Biomedical subjects

Ken D Shimizu

Publications and source records attributed to Ken D Shimizu.

11 recordsLinked to original sources

PubMed2006

Rapid screening of a receptor with molecular memory.

[reaction: see text] Atropisomeric receptor 1 can change conformation and maintain the new conformation when heated and cooled in the presence of a guest molecule. This molecular memory can be used as a rapid method of screening potential guests. Heating atropisomeric diacid 1 with various hydrogen-bonding guests leads to a shift in the syn/anti ratio that could be easily monitored as it is stable at room temperature even in the absence of the guest molecules.

Journal Article↗

PubMed2005

Conformationally imprinted receptors: atropisomers with "write", "save", and "erase" recognition properties.

[reaction: see text] An atropisomeric receptor with "write", "save", and "erase" recognition properties is presented. The receptor adopts a complementary conformation when heating in the presence of an ethyl adenine-9-acetate guest molecule. This complementary hydrogen bonding conformation is "saved" upon cooling to room temperature due to the reestablishment of restricted rotation and is stable even upon removal of the guest. Finally, the atropisomeric receptor can be "erased" by heating in the absence of the guest.

Acetates↗

PubMed2005

Colorimetric molecularly imprinted polymer sensor array using dye displacement.

A colorimetric sensor array composed of seven molecularly imprinted polymers was shown to accurately identify seven different aromatic amines. The response patterns were systematically classified using linear discriminant analysis with 94% classification accuracy. Analyses of the response patterns of the analytes to the imprinted polymer array suggest that the different selectivity patterns, although subtle, appear to arise from the imprinting process. The molecular imprinting process enabled the rapid preparation of the polymers in the array from ethylene glycol dimethacrylate and methacrylic acid (80:20) in the presence of six different template molecules plus a blank nonimprinted polymer. The response of the imprinted polymer array was coupled to a colorimetric response, using a dye displacement strategy. A benzofurazan dye was selected and shown to give an accurate measure of the binding properties of the imprinted polymer array to all seven analytes. The colorimetric response also enabled the inclusion of analytes that are not spectroscopically active and were not among the original analytes that were used as template molecules. This broadens the potential utility of the imprinted polymer sensor array strategy to a wider range of analytes and applications.

Benzoxazoles↗

PubMed2005

Carbohydrate recognition by porphyrin-based molecularly imprinted polymers.

[structure: see text] Porphyrin-based molecularly imprinted polymers (MIPs) were prepared for carbohydrate recognition. A urea-appended porphyrin functional monomer was utilized to provide complementary functionality and quality binding sites throughout the polymer. Each porphyrin-based polymer demonstrates high affinity and differential selectivity for closely related carbohydrates that correlate to the structure of the template used in the imprinting process.

Binding Sites↗

PubMed2004

Characterization of the heterogeneous binding site affinity distributions in molecularly imprinted polymers.

Molecularly imprinted polymers (MIPs) are polymers that can be tailored with affinity and selectivity for a molecule of interest. Offsetting the low cost and ease of preparation of MIPs is the presence of binding sites that vary widely in affinity and selectivity. Presented is a review of methods that take into account binding site heterogeneity when calculating the binding properties of MIPs. These include the bi-Langmuir, Freundlich, and Langmuir-Freundlich binding models. These methods yield a measure of heterogeneity in the form of binding site affinity distributions and the heterogeneity index. Recent developments have made these methods surprisingly easy to use while also yielding more accurate measures of the binding properties of MIPs. These have allowed for easier comparison and optimization of MIPs. Heterogeneous binding models have also led to a better understanding of the imprinting process and of the advantages and limitations of MIPs in chromatographic and sensor applications.

Binding Sites↗

PubMed2004

Molecularly imprinted polymer sensor arrays.

An eight channel molecularly imprinted polymer sensor array was prepared that was able to differentiate six different aryl amine analytes, including diastereomers with 94% accuracy.

Polymers↗

PubMed2004

Characterization of the imprint effect and the influence of imprinting conditions on affinity, capacity, and heterogeneity in molecularly imprinted polymers using the Freundlich isotherm-affinity distribution analysis.

