Biomedical subjects

Kenneth M Kemner

Publications and source records attributed to Kenneth M Kemner.

13 recordsLinked to original sources

PubMed2006

Uranium and technetium bio-immobilization in intermediate-scale physical models of an in situ bio-barrier.

We investigated the long-term effects of ethanol addition on U and Tc mobility in groundwater flowing through intermediate-scale columns packed with uncontaminated sediments. The columns were operated above-ground at a contaminated field site to serve as physical models of an in situ bio-barrierfor U and Tc removal from groundwater. Groundwater containing 4 microM U and 520 pM Tc was pumped through the columns for 20 months. One column received additions of ethanol to stimulate activity of indigenous microorganisms; a second column received no ethanol and served as a control. U(VI) and Tc(VII) removal was sustained for 20 months (approximately 189 pore volumes) in the stimulated column under sulfate- and Fe(III)-reducing conditions. Less apparent microbial activity and only minor removal of U(VI) and Tc(VII) were observed in the control. Sequential sediment extractions and XANES spectra confirmed that U(IV) was present in the stimulated column, although U(IV) was also detected in the control; extremely low concentrations precluded detection of Tc(IV) in any sample. These results provide additional evidence that bio-immobilization may be effective for removing U and Tc from groundwater. However, long-term effectiveness of bio-immobilization may be limited by hydraulic conductivity reductions or depletion of bioavailable Fe(III).

Bacteria↗

PubMed2006

Evidence of a stable uranyl site in ancient organic-rich calcite.

The mechanism of uranium (U) incorporation into calcite (calcium carbonate) is of fundamental importance to the fate and transport of U at the surface and in the shallow subsurface and has implications for (a) the accuracy of U-Pb and U-series isotope ratio methods used to determine the ages of ancient deposits and (b) potential remediation strategies based on sequestration of U in the subsurface. Extended X-ray absorption fine structure (EXAFS) spectroscopy is uniquely suited to the study of U-calcite systems. The sensitivity of the EXAFS spectrum to the local atomic Ca coordination about U(VI) in the calcite structure results in an increase in the number and amplitude of Ca signals as the U(VI) becomes more ordered within the crystal structure. Our X-ray microprobe (10-microm) measurements of an ancient 298 million-year-old organic-rich calcite (calcrete) clearly revealed three coordination shells of Ca atoms, defining a well-ordered calcite structure about uranyl to a distance of approximately 6.5 angstroms. These results indicate that uranyl is incorporated at the Ca2+ site in calcite and that the uranyl environment may evolve over long time scales, becoming more calcite-like and more stable for long-term sequestration of uranium. These results therefore validate U-related dating methods and show that calcite can be effective at sequestering U in vadose zone sediments.

Calcium Carbonate↗

PubMed2006

c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis.

Modern approaches for bioremediation of radionuclide contaminated environments are based on the ability of microorganisms to effectively catalyze changes in the oxidation states of metals that in turn influence their solubility. Although microbial metal reduction has been identified as an effective means for immobilizing highly-soluble uranium(VI) complexes in situ, the biomolecular mechanisms of U(VI) reduction are not well understood. Here, we show that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracellular UO(2) nanoparticles. In particular, the outer membrane (OM) decaheme cytochrome MtrC (metal reduction), previously implicated in Mn(IV) and Fe(III) reduction, directly transferred electrons to U(VI). Additionally, deletions of mtrC and/or omcA significantly affected the in vivo U(VI) reduction rate relative to wild-type MR-1. Similar to the wild-type, the mutants accumulated UO(2) nanoparticles extracellularly to high densities in association with an extracellular polymeric substance (EPS). In wild-type cells, this UO(2)-EPS matrix exhibited glycocalyx-like properties and contained multiple elements of the OM, polysaccharide, and heme-containing proteins. Using a novel combination of methods including synchrotron-based X-ray fluorescence microscopy and high-resolution immune-electron microscopy, we demonstrate a close association of the extracellular UO(2) nanoparticles with MtrC and OmcA (outer membrane cytochrome). This is the first study to our knowledge to directly localize the OM-associated cytochromes with EPS, which contains biogenic UO(2) nanoparticles. In the environment, such association of UO(2) nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O(2) or transport in soils and sediments.

Bacterial Outer Membrane Proteins↗

PubMed2005

Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment.

