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Kallol Ray

Publications and source records attributed to Kallol Ray.

12 recordsLinked to original sources
PubMed2006

electrochemical generation of a nonheme oxoiron(IV) complex.

The complex [Fe(IV)O(N4Py)]2+ (N4Py = N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine) has been prepared by bulk electrolysis in aqueous CH3CN and CH2Cl2, and its redox properties characterized. Bulk chronocoulometry and spectropotentiometry experiments in CH3CN show that [Fe(II)(N4Py)(NCCH3)]2+ can be oxidized quantitatively to its iron(III) derivative at an applied potential of +0.71 V vs ferrocene and then to the oxoiron(IV) complex (in the presence of added water) at potentials above +1.3 V. The E1/2 value for the Fe(IV/III) couple has been estimated to be +0.90 V from spectropotentiometric titrations in CH3CN and cyclic voltammetric measurements in CH2Cl2.

Electrochemistry↗
PubMed2006

Molecular and electronic structures of oxo-bis(benzene-1,2-dithiolato)chromate(V) monoanions. A combined experimental and density functional study.

Two oxo-bis(benzene-1,2-dithiolato)chromate(V) complexes, namely, [CrO(L(Bu))2]1- and [CrO(L(Me))2]1-, have been synthesized and studied by UV-vis, EPR, magnetic circular dichroism (MCD), and X-ray absorption spectroscopy and by X-ray crystallography; their electro- and magnetochemistries are reported. H2L(Bu) represents the pro-ligand 3,5-di-tert-butylbenzene-1,2-dithiol, and H2L(Me) is the corresponding 4-methyl-benzene-1,2-dithiol. A structural feature of interest for both the complexes is the folding of the dithiolate ligands about the S-S vector providing Cs symmetry to the complexes. Geometry optimizations using all-electron density functional theory with scalar relativistic corrections at the second-order Douglas-Kroll-Hess (DKH2) and zeroth-order regular approximation (ZORA) levels result in excellent agreement with the experimentally determined structures and electronic and S K-edge X-ray absorption spectra. From DFT calculations, the Cs instead of C2v symmetry for the complexes is attributed to the strong S(3p) --> Cr(3d(x2-y2)) pi-donation in Cs geometry providing additional stability to the complexes.

Anions↗
PubMed2006

Vibrational markers for the open-shell character of transition metal bis-dithiolenes: an infrared, resonance raman, and quantum chemical study.

Transition metal complexes involving the benzene-1,2-dithiol (L(2-)) and Sellmann's 3,5-di-tert-butylbenzene-1,2-dithiol(L(Bu 2-)) ligands have been studied by UV-vis, infrared (IR), and resonance Raman (rR) spectroscopies. Raman spectra were obtained in resonance with the intervalence charge transfer (IVCT) bands in the near-infrared region and ligand-to-metal charge transfer (LMCT) bands in the near-UV region. Geometry optimization and frequency calculations using density functional theory (DFT) have been performed for [M(L)(2)](z) and [M(L(Bu))(2)](z) species (M = Ni, Pd, Pt, Co, Cu, Au, z = -1; M = Au, z = 0). On the basis of frequency calculations and normal-mode analysis, we have assigned the most important totally symmetric vibrations as well as corresponding overtone and combination bands that appear in rR spectra of compounds [Ni(L)(2)](1-), [M(L(Bu))(2)](1-) (M = Ni, Pt, Co, Cu). Experimental values of dimensionless normal coordinate displacements in excited states have been determined by fitting of rR spectra together with the absorption band shape, based on the time-dependent theory of Heller. Time-dependent density functional theory (TD-DFT) and multireference post-Hartree-Fock ab initio calculations, using the difference dedicated configuration interaction (MR-DDCI) method, were carried out to evaluate dimensionless normal coordinate displacements quantum chemically. The calculations show encouraging agreement with the experimental values. The large distortions along several normal modes led to significant vibronic broadening of IVCT and LMCT bands, and the broadening was accounted for in the deconvolution of the absorption spectra. The presence of an intense rR band around approximately 1100 cm(-1) was found to be a reliable marker for the presence of sulfur-based radicals.

Journal Article↗
PubMed2005

Electronic structure of square planar bis(benzene-1,2-dithiolato)metal complexes [M(L)(2)](z) (z = 2-, 1-, 0; M = Ni, Pd, Pt, Cu, Au): an experimental, density functional, and correlated ab initio study.

