Biomedical subjects

Kurt V Mikkelsen

Publications and source records attributed to Kurt V Mikkelsen.

13 recordsLinked to original sources

PubMed2006

Two-photon absorption cross sections: an investigation of solvent effects. Theoretical studies on formaldehyde and water.

The effects of a solvent on the two-photon absorption of microsolvated formaldehyde and liquid water have been studied using hybrid coupled-cluster/molecular mechanics (CC/MM) response theory. Both water and formaldehyde were considered solvated in water, where the solvent water molecules were described within the framework of molecular mechanics. Prior to the CC/MM calculations, molecular dynamics simulations were performed on the water/formaldehyde and water/water aggregates and many configurations were generated. By carrying out CC/MM response calculations on the individual configurations, it was possible to obtain statistically averaged results for both the excitation energies and two-photon absorption cross sections. For liquid water, the comparison between one- and two-photon absorption spectra is in good agreement with the experimental data available in the literature. In particular, the lowest energy transition occurring in the one-photon absorption spectrum of water only occurs with a relatively small strength in the two-photon absorption spectrum. This result is important for the interpretation of two-photon absorption data as these results show that in the absence of selection rules that determine which transitions are forbidden, the spectral profile of the two-photon absorption spectrum can be significantly different from the spectral profile of the one-photon absorption spectrum.

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PubMed2006

Hydrogen bonding effects on infrared and Raman spectra of drug molecules.

Infrared and Raman spectra of three drug molecules, aspirin, caffeine and ibuprofen, in gas phase and in aqueous solution have been simulated using hybrid density functional theory. The long range solvent effect is modelled by the polarizable continuum model, while the short range hydrogen bonding effects are taken care of by the super-molecular approach with explicit inclusion of water molecules. The calculated spectra are found to compare well with available experimental results. The agreement obtained make grounds for proposing theoretical modeling as a tool for characterizing changes in the bonding environments of drug molecules in terms of particular variations in their IR and Raman spectra.

Aspirin↗

PubMed2006

Statistical mechanically averaged molecular properties of liquid water calculated using the combined coupled cluster/molecular dynamics method.

Liquid water is investigated theoretically using combined molecular dynamics (MD) simulations and accurate electronic structure methods. The statistical mechanically averaged molecular properties of liquid water are calculated using the combined coupled cluster/molecular mechanics (CC/MM) method for a large number of configurations generated from MD simulations. The method includes electron correlation effects at the coupled cluster singles and doubles level and the use of a large correlation consistent basis set. A polarizable force field has been used for the molecular dynamics part in both the CC/MM method and in the MD simulation. We describe how the methodology can be optimized with respect to computational costs while maintaining the quality of the results. Using the optimized method we study the energetic properties including the heat of vaporization and electronic excitation energies as well as electric dipole and quadrupole moments, the frequency dependent electric (dipole) polarizability, and electric-field-induced second harmonic generation first and second hyperpolarizabilities. Comparisons with experiments are performed where reliable data are available. Furthermore, we discuss the important issue on how to compare the calculated microscopic nonlocal properties to the experimental macroscopic measurements.

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PubMed2006

Coupled cluster and density functional theory studies of the vibrational contribution to the optical rotation of (S)-propylene oxide.

In a previous study (Chemical Physics Letters 2005, 401 , 385) we computed the optical rotatory dispersion of (S)-propylene oxide in gas phase and solution using the hierarchy of coupled cluster models CCS, CC2, CCSD, and CC3. Even for the highly correlated CC3 model combined with a flexible basis set, the theoretical gas-phase specific rotation at 355 nm was found to be negative in contrast to the experimental result. We argued that vibrational contributions could be crucial for obtaining a complete understanding of the experimental result. Here, we show that this indeed is the case by using coupled cluster models and density functional theory methods to calculate the vibrational contributions to the gas-phase specific rotation at 355, 589.3, and 633 nm. While density functional theory (B3LYP and SAOP functionals) overestimates the specific rotation at 355 nm by approximately 1 order of magnitude and yields an incorrect sign at 589.3 and 633 nm, the coupled cluster results are in excellent agreement with the experimentally measured optical rotations. We find that all vibrational modes contribute significantly to the optical rotation and that temperature effects must be taken into account.

