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Krishnan Raghavachari

Publications and source records attributed to Krishnan Raghavachari.

11 recordsLinked to original sources

The emergence of collective vibrations in cluster models: quantum chemical study of the methyl-terminated Si(111) surface.

In this paper we present structures and harmonic vibrational frequencies for the methylated silicon (111) surface from quantum chemical calculations using both cluster models and periodic boundary conditions. The results from both calculations are in very good agreement with experimentally determined frequencies. We demonstrate that relatively small cluster models already show the emergence of collective vibrational modes and provide a general method for the assignment of vibrational frequencies for extended surfaces from cluster models. Finally, we discuss a vibrational mode that results from the coupling between near-surface phonons and the silicon-carbon bending modes.

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Addition of NH3 to Al3O3-.

Recent computational studies on the addition of ammonia (NH3) to the Al3O3- cluster anion [A. Guevara-Garcia, A. Martinez, and J. V. Ortiz, J. Chem. Phys. 122, 214309 (2005)] have motivated experimental and additional computational studies, reported here. Al3O3- is observed to react with a single NH3 molecule to form the Al3O3NH3- ion in mass spectrometric studies. This is in contrast to similarly performed studies with water, in which the Al3O5H4- product was highly favored. However, the anion PE spectrum of the ammoniated species is very similar to that of Al3O4H2-. The adiabatic electron affinity of Al3O3NH3 is determined to be 2.35(5) eV. Based on comparison between the spectra and calculated electron affinities, it appears that NH3 adds dissociatively to Al3O3-, suggesting that the time for the Al3O3-NH3 complex to either overcome or tunnel through the barrier to proton transfer (which is higher for NH3 than for water) is short relative to the time for collisional cooling in the experiment.

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Hydrogen-bonding interactions in peptide nucleic acid and deoxyribonucleic acid: a comparative study.

Peptide nucleic acid (PNA) is a synthetic analogue of deoxyribonucleic acid (DNA) capable of tightly binding to itself and DNA with high specificity. Using hybrid density functional methods, hydrogen-bond (H-bond) strengths have been evaluated for isolated Watson-Crick base pairs, PNA base pairs, and charged as well as neutral DNA base pairs. Heterogeneous base pairs of PNA with charged and neutral DNA have also been investigated. The competing effects of short-range H-bonding and long-range Coulombic repulsions in charged DNA base pairs have been analyzed. Polarizable continuum models have been employed to evaluate solvation effects on the binding energies.

Base Composition↗

Al-H bond formation in hydrated aluminum oxide cluster anions.

Quantum chemical calculations have been performed to investigate the interaction of a water molecule with gas phase aluminum oxide cluster anions. While oxygen-rich clusters (AlxOy-,x y) generate metal hydrides. These hydride species are, in many cases, 30-35 kcal/mol more stable than their hydroxide counterparts. Our observations on such competing reaction pathways may be useful to understand the catalytic role of alumina nanoparticles in many chemical reactions.

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Assessment of Gaussian-3 and density-functional theories on the G3/05 test set of experimental energies.

The G3/99 test set [L. A. Curtiss, K. Raghavachari, P. C. Redfern, and J. A. Pople, J. Chem. Phys. 112, 7374 (2000)] of thermochemical data for validation of quantum chemical methods is expanded to include 78 additional energies including 14 enthalpies of formation of the first- and second-row nonhydrogen molecules, 58 energies of molecules containing the third-row elements K, Ca, and Ga-Kr, and 6 hydrogen-bonded complexes. The criterion used for selecting the additional systems is the same as before, i.e., experimental uncertainties less than +/- 1 kcal/mol. This new set, referred to as the G3/05 test set, has a total of 454 energies. The G3 and G3X theories are found to have mean absolute deviations of 1.13 and 1.01 kcal/mol, respectively, when applied to the G3/05 test set. Both methods have larger errors for the nonhydrogen subset of 79 species for which they have mean absolute deviations of 2.10 and 1.64 kcal/mol, respectively. On all of the other types of energies the G3 and G3X methods are very reliable. The G3/05 test set is also used to assess density-functional methods including a series of new functionals. The most accurate functional for the G3/05 test set is B98 with a mean absolute deviation of 3.33 kcal/mol, compared to 4.14 kcal/mol for B3LYP. The latter functional has especially large errors for larger molecules with a mean absolute deviation of 9 kcal/mol for molecules having 28 or more valence electrons. For smaller molecules B3LYP does as well or better than B98 and the other functionals. It is found that many of the density-functional methods have significant errors for the larger molecules in the test set.

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Comparison of nickel-group metal cyanides and acetylides and their anions using anion photoelectron spectroscopy and density functional theory calculations.

The photoelectron spectra of NiCN-, PdCN-, PtCN-, HNiC2H-, Ni(C2H)2(-), PdC2H-, and PtC2H- are presented along with density functional theory calculations. Linear structures are predicted for all anions and neutrals. NiCN- and NiCN are predicted to have 3delta and 2delta ground states, respectively. HNiC2H- and Ni(C2H)2(-) are predicted to have 2delta and 2delta(g) anion and 3delta and 3pi(g) neutral ground states, respectively. The palladium and platinum cyanide and acetylides have 1sigma+ anion and 2sigma+ neutral ground states. Simulations generated from the calculated parameters are compared to observed spectra, and molecular orbital diagrams are presented to compare the bonding in these species.

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Probing occupied states of the molecular layer in Au-alkanedithiol-GaAs diodes.

