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L R Snyder

Publications and source records attributed to L R Snyder.

At least 19 recordsLinked to original sources
PubMed1992

Computer simulation as a tool for the rapid optimization of the high-performance liquid chromatographic separation of a tryptic digest of human growth hormone.

Computer simulation was used to optimize the separation of a tryptic digest of recombinant human growth hormone using reversed-phase high-performance liquid chromatography in a gradient mode. DryLab G/plus software modelled the retention behavior of the complex tryptic digest mixture as a function of gradient conditions, based on data from two experimental gradient runs. The theoretical optimum separation conditions were rapidly obtained and reproduced experimentally. Resolution did not simply increase as gradient steepness was decreased, rather, an intermediate gradient time provided maximum sample resolution. The simulation results also indicate that the method is reasonably rugged, with little change in the separation expected for different high-performance liquid chromatography systems, and changes in the separation can be compensated by a change in the gradient steepness. Computer simulation can also be useful to quickly reoptimize conditions for a new column, if it fails to provide the same separation.

Chromatography, High Pressure Liquid↗
PubMed1992

Computer simulation for the prediction of separation as a function of pH for reversed-phase high-performance liquid chromatography. I. Accuracy of a theory-based model.

Computer simulation software (DryLab I/mp) is described for predicting high-performance liquid chromatographic separation as a function of changes in mobile phase pH. Three experimental runs with pH (only) varied are used to derive values of pKa plus capacity factors (k') for the ionized and non-ionized form of each ionizable solute. Various tests of the experimental data then allow classification of each solute as acidic, basic, neutral (including strong or weak acids or bases) and amphoteric. Experimental data are reported for the separation of several substituted anilines as a function of pH and solvent composition (%B). Experimental requirements for the accurate prediction of separation (ca. +/- 2-4% in alpha) as a function of pH are discussed. The reliability of the software is demonstrated for three different samples: mixtures of (a) substituted benzoic acids, (b) substituted anilines and (c) catecholamine-related compounds.

Aniline Compounds↗
PubMed1992

Computer simulation for the prediction of separation as a function of pH for reversed-phase high-performance liquid chromatography. II. Resolution as a function of simultaneous change in pH and solvent strength.

The optimization of reversed-phase high-performance liquid chromatographic separation by the simultaneous variation of pH and solvent strength (%B) was studied for acidic (substituted benzoic acids) and basic samples (substituted anilines). The combination of these two variables was expected to be more useful than either variable alone. This proved to be the case for the benzoic acid sample, but not for the aniline sample. Column plate numbers were also studied for each sample and as a function of pH. With the exception of one compound (3,5-dimethylaniline) in one particular pH range (3.0-4.5), plate numbers of 12,000-20,000 were observed for each sample.

Aniline Compounds↗
PubMed1991

The use of a computer to select optimized conditions for high-performance liquid chromatography separation.

Computer simulation allows the convenient prediction and optimization of HPLC separation as a function of various separation conditions. The use of retention and bandwidth relationships that have been validated for a broad range of chromatographic systems minimizes the number of experimental runs needed, especially for the new technique of restricted multi-parameter optimization. The chromatographer is free to use these procedures in a trial-and-error mode, or alternatively use can be made of resolution maps and other data summaries. "Gridding" experiments, based on the automated collection of chromatographic data, can be used to supplement predictions obtained from computer simulation.

Chemistry Techniques, Analytical↗
PubMed1990

Computer simulation (based on a linear-elution-strength approximation) as an aid for optimizing separations by programmed-temperature gas chromatography.

If the dependence of retention on temperature is specified for the various components of a sample in isothermal gas chromatography (GC), it is possible to predict retention, bandwidth, and resolution for programmed-temperature GC separations as a function of experimental conditions. The use of a linear-elution-strength (LES) approximation for isothermal retention allows these predictions to be carried out more easily and conveniently, in turn facilitating rapid simulations with a personal computer. This approach to GC method development appears promising, especially if segmented-temperature programs are used. The LES approximation also provides added insight into how different factors affect separation in programmed-temperature GC.

Chromatography, Gas↗
PubMed1988

Preparative separation of peptide and protein samples by high-performance liquid chromatography with gradient elution. I. The Craig model as a basis for computer simulations.

The Craig model (assuming a Langmuir isotherm) has been used by us previously to successfully simulate isocratic high-performance liquid chromatographic (HPLC) separation in a mass-overload mode. Here we have extended this approach to the case of gradient elution for large samples. These simulations support our earlier conclusion that so-called "corresponding" isocratic and gradient separations provide similar sample resolution when the sample size is the same. "Corresponding" separations refer to the case where isocratic retention k' is equal to average gradient retention k, and where other conditions (column, flow-rate, etc.) are the same. Craig simulations reported here also provide further insight into the factors that affect preparative HPLC separations under mass-overload conditions.

Chromatography, High Pressure Liquid↗
PubMed1988

Preparative separation of peptide and protein samples by high-performance liquid chromatography with gradient elution. II. Experimental examples compared with theory.

Craig simulations of mass-overloaded gradient elution reported in the preceding paper have been extended to the case of non-Langmuir isotherms. Isotherms were selected that appear to be characteristic of peptide and protein samples in reversed-phase high-performance liquid chromatography. The dependence of bandwidth on sample size and gradient conditions was examined by Craig simulation and compared with experimental data for 13 different experimental systems involving four different proteins. There is a good correspondence between simulations and experimental data, and it seems possible to quantitatively predict bandwidth and resolution as a function of small-sample retention data, experimental conditions, and sample size. A systematic approach for designing the preparative or process-scale separation of protein mixtures by reversed-phase gradient elution is proposed.