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PubMed2006

Uptake of phenol on aerosol particles.

We present a study of the interaction between a phenol molecule and an aerosol particle. The aerosol particle is represented by a cluster of 128 water molecules. Using a classical approach, we present interaction energy surfaces for different relative distances and for three orientations of phenol relative to the particle. From the energy surfaces we find the reaction pathways with the largest interaction between the molecule and the particle. We use a quantum mechanics/molecular mechanics (QM/MM) method to calculate a potential energy curve for each reaction path. Coupled cluster methods are used for the part of the system described by quantum mechanics, while the part described by molecular mechanics is represented by a polarizable force field. We compare results obtained from the classical approach with the QM/MM results. Furthermore, we use the QM/MM results to calculate mass accommodation coefficients using a quantum-statistical (QM-ST) model and show how the mass accommodation coefficient depends on the relative orientation of phenol with respect to the aerosol particle.

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PubMed2006

Correlated electronic structure nonlinear response methods for structured environments.

This contribution concerns a brief outline of structural environment models where correlated electronic structure response methods are utilized for the determination of nonlinear optical properties of molecules. The presentation provides theory and applications of a heterogeneous dielectric media model and a quantum mechanical-classical mechanical model at the level of correlated electronic structure response methods. The correlated electronic structure response methods include the multiconfigurational self-consistent field method.

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PubMed2005

Coupled cluster calculation of the n --> pi* electronic transition of acetone in aqueous solution.

The combined linear response coupled cluster/molecular mechanics (CC/MM) scheme including mutual polarization effects in the coupling Hamiltonian is applied together with supermolecular CC methods to the study of the gas-to-aqueous solution blue shift of the n --> pi* excitation energy in acetone. The aug-cc-pVDZ basis set is found to be adequate for the calculation of this excitation energy. In the condensed phase, the shift in the excitation energy is obtained by statistical averaging over 800 solute-solvent configurations extracted from a molecular dynamics simulation. We find the shift to be around 1100-1200 cm(-1) depending on the specific model used to describe solvent polarization. The importance of including explicit polarization in both the molecular dynamics simulation as well as the CC/MM calculations is emphasized. Furthermore, the significant dependence of the excitation energy on the CO bond length of acetone is discussed.

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PubMed2005

2,6,10-Tris(dialkylamino)trioxatriangulenium salts: a new promising fluorophore. Ion-pair formation and aggregation in non-polar solvents.

The D3h symmetric tris(dialkylamino)trioxatriangulenium ((R2N)3TOTA+) ions are structurally related to classical stains and fluorophores such as triphenylmethane dyes and rhodamines. New derivatives of (R2N)3TOTA+, in which long flexible alkyl chains surround the planar and rigid aromatic core, have been synthesized and isolated as hexafluorophosphate salts. In contrast to short-chain derivatives of triphenylmethane dyes, the new compounds described here are soluble in hydrocarbon solvents. The photophysical properties of these carbenium salts are investigated. Characteristic alterations of the photophysical properties as a function of solvent polarity, concentration and temperature are observed. A model to rationalize the phenomena is presented comprising three states of aggregation, i.e. freely solvated ions, tight ion-pairs, and dimers of ion-pairs. Reduced symmetry in the tight ion-pairs is held responsible for the observed splitting of the long wavelength absorption band. Exciton coupling in the ion-pair dimers leads to reduced oscillator strength of the S0-S1 transition. The model is supported by semi-empirical calculations of the structures and electronic transitions of the free cation and its ion-pair(s).