Internal photoemission (IPE) studies were performed on molecular diodes in which the alkanedithiol [HS(CH(2))(n)SH, n = 8, 10] molecular layer is sandwiched between Au and GaAs electrodes. The results are compared to those from Au-GaAs Schottky diodes. An exponential energy dependence in the IPE yield was observed for the molecular diodes, in contrast to the quadratic energy dependence characteristic of metal-semiconductor Schottky diodes, indicating that Au is not the source of electrons in the IPE process in the molecular diodes. From the GaAs dopant density dependence, we also can rule out GaAs being the source of these electrons. Compared with the results of cluster electronic structure calculations, we suggest that IPE is probing the occupied levels of GaAs-molecular interfacial states.

Alkanes↗

Hafnium oxide and zirconium oxide atomic layer deposition: initial precursor and potential side-reaction product pathways with H/Si(100)-2 x 1.

Hybrid density functional calculations have been carried out using cluster models of the H/Si(100)-2 x 1 surface to investigate the mechanistic details of the initial surface reactions occurring in the atomic layer deposition of hafnium and zirconium oxides (HfO2 and ZrO2). Reaction pathways involving the metal precursors ZrCl4, Zr(CH3)4, HfCl4, and Hf(CH3)4 have been examined. Pathways leading to the formation of a Zr-Si or Hf-Si linkage show a significant sensitivity to the identity of the leaving group, with chloride loss reactions being both kinetically and thermodynamically less favorable than reactions leading to the loss of a methyl group. The energetics of the Zr(CH3)4 and Hf(CH3)4 reactions are similar with an overall exothermicity of 0.3-0.4 eV and a classical barrier height of 1.1-1.2 eV. For the reaction between H2O and the H/Si(100)-2 x 1 surface, the activation energy and overall reaction enthalpy are 1.6 and -0.8 eV, respectively. Due to contamination, trace amounts of H2O may be encountered by metal precursors, leading to the formation of minor species that can lead to unanticipated side-reaction pathways. Such gas-phase reactions between the halogenated and alkylated metal precursors and H2O are exothermic with small or no reaction barriers, allowing for the possibility of metal precursor hydroxylation before the H/Si surface is encountered. Of the contaminant surface reaction pathways, the most kinetically favorable corresponds to the surface -OH deposition. Interestingly, for the hydroxylated metal precursors, a unique reaction pathway resulting in the direct formation of Si-O-Zr and Si-O-Hf linkages has been identified and found to be the most thermodynamically stable pathway available, being exothermic by approximately 1.0 eV.

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Structures of Mo2Oy- and Mo2Oy (y=2, 3, and 4) studied by anion photoelectron spectroscopy and density functional theory calculations.

The competitive structural isomers of the Mo(2)O(y) (-)Mo(2)O(y) (y=2, 3, and 4) clusters are investigated using a combination of anion photoelectron (PE) spectroscopy and density functional theory calculations. The PE spectrum and calculations for MoO(3) (-)MoO(3) are also presented to show the level of agreement to be expected between the spectra and calculations. For MoO(3) (-) and MoO(3), the calculations predict symmetric C(3v) structures, an adiabatic electron affinity of 3.34 eV, which is above the observed value 3.17(2) eV. However, there is good agreement between observed and calculated vibrational frequencies and band profiles. The PE spectra of Mo(2)O(2) (-) and Mo(2)O(3) (-) are broad and congested, with partially resolved vibrational structure on the lowest energy bands observed in the spectra. The electron affinities (EA(a)s) of the corresponding clusters are 2.24(2) and 2.33(7) eV, respectively. Based on the calculations, the most stable structure of Mo(2)O(2) (-) is Y shaped, with the two Mo atoms directly bonded. Assignment of the Mo(2)O(3) (-) spectrum is less definitive, but a O-Mo-O-Mo-O structure is more consistent with overall electronic structure observed in the spectrum. The PE spectrum of Mo(2)O(4) (-) shows cleanly resolved vibrational structure and electronic bands, and the EA of the corresponding Mo(2)O(4) is determined to be 2.13(4) eV. The structure most consistent with the observed spectrum has two oxygen bridge bonds between the Mo atoms.

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Addition of water to Al5O4- determined by anion photoelectron spectroscopy and quantum chemical calculations.

The anion photoelectron spectra of Al5O4- and Al5O5H2- are presented and interpreted within the context of quantum chemical calculations on these species. Experimentally, the electron affinities of these two molecules are determined to be 3.50(5) eV and 3.10(10) eV for the bare and hydrated cluster, respectively. The spectra show at least three electronic transitions crowded into a 1 eV energy window. Calculations on Al5O4- predict a highly symmetric near-planar structure with a singlet ground state. The neutral structure calculated to be most structurally similar to the ground state structure of the anion is predicted to lie 0.15 eV above the ground state structure of the neutral. The lowest energy neutral isomer does not have significant Franck-Condon overlap with the ground state of the anion. Dissociative addition of water to Al5O4- is energetically favored over physisorption. The ground state structure for the Al5O4- +H(2)O product forms when water adds to the central Al atom in Al5O4- with -H migration to one of the neighboring O atoms. Again, the ground state structures for the anion and neutral are very different, and the PE spectrum represents transitions to a higher-lying neutral structure from the ground state anion structure.

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Carbon nanotube inner phase chemistry: the Cl- exchange SN2 reaction.

Density functional calculations have been carried out to investigate the nature of the inner phase of a (6,6) carbon nanotube, using the Cl(-) exchange S(N)2 reaction as an indicator. Inside the carbon nanotube the classical barrier height increases by 6.6 kcal/mol due to the nanotube polarizability. This suggests that the inner phase environment can be considered a form of solid solvation, offering the possibility of obtaining altered guest properties and reactivity through dielectric stabilization.

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