The fate of uranium in natural systems is of great environmental importance. X-ray absorption near-edge spectroscopy (XANES) revealed that U(VI) was reduced to U(IV) in shallow freshwater sediment at an open pit in an inactive uranium mine. Geochemical characterization of the sediment showed that nitrate, Fe(III), and sulfate had also been reduced in the sediment. Observations of the sediment particles and microbial cells by scanning and transmission electron microscopy, coupled with elemental analysis by energy dispersive spectroscopy, revealed that uranium was concentrated at microbial cell surfaces. U(IV) was not associated with framboidal pyrite or nanometer-scale iron sulfides, which are presumed to be of microbial origin. Uranium concentrations were not detected in association with algal cells. Phylogenetic analyses of microbial populations in the sediment by the use of 16S rRNA and dissimilatory sulfite reductase gene sequences detected organisms belonging to the families Geobacteraceae and Desulfovibrionaceae. Cultivated members of these lineages reduce U(VI) and precipitate iron sulfides. The association of uranium with cells, but not with sulfide surfaces, suggests that U(VI) is reduced by the enzymatic activities of microorganisms. Uranium was highly enriched (760 ppm) in a subsurface black layer in unsaturated sediment sampled from a pit which was exposed to seasonal fluctuations in the pond level. XANES analysis showed that the majority of uranium in this layer was U(IV), indicating that uranium is preserved in its reduced form after burial.

DNA, Bacterial↗

PubMed2004

Microbial reduction of U(VI) at the solid-water interface.

Microbial (Geobacter sulfurreducens) reduction of 0.1 mM U(VI) in the presence of synthetic Fe(III) oxides and natural Fe(III) oxide-containing solids was investigated in pH 6.8 artificial groundwater containing 10 mM NaHCO3. In most experiments, more than 95% of added U(VI) was sorbed to solids, so that U(VI) reduction was governed by reactions at the solid-water interface. The rate and extent of reduction of U(VI) associated with surfaces of synthetic Fe(III) oxides (hydrous ferric oxide, goethite, and hematite) was comparable to that observed during reduction of aqueous U(VI). In contrast, microbial reduction of U(VI) sorbed to several different natural Fe(III) oxide-containing solids was slower and less extensive compared to synthetic Fe(III) oxide systems. Addition of the electron shuttling agent anthraquinone-2,6-disulfonate (AQDS; 0.1 mM) enhanced the rate and extent of both Fe(III) and U(VI) reduction. These findings suggest that AQDS facilitated electron transfer from G. sulfurreducens to U(VI) associated with surface sites atwhich direct enzymatic reduction was kinetically limited. Our results demonstrate that association of U(VI) with diverse surface sites in natural soils and sediments has the potential to limit the rate and extent of microbial U(VI) reduction and thereby modulate the effectiveness of in situ U(VI) bioremediation.

Anthraquinones↗

PubMed2004

Elemental and redox analysis of single bacterial cells by x-ray microbeam analysis.

High-energy x-ray fluorescence measurements were used to make elemental maps and qualitative chemical analyses of individual Pseudomonas fluorescens strain NCIMB 11764 cells. Marked differences between planktonic and adhered cells were seen in the morphology, elemental composition, and sensitivity to Cr(VI) of hydrated cells at spatial scales of 150 nm. This technology can be applied to natural geomicrobiological systems.

Bacterial Adhesion↗

PubMed2003

Effects of Ag(I), Au(III), and Cu(II) on the reductive dechlorination of carbon tetrachloride by green rust.

Green rusts (GRs), mixed iron(II)/iron(III) hydroxide minerals found in many suboxic environments, have been shown to reduce a range of organic and inorganic contaminants, including several chlorinated hydrocarbons. Many studies have demonstrated the catalytic activity of transition metal species in the reduction of chlorinated hydrocarbons, suggesting the potential for enhanced reduction by GR in the presence of an appropriate transition metal catalyst. Reductive dechlorination of carbon tetrachloride (CT) was examined in aqueous suspensions of GR amended with Ag(I), Au(III), or Cu(II). The CT reduction rates were greatly increased for systems amended with Cu(II), Au(III), and Ag(I) (listed in order of increasing rates) relative to GR alone. Observed intermediates and products included chloroform, dichloromethane, chloromethane, methane, acetylene, ethene, ethane, carbon monoxide, tetrachloroethene, and various nonchlorinated C3 and C4 compounds. Product distributions for the reductive dechlorination of CT were highly dependent on the transition metal used. A reaction pathway scheme is proposed in which CT is reduced primarily to methane and other nonchlorinated end products, largely through a series of one-electron reductions forming radicals and carbenes/carbenoids. Recently, X-ray absorption fine structure analysis of aqueous GR suspensions amended with Ag(I), Au(III), or Cu(II) showed that the metals were reduced to their zerovalent forms. A possible mechanism for CT reduction is the formation of a galvanic couple involving the zerovalent metal and GR, with reduction of CT occurring on the surface of the metal and GR serving as the bulk electron source. The enhanced reduction of CT by GR suspensions amended with Ag(I), Au(III), or Cu(II) may prove useful in the development of improved materials for remediation of chlorinated organic contaminants.