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PubMed2005

Two-photon photosensitized production of singlet oxygen: sensitizers with phenylene-ethynylene-based chromophores.

[reaction: see text] Singlet molecular oxygen (a(1)Delta(g)) has been produced and optically monitored in time-resolved experiments upon nonlinear two-photon excitation of photosensitizers that contain triple bonds as an integral part of the chromophore. Both experiments and ab initio computations indicate that the photophysical properties of alkyne-containing sensitizers are similar to those in the alkene-containing analogues. Most importantly, however, in comparison to the analogue that contains double bonds, the sensitizer containing alkyne moieties is more stable against singlet-oxygen-mediated photooxygenation reactions. This increased stability can be advantageous, particularly with respect to two-photon singlet oxygen imaging experiments in which data are collected over comparatively long time periods.

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PubMed2005

Refractive index of liquid water in different solvent models.

We present a combined molecular dynamics/quantum chemical perturbation method for calculating the refractive index of liquid water at different temperatures. We compare results of this method with the refractive index obtained from other solvent models. The best agreement with the experimental refractive index of liquid water and its temperature dependence is obtained using correlated gas-phase polarizabilities in the classical Lorentz-Lorenz expression. Also, the iterative self-consistent reaction field approach in the semicontinuum implementation matches the experimental refractive index reasonably well.

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PubMed2005

Two-photon photosensitized production of singlet oxygen in water.

Singlet molecular oxygen (a(1)Delta(g)) has been produced and optically detected in time-resolved experiments upon nonlinear two-photon excitation of a photosensitizer dissolved in water. For a given sensitizer, specific functional groups that impart water solubility and that give rise to larger two-photon absorption cross sections are, in many cases, not conducive to the production of singlet oxygen in high yield. This issue involves the competing influence of intramolecular charge transfer that can be pronounced in aqueous systems; more charge transfer in the chromophore facilitates two-photon absorption but decreases the singlet oxygen yield. This phenomenon is examined in a series of porphyrins and vinyl benzenes.

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PubMed2004

Solvent effects on the n-->pi* electronic transition in formaldehyde: a combined coupled cluster/molecular dynamics study.

We present a study of the blueshift of the n-->pi* electronic transition in formaldehyde in aqueous solution using a combined coupled cluster/molecular mechanics model including mutual polarization effects in the Hamiltonian. In addition, we report ground and excited state dipole moments. Configurations are generated from molecular dynamics simulations with two different force fields, one with and one without an explicit polarization contribution. A statistical analysis using 1200 configurations is presented. Effects of explicit polarization contributions are found to be significant. It is found that the main difference in the effects on the excitation energies arises from the fact that the two force fields result in different liquid structures, and thus a different set of configurations is generated for the coupled cluster/molecular mechanics calculations.

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PubMed2004

Second harmonic generation second hyperpolarizability of water calculated using the combined coupled cluster dielectric continuum or different molecular mechanics methods.

In this article we report the first calculations of second harmonic generation second hyperpolarizability of liquid water using coupled cluster/molecular mechanics (CC/MM) methods or coupled cluster/dielectric continuum (CC/DC) methods. The latter approach treats the solvent as an isotropic homogeneous fluid while the former accounts for the discrete nature of the solvent molecules. The CC/MM approach may include or exclude polarization effects explicitly. Alternatively, polarization effects may be included using perturbation theory. The CC descriptions implemented are the coupled cluster second-order approximate singles and doubles (CC2) and coupled cluster singles and doubles models. The second harmonic generation second hyperpolarizabilities are, depending on the model, obtained using either an analytical implementation of the cubic response function or using an analytical implementation of the quadratic response function combined with the finite field technique. The CC/MM results for the second harmonic generation second hyperpolarizability compare excellently with experimental data while a significant overestimation is found when using the CC/DC model. Particular, the cavity radius in the CC/DC calculations have an enormous effects on this fourth-order property.

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