The three diamagnetic square planar complexes of nickel(II), palladium(II), and platinum(II) containing two S,S-coordinated 3,5-di-tert-butylbenzene-1,2-dithiolate ligands, (L(Bu))(2-), namely [M(II)(L(Bu))(2)](2-), have been synthesized. The corresponding paramagnetic monoanions [M(II)(L(Bu))(L(Bu)(*))](-) (S = (1)/(2)) and the neutral diamagnetic species [M(II)(L(Bu)(*))(2)] (M = Ni, Pd, Pt) have also been generated in solution or in the solid state as [N(n-Bu)(4)][M(II)(L(Bu))(L(Bu)(*))] salts. The corresponding complex [Cu(III)(L(Bu))(2)](-) has also been investigated. The complexes have been studied by UV-vis, IR, and EPR spectroscopy and by X-ray crystallography; their electro- and magnetochemistry is reported. The electron-transfer series [M(L(Bu))(2)](2-,-,0) is shown to be ligand based involving formally one (L(Bu)(*))(-) pi radical in the monoanion or two in the neutral species [M(II)(L(Bu)(*))(2)] (M = Ni, Pd, Pt). Geometry optimizations using all-electron density functional theory with scalar relativistic corrections at the second-order Douglas-Kroll-Hess (DKH2) and zeroth-order regular approximation (ZORA) levels result in excellent agreement with the experimentally determined structures and electronic spectra. For the three neutral species a detailed analysis of the orbital structures reveals that the species may best be described as containing two strongly antiferromagnetically interacting ligand radicals. Furthermore, multiconfigurational ab initio calculations using the spectroscopy oriented configuration interaction (SORCI) approach including the ZORA correction were carried out. The calculations predict the position of the intervalence charge-transfer band well. Chemical trends in the diradical characters deduced from the multiconfigurational singlet ground-state wave function along a series of metals and ligands were discussed.

Crystallography, X-Ray↗
PubMed2005

Redox-noninnocence of the S,S'-coordinated ligands in bis(benzene-1,2-dithiolato)iron complexes.

The electronic structures of complexes of iron containing two S,S'-coordinated benzene-1,2-dithiolate, (L)(2)(-), or 3,5-di-tert-butyl-1,2-benzenedithiolate, (L(Bu))(2)(-), ligands have been elucidated in depth by electronic absorption, infrared, X-band EPR, and Mossbauer spectroscopies. It is conclusively shown that, in contrast to earlier reports, high-valent iron(IV) (d(4), S = 1) is not accessible in this chemistry. Instead, the S,S'-coordinated radical monoanions (L(*))(1)(-) and/or (L(Bu)(*))(1)(-) prevail. Thus, five-coordinate [Fe(L)(2)(PMe(3))] has an electronic structure which is best described as [Fe(III)(L)(L(*))(PMe(3))] where the observed triplet ground state of the molecule is attained via intramolecular, strong antiferromagnetic spin coupling between an intermediate spin ferric ion (S(Fe) = (3)/(2)) and a ligand radical (L(*))(1)(-) (S(rad) = (1)/(2)). The following complexes containing only benzene-1,2-dithiolate(2-) ligands have been synthesized, and their electronic structures have been studied in detail: [NH(C(2)H(5))(3)](2)[Fe(II)(L)(2)] (1), [N(n-Bu)(4)](2)[Fe(III)(2)(L)(4)] (2), [N(n-Bu)(4)](2)[Fe(III)(2)(L(Bu))(4)] (3); [P(CH(3))Ph(3)][Fe(III)(L)(2)(t-Bu-py)] (4) where t-Bu-py is 4-tert-butylpyridine. Complexes containing an Fe(III)(L(*))(L)- or Fe(III)(L(Bu))(L(Bu)(*))- moiety are [N(n-Bu)(4)][Fe(III)(2)(L(Bu))(3)(L(Bu)(*))] (3(ox)()), [Fe(III)(L)(L(*))(t-Bu-py)] (4(ox)()), [Fe(III)(L(Bu))(L(Bu)(*))(PMe(3))] (7), [Fe(III)(L(Bu))(L(Bu)(*))(PMe(3))(2)] (8), and [Fe(III)(L(Bu))(L(Bu)(*))(PPr(3))] (9), where Pr represents the n-propyl substituent. Complexes 2, 3(ox)(), 4, [Fe(III)(L)(L(*))(PMe(3))(2)] (6), and 9 have been structurally characterized by X-ray crystallography.

Journal Article↗
PubMed2005

The electronic structure of the isoelectronic, square-planar complexes [FeII(L)2]2- and [CoIII(L Bu)2]- (L2- and (L Bu)2-=benzene-1,2-dithiolates): an experimental and density functional theoretical study.