Carbon Tetrachloride↗

PubMed2003

Inhibition of bacterial U(VI) reduction by calcium.

The rapid kinetics of bacterial U(VI) reduction and low solubility of uraninite (UO2,cr) make this process an attractive option for removing uranium from groundwater. Nevertheless, conditions that may promote or inhibit U(VI) reduction are not well-defined. Recent descriptions of Ca-UO2-CO3 complexes indicate that these species may dominate the aqueous speciation of U(VI) in many environments. We monitored the bacterial reduction of U(VI) in bicarbonate-buffered solution in the presence and absence of Ca. XAFS measurements confirmed the presence of a Ca-U(VI)-C03 complex in the initial solutions containing calcium. Calcium, at millimolar concentrations (0.45-5 mM), caused a significant decrease in the rate and extent of bacterial U(VI) reduction. Both facultative (Shewanella putrefaciens strain CN32) and obligate (Desulfovibrio desulfuricans, Geobacter sulfurreducens) anaerobic bacteria were affected by the presence of calcium. Reduction of U(VI) ceased when the calculated system Eh reached -0.046 +/- 0.001 V, based on the Ca2UO2(CO3)3 --> UO2,cr couple. The results are consistent with the hypothesis that U is a less energetically favorable electron acceptor when the Ca-UO2-CO3 complexes are present. The results do not support Ca inhibition caused by direct interactions with the cells or with the electron donor as the reduction of fumarate or Tc(VII)O4- under identical conditions was unaffected by the presence of Ca.

Bacteria, Anaerobic↗

PubMed2003

Reduction of uranium(VI) by mixed iron(II)/iron(III) hydroxide (green rust): formation of UO2 nanoparticles.

Green rusts, which are mixed ferrous/ferric hydroxides, are found in many suboxic environments and are believed to play a central role in the biogeochemistry of Fe. Analysis by U LIII-edge X-ray absorption near edge spectroscopy of aqueous green rust suspensions spiked with uranyl (U(VI)) showed that U(VI) was readily reduced to U(IV) by green rust The extended X-ray absorption fine structure (EXAFS) date for uranium reduced by green rust indicate the formation of a UO2 phase. A theoretical model based on the crystal structure of UO2 was generated by using FEFF7 and fitted to the data for the UO2 standard and the uranium in the green rust samples. The model fits indicate that the number of nearest-neighbor uranium atoms decreases from 12 for the UO2 structure to 5.4 forthe uranium-green rust sample. With an assumed four near-neighbor uranium atoms per uranium atom on the surface of UO2, the best-fit value for the average number of uranium atoms indicates UO2 particles with an average diameter of 1.7 +/- 0.6 nm. The formation of nanometer-scale particles of UO2, suggested by the modeling of the EXAFS data, was confirmed by high-resolution transmission electron microscopy, which showed discrete particles (approximately 2-9 nm in diameter) of crystalline UO2. Our results clearly indicate that U(VI) (as soluble uranyl ion) is readily reduced by green rust to U(IV) in the form of relatively insoluble UO2 nanoparticles, suggesting that the presence of green rusts in the subsurface may have significant effects on the mobility of uranium, particularly under iron-reducing conditions.

Ferric Compounds↗

PubMed2003

Reduction of Ag(I), Au(III), Cu(II), and Hg(II) by Fe(II)/Fe(III) hydroxysulfate green rust.

