultured cells were compared by isoelectric focusing in polyacrylamide gels in the presence of 9 M urea and 2% Nonidet P40. Actins isolated from muscle tissue with a sarcomeric structure like skeletal muscle and heart muscle invariably display, as previously shown, one single band with a pI of approximately 5.4 (alpha-actin) in isoelectric focusing gels. Actins isolated from mammalian or avian non-muscle tissue and cultured mammalian cells display two polypeptide bands (beta and gamma-actins) focusing at a slightly higher pH than alpha-actin as a closely spaced doublet. A gamma-like actin is the predominant species in chicken gizzard actin. However, this gamma-like form is not isoelectrically identical with gamma-actin from brain. These results are discussed in relation with the currently available amino acid sequence data known for different actins. Actin isolated from the liver of the electric fish Torpedo marmorata appears to consist of a single isoelectric species with an apparent isoelectric point similar to the beta-actin component of mammalian brain. The actin from the slime mold Physarum polycephalum shows only one single major band in isofocusing gels with an isoelectric point lower than that of alpha-actin.

Actins↗
PubMed1977

Degradation of nucleic acids in cell lysates by S1 nuclease in the presence of 9 M urea and sodium dodecylsulfate.

Single-strand-specific nuclease S1 from Aspergillus oryzae is shown to degrade DNA and RNA in lysates of HeLa cells in the presence of 9 M urea and sodium dodecylsulfate. Free dodecylsulfate inhibits S1 nuclease. However, if the detergent is complexed with proteins prior to the addition of the enzyme, S1 nuclease can degrade nucleic acids at dodecylsulfate concentrations which would inhibit the enzyme completely if no other proteins were present. In lysates prepared from HeLa cells by treatment with dodecylsulfate and urea, the detergent is complexed by cellular proteins and therefore S1 nuclease can be used to digest DNA and RNA. DNA can be completely degraded but, even after heat-denaturation, only 60% of the cellular RNA is converted into acid-soluble material. Analysis of the acid-insoluble RNA fragments by gel filtration reveals that the majority of the degradation products is approximately of tRNA size.

Aspergillus oryzae↗
PubMed1975

dnaG gene product, a rifampicin-resistant RNA polymerase, initiates the conversion of a single-stranded coliphage DNA to its duplex replicative form.

The protein responsible for the initiation of conversion of single-stranded phage G4 DNA to the duplex replicative form has been purified approximately 3000-fold and identified with Escherichia coli dnaG gene product. The protein is a rifampicin-resistant RNA polymerase of approximately 64,000 daltons. It catalyzes the incorporation of the four ribonucleoside triphosphates into an oligoribonucleotide, using as template the single-stranded DNA coated with the DNA unwinding protein of E. coli. An RNA transcript of a unique region of the chromosome can serve as a primer by covalent extension by DNA polymerase III holoenzyme to form a nearly full-length linear complementary strand. A similar role for the dnaG protein in the initiation of nascent (Okazaki) fragments in replication of the host chromosome is discussed.

Bacterial Proteins↗
PubMed1975

Replication of phage G4. A novel and simple system for the initiation of deoxyribonucleic acid synthesis.

Conversion in vitro of single-stranded circular DNA of phage G4 (related to phage phiX174) to the double-stranded replicative form (RF-II) depends on a novel and relatively simple group of three proteins: a priming protein of approximately 65,000 daltons, the DNA unwinding protein, and the DNA polymerase III holoenzyme. Stimulation by ATP and GTP suggests an RNA synthetic step in the priming of DNA synthesis. The synthetic strand in the RF-II contains a small gap at a unique position relative to the template strand; the 5' end of the gap is about 250 nucleotide residues (5% of the genome length) away from the single site of cleavage by a restriction endonuclease (Eco RI).

Bacterial Proteins↗