The electronic structures of two formally isoelectronic transition-metal dithiolato complexes [Fe(L)2]2- (1) and [Co(L Bu)2]1- (2) both possessing a spin triplet ground state (St=1) have been investigated by various spectroscopic and density functional methods; H2L Bu represents the pro-ligand 3,5-di-tert-butylbenzene-1,2-dithiol and H2L is the corresponding unsubstituted benzene-1,2-dithiol. An axial zero-field splitting (D) of +32 cm(-1) for 2 has been measured independently by SQUID magnetometry, far-infrared absorption, and variable-temperature and variable-field (VTVH) magnetic circular dichroism spectroscopies. A similar D value of +28 cm(-1) is obtained for 1 on the basis of VTVH SQUID measurements. The absorption spectra of 1 and 2 are found, however, to be very different. Complex 1 is light yellow in color with no intense transition in the visible region, whereas 2 is deep blue. DFT calculations establish that the electronic structures of the [Fe(L)2](2-) and [Co(L)2]1- anions are very different and explain the observed differences in their absorption spectra. On the basis of these spectroscopic and theoretical analyses, 1 is best described as containing an intermediate spin FeII ion, whereas for the corresponding cobalt complex, oxidation states describing a d6 (CoIII) or d7 (CoII) electron configuration cannot be unambiguously assigned. The physical origin of the large zero-field splitting in both 1 and 2 is found to be due to the presence of low-energy spin-conserved d-d excitations which lead to a large Dzz through efficient spin-orbit coupling. Differential covalency effects appear to be of limited importance for this property.

Journal Article↗
PubMed2004

Molecular and electronic structure of four- and five-coordinate cobalt complexes containing two o-phenylenediamine- or two o-aminophenol-type ligands at various oxidation levels: an experimental, density functional, and correlated ab initio study.

The bidentate ligands N-phenyl-o-phenylenediamine, H(2)((2)L(N)IP), or its analogue 2-(2-trifluoromethyl)anilino-4,6-di-tert-butylphenol, ((4)L(N)IP), react with [Co(II)(CH(3)CO(2))(2)]4H(2)O and triethylamine in acetonitrile in the presence of air yielding the square-planar, four-coordinate species [Co((2)L(N))(2)] (1) and [Co((4)L(O))(2)] (4) with an S=1/2 ground state. The corresponding nickel complexes [Ni((4)L(O))(2)] (8) and its cobaltocene reduced form [Co(III)(Cp)(2)][Ni((4)L(O))(2)] (9) have also been synthesized. The five-coordinate species [Co((2)L(N))(2)(tBu-py)] (2) (S=1/2) and its one-electron oxidized forms [Co((2)L(N))(2)(tBu-py)](O(2)CCH(3)) (2 a) or [Co((2)L(N))(2)I] (3) with diamagnetic ground states (S=0) have been prepared, as has the species [Co((4)L(O))(2)(CH(2)CN)] (7). The one-electron reduced form of 4, namely [Co(Cp)(2)][Co((4)L(O))(2)] (5) has been generated through the reduction of 4 with [Co(Cp)(2)]. Complexes 1, 2, 2 a, 3, 4, 5, 7, 8, and 9 have been characterized by X-ray crystallography (100 K). The ligands are non-innocent and may exist as catecholate-like dianions ((2)L(N)IP)(2-), ((4)L(N)IP)(2-) or pi-radical semiquinonate monoanions ((2)L(N)ISQ)(*) (-), ((4)L(N)ISQ)(*) (-) or as neutral benzoquinones ((2) L(N)IBQ)(0), ((4) L(N)IBQ)(0); the spectroscopic oxidation states of the central metal ions vary accordingly. Electronic absorption, magnetic circular dichroism, and EPR spectroscopy, as well as variable temperature magnetic susceptibility measurements have been used to experimentally determine the electronic structures of these complexes. Density functional theoretical (DFT) and correlated ab initio calculation have been performed on the neutral and monoanionic species [Co((1)L(N))(2)](0,-) in order to understand the structural and spectroscopic properties of complexes. It is shown that the corresponding nickel complexes 8 and 9 contain a low-spin nickel(II) ion regardless of the oxidation level of the ligand, whereas for the corresponding cobalt complexes the situation is more complicated. Spectroscopic oxidation states describing a d(6) (Co(III)) or d(7) (Co(II)) electron configuration cannot be unambiguously assigned.

Journal Article↗
PubMed2004

A novel soluble protein factor with non-opioid dynorphin A-binding activity.

A novel soluble non-opioid dynorphin A-binding factor (DABF) was identified and characterized in neuronal cell lines, rat spinal cord, and brain. DABF binds dynorphin A(1-17), dynorphin A(2-17), and the 32 amino acid prodynorphin fragment big dynorphin consisting of dynorphin A and B, but not other opioid and non-opioid peptides, opiates, and benzomorphans. The IC50 for dynorphin A(1-17), dynorphin A(2-17), and big dynorphin is in the 5-10 nM range. Using dynorphin A and big dynorphin fragments a binding epitope was mapped to dynorphin A(6-13). DABF has a molecular mass of about 70 kDa. SH-groups are apparently involved in the binding of dynorphin A since p-hydroxy-mercuribenzoic acid inhibited this process. Upon interaction with DABF dynorphin A was converted into Leu-enkephalin, which remained bound to the protein. These data suggest that DABF functions as an oligopeptidase that forms stable and specific complexes with dynorphin A. The presence of DABF in brain structures and other tissues with low level of prodynorphin expression suggests that DABF as an oligopeptidase may degrade other peptides. Dynorphin A at the sites of its release in the CNS may attenuate this degradation as a competitor when it specifically binds to the enzyme.