Green rusts are mixed Fe(II)/Fe(III) hydroxides that are found in many suboxic environments where they are believed to play a central role in the biogeochemical cycling of iron. X-ray absorption fine structure analysis of hydroxysulfate green rust suspensions spiked with aqueous solutions of AgCH(3)COO, AuCl(n)(OH)(4-n), CuCl(2), or HgCl(2) showed that Ag(I), Au(III), Cu(II), and Hg(II) were readily reduced to Ag(0), Au(0), Cu(0), and Hg(0). Imaging of the resulting solids from the Ag(I)-, Au(III)-, and Cu(II)-amended green rust suspensions by transmission electron microscopy indicated the formation of submicron-sized particles of Ag(0), Au(0), and Cu(0). The facile reduction of Ag(I), Au(III), Cu(II), and Hg(II) to Ag(0), Au(0), Cu(0), and Hg(0), respectively, by green rust suggests that the presence of green rusts in suboxic soils and sediments can have a significant impact on the biogeochemistry of silver, gold, copper, and mercury, particularly with respect to their mobility.

Electron Probe Microanalysis↗

PubMed2003

Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment.

Uranium-contaminated sediment and water collected from an inactive uranium mine were incubated anaerobically with organic substrates. Stimulated microbial populations removed U almost entirely from solution within 1 month. X-ray absorption near-edge structure analysis showed that U(VI) was reduced to U(IV) during the incubation. Observations by transmission electron microscopy, selected area diffraction pattern analysis, and energy-dispersive X-ray spectroscopic analysis showed two distinct types of prokaryotic cells that precipitated only a U(IV) mineral uraninite (UO(2)) or both uraninite and metal sulfides. Prokaryotic cells associated with uraninite and metal sulfides were inferred to be sulfate-reducing bacteria. Phylogenetic analysis of 16S ribosomal DNA obtained from the original and incubated sediments revealed that microbial populations were changed from microaerophilic Proteobacteria to anaerobic low-G+C gram-positive sporeforming bacteria by the incubation. Forty-two out of 94 clones from the incubated sediment were related to sulfate-reducing Desulfosporosinus spp., and 23 were related to fermentative Clostridium spp. The results suggest that, if in situ bioremediation were attempted in the uranium mine ponds, Desulfosporosinus spp. would be a major contributor to U(VI) and sulfate reduction and Clostridium spp. to U(VI) reduction.

Anaerobiosis↗

PubMed2002

Nanometre-size products of uranium bioreduction.

One strategy that is being pursued to tackle the international problem of actinide contamination of soils, sediments and water is to use microbial activity to 'fix' these radionuclides into an insoluble form that cannot be readily dispersed. Here we show that uraninite (UO(2)) particles formed from uranium in sediments by bacterial reduction are typically less than 2 nanometres across and that the small size has important implications for uraninite reactivity and fate. Because these tiny particles may still be transported in an aqueous environment, precipitation of uranium as insoluble uraninite cannot be presumed to immobilize it.

Anaerobiosis↗

PubMed2002

Immobilization of radionuclides and heavy metals through anaerobic bio-oxidation of Fe(II).

Adsorption of heavy metals and radionuclides (HMR) onto iron and manganese oxides has long been recognized as an important reaction for the immobilization of these compounds. However, in environments containing elevated concentrations of these HMR the adsorptive capacity of the iron and manganese oxides may well be exceeded, and the HMR can migrate as soluble compounds in aqueous systems. Here we demonstrate the potential of a bioremediative strategy for HMR stabilization in reducing environments based on the recently described anaerobic nitrate-dependent Fe(II) oxidation by Dechlorosoma species. Bio-oxidation of 10 mM Fe(II) and precipitation of Fe(III) oxides by these organisms resulted in rapid adsorption and removal of 55 microM uranium and 81 microM cobalt from solution. The adsorptive capacity of the biogenic Fe(III) oxides was lower than that of abiotically produced Fe(III) oxides (100 microM for both metals), which may have been a result of steric hindrance by the microbial cells on the iron oxide surfaces. The binding capacity of the biogenic oxides for different heavy metals was indirectly correlated to the atomic radius of the bound element. X-ray absorption spectroscopy indicated that the uranium was bound to the biogenically produced Fe(III) oxides as U(VI) and that the U(VI) formed bidentate and tridentate inner-sphere complexes with the Fe(III) oxide surfaces. Dechlorosoma suillum oxidation was specific for Fe(II), and the organism did not enzymatically oxidize U(IV) or Co(II). Small amounts (less than 2.5 microM) of Cr(III) were reoxidized by D. suillum; however, this appeared to be inversely dependent on the initial concentration of the Cr(III). The results of this study demonstrate the potential of this novel approach for stabilization and immobilization of HMR in the environment.

Anaerobiosis↗