Molecularly imprinted polymers (MIPs) have been used in a wide range of analytical applications in particular in chromatography and sensing. However, the binding properties in MIPs are typically measured only in a narrow concentration range, which corresponds to only a subset of the sites in MIPs. This limited analytical window and binding site heterogeneity of MIPs leads to inaccuracies and inconsistencies in the estimation of their binding properties. This has hampered the characterization and optimization of MIPs for analytical applications. In this study, the origins of the molecular imprinting effect were studied using the newly developed Freundlich isotherm-affinity distribution (FIAD) analysis. The analysis is able to readily calculate an affinity distribution for MIPs from the limited analytical window. The FIAD analysis also yields an estimate of number, affinity, and heterogeneity for this subset of binding sites. Consistent with previous studies, MIPs were found to have higher capacities than the corresponding nonimprinted polymers (NIPs). Interestingly, MIPs were also found to be more heterogeneous than NIPs. Examination of variables in the imprinting process including temperature, template concentration, and cross-linking percentages further confirmed these trends. Based on these observations, a model for the imprinting effect was developed. The larger population of high-affinity sites in MIPs appears to arise from a broadening of the heterogeneous distribution. This suggests that noncovalent MIPs may be ill-suited for chromatographic applications and other applications that are detrimentally affected by binding site heterogeneity and better suited to applications that are less affected by heterogeneity such as sensing.

Journal Article↗

PubMed2003

Self-assembled nanotubes that reversibly bind acetic acid guests.

A large bis-urea macrocycle was synthesized and assembled into columnar nanotubes containing a sizable cavity. This purely organic nanotube is held together primarily by hydrogen bonding and yet shows remarkable thermal stability up to 180 degrees C in the presence and absence of acetic acid guest. This enables the nanotube to be used as reusable organic zeolite.

Acetic Acid↗

PubMed2002

Surface-catalyzed transformations of aqueous endosulfan.

We report the effect of suspended solids on the oxidation and hydrolysis of the insecticide endosulfan (alpha and beta isomers) and its degradation products: endosulfan diol, endosulfan sulfate, endosulfan ether, and endosulfan lactone in 0.001 M NaHCO3 buffer (pH 8.15). Suspensions of sea sand, TiO2, alpha-Fe2O3, alpha-FeOOH, Laponite, and SiO2 all catalyzed the hydrolysis of endosulfan to the less toxic endosulfan diol. Suspended creek sediment (Bread and Butter Creek SC, 4% OC) inhibited endosulfan hydrolysis. Heterogeneous and homogeneous rate constants of endosulfan hydrolysis were measured and indicate that beta-endosulfan hydrolyzes faster than alpha-endosulfan. This observation was explained by a more stable transition state for beta-endosulfan that was confirmed with ab initio molecular orbital calculations (STO-6G) on the anionic intermediates of endosulfan hydrolysis. Rates of endosulfan hydrolysis over the different surfaces corresponded to their tritium-exchange site-density and suggest a mechanism involving surface coordination prior to nucleophilic attack. The oxidation of alpha-endosulfan and beta-endosulfan to the persistent pollutant endosulfan sulfate was not observed in this study.

Catalysis↗

PubMed2002

Measurement of enantiomeric excess using molecularly imprinted polymers.

[reaction: see text] A new method is presented for the measurement of enantiomeric excess (ee) utilizing molecularly imprinted polymers (MIPs). The method is demonstrated to be accurate and rapid, as the ee values can be calculated from straightforward concentration measurements. The MIP-based assay can also be adapted to measure the ee of samples of differing initial concentrations.

Binding Sites↗

PubMed2002

A chiral 28-membered macrocycle with symmetry and structure similar to that of trans-cyclooctene.

[reaction: see text] A bridged N,N-di(aryl)-1,2,4,5-benzenediimide was synthesized in which restricted rotation led to two diasteriomeric conformations at room temperature. The more stable syn-macrocycle is achiral, whereas the strained anti-macrocycle possesses planar chirality similar to that of trans-cyclooctene. The structure was characterized by X-ray crystallography, and the enantiomers were resolved by chiral chromatography.

Journal Article↗