Animals↗
PubMed2004

Crystal structure of human thimet oligopeptidase provides insight into substrate recognition, regulation, and localization.

Thimet oligopeptidase (TOP) is a zinc metallopeptidase that metabolizes a number of bioactive peptides and degrades peptides released by the proteasome, limiting antigenic presentation by MHC class I molecules. We present the crystal structure of human TOP at 2.0-A resolution. The active site is located at the base of a deep channel that runs the length of the elongated molecule, an overall fold first seen in the closely related metallopeptidase neurolysin. Comparison of the two related structures indicates hinge-like flexibility and identifies elements near one end of the channel that adopt different conformations. Relatively few of the sequence differences between TOP and neurolysin map to the proposed substrate-binding site, and four of these variable residues may account for differences in substrate specificity. In addition, a loop segment (residues 599-611) in TOP differs in conformation and degree of order from the corresponding neurolysin loop, suggesting it may also play a role in activity differences. Cysteines thought to mediate covalent oligomerization of rat TOP, which can inactivate the enzyme, are found to be surface-accessible in the human enzyme, and additional cysteines (residues 321,350, and 644) may also mediate multimerization in the human homolog. Disorder in the N terminus of TOP indicates it may be involved in subcellular localization, but a potential nuclear import element is found to be part of a helix and, therefore, unlikely to be involved in transport. A large acidic patch on the surface could potentially mediate a protein-protein interaction, possibly through formation of a covalent linkage.

Amino Acid Sequence↗
PubMed2003

Do S,S'-coordinated o-dithiobenzosemiquinonate(1-) radicals exist in coordination compounds? the [AuIII(1,2-C6H4S2)2]1 -/0 couple.

The square planar, light-green, diamagnetic complex [N(n-Bu)(4)][Au(III)(L(t)()(-)(Bu))(2)] (1) reacts with iodine in acetone affording the neutral paramagnetic species [Au(L(t)()(-)(Bu))(2)] (1a) (S = (1)/(2)) where H(2)[L(t)()(-)(Bu)] represents the ligand 3,5-di-tert-butyl-1,2-benzenedithiol. The corresponding complexes containing the unsubstituted ligand H(2)[L], 1,2-benzenedithiol, namely [N(n-Bu)(3)H][Au(L)(2)] (2) and [Au(L)(2)] (2a), have also been prepared and characterized by X-ray crystallography; the structure of the latter has been reported in ref 10. (197)Au Mössbauer spectra of 1 and 1a clearly show that the one-electron oxidation is ligand-centered and does not involve the formation of Au(IV) (d(7)). The spectroscopic features of the ligand mixed-valent species 1a were determined by UV-vis, EPR, and IR spectroscopy which allows the detection of S,S-coordinated 1,2-dithiobenzosemiquinonate(1-) radicals in coordination compounds.

Journal Article↗
PubMed2002

Mapping sequence differences between thimet oligopeptidase and neurolysin implicates key residues in substrate recognition.

The highly homologous endopeptidases thimet oligopeptidase and neurolysin are both restricted to short peptide substrates and share many of the same cleavage sites on bioactive and synthetic peptides. They sometimes target different sites on the same peptide, however, and defining the determinants of differential recognition will help us to understand how both enzymes specifically target a wide variety of cleavage site sequences. We have mapped the positions of the 224 surface residues that differ in sequence between the two enzymes onto the surface of the neurolysin crystal structure. Although the deep active site channel accounts for about one quarter of the total surface area, only 11% of the residue differences map to this region. Four isolated sequence changes (R470/E469, R491/M490, N496/H495, and T499/R498; neurolysin residues given first) are well positioned to affect recognition of substrate peptides, and differences in cleavage site specificity can be largely rationalized on the basis of these changes. We also mapped the positions of three cysteine residues believed to be responsible for multimerization of thimet oligopeptidase, a process that inactivates the enzyme. These residues are clustered on the outside of one channel wall, where multimerization via disulfide formation is unlikely to block the substrate-binding site. Finally, we mapped the regulatory phosphorylation site in thimet oligopeptidase to a location on the outside of the molecule well away from the active site, which indicates this modification has an indirect effect on activity.

Amino Acid Sequence↗