Chemical Phenomena↗
PubMed1988

Separation of proteins by reversed-phase high-performance liquid chromatography. I. Optimizing the column.

In the process of developing a new analytical technology (the chromatophoresis process) which couples reversed-phase high-performance liquid chromatography (HPLC) to sodium dodecyl sulfate polyacrylamide gel electrophoresis in a real-time automated system, it was apparent that improvements in resolving power for the first-dimension (HPLC) separation were necessary. The present paper describes the optimization of the column for our initial work on reversed-phase HPLC separations. Polymeric (polystyrene) packings having particle diameters of 5 micron and pore diameters of 300 A were generally superior in terms of resolution, sample recovery and minimization of "ghosting". Optimum column dimensions were 50 x 1.0 mm I.D. for the flow-rates required in our system (10-100 microliter/min).

Chromatography, High Pressure Liquid↗
PubMed1988

Separation of proteins by reversed-phase high-performance liquid chromatography. II. Optimizing sample pretreatment and mobile phase conditions.

The effects of separation variables such as temperature, pH and composition of the mobile phase (including additives such as chaotropes, ion-pairing agents and surfactants), sample size and sample pretreatment for reversed-phase high-performance liquid chromatography (RP-HPLC) of proteins is examined. Experimental optimization of these parameters using the preferred instrumental and column conditions described previously lead to well behaved chromatographic performance for most proteins. This allowed us to achieve the required level of performance for the first dimension (RP-HPLC) separation of most protein samples by the chromatophoresis process.

Bacterial Proteins↗
PubMed1987

Predicting bandwidth in the high-performance liquid chromatographic separation of large biomolecules. I. Size-exclusion studies and the role of solute stokes diameter versus particle pore diameter.

Column plate numbers, N, were measured for 12 different proteins as a function of mobile phase flow-rate in two gel filtration systems (either denaturing or non-denaturing conditions). These data were used to extend a previous model that predicts bandwidths in reversed-phase and ion-exchange chromatography. Restriction of diffusion of large molecules within column packing pores is now defined more precisely, with a single relationship describing this effect for both reversed-phase and size-exclusion chromatography (SEC) (and presumably other high-performance liquid chromatography systems). Separations by gel filtration (SEC) are now included in our general model. A total of 17 flow-rate studies were carried out, involving different proteins, columns and/or mobile phase conditions (denaturing or non-denaturing). Comparisons of plate numbers predicted by the model with experimental values were satisfactory in 15 out of 17 cases. The remaining two cases appear to represent "non-well-behaved" systems, where experimental bandwidths were higher than predicted values by more than 20%. Initial attempts at understanding the origin of these non-ideal effects are described.

Animals↗
PubMed1987

Predicting bandwidth in the high-performance liquid chromatographic separation of large biomolecules. II. A general model for the four common high-performance liquid chromatography methods.

A general model for describing gradient elution separations of peptides and proteins by reversed-phase high-performance liquid chromatography (HPLC) has been presented previously. This model has now been modified so that it can be applied to any of the four HPLC methods used for separating biological macromolecules: reversed-phase, ion-exchange, hydrophobic-interaction and size-exclusion chromatography, carried out in either an isocratic or gradient elution mode. The role of sample molecule structure and the particular column used has been further studied, so that previous empirical parameters for different column/sample choices can now be estimated from three physical properties of the sample and the column: sample molecular weight, native vs. denatured sample, column packing pore diameter. This eliminates much of the empiricism of our preceding model, and minimizes the number of experimental runs now required in order to apply the model in practice. The final model has been tested for several hundred runs involving peptides and proteins in the molecular weight range 600-162,000, all four of these HPLC methods, in both isocratic and gradient elution modes, and using data from several different laboratories (including our own). The model is able to predict bandwidth in HPLC separations of proteins and peptides with an accuracy of +/- 17% (1 standard deviation), for the case of "well-behaved" separations. Separations that are not "well-behaved" will give wider bands than predicted by the model.

Chemical Phenomena↗
PubMed1987

The molecular organization of the beta-globin complex of the deer mouse, Peromyscus maniculatus.

Recombinant DNA clones have been isolated that contain 80 kb of the beta-globin complex from the deer mouse, Peromyscus maniculatus. Comparisons of this complex with that from the laboratory mouse, Mus domesticus (with an order 5'-Hbby, Hbb-bhO, Hbb-bhl, Hbb-bh2, Hbb-bh3, Hbb-bl, Hbb-b2 3') highlight organizational trends in the beta-globin complex since the two species diverged. Unlike other mammals studied thus far, the deer mouse possesses three adult genes. Partial sequence analysis indicates that each of the three adult genes is intact and hence may be functional. Hybridization of one of the two Mus pseudogenes, Hbb-bh3, to genomic blots from Peromyscus reveals that it has a homologous counterpart in Peromyscus. Homologous genes to the two gamma-like Mus genes, Hbb-bhO and Hbb-bhl, are also found in Peromyscus. The strong hybridization between the Hbb-bhl genes and significant nucleotide similarity between the Hbb-bhO genes suggest that both pairs are important for the ontogeny of these mice although no known product has been identified for the Hbb-bhO genes. The presence of Hbb-bhO and Hbb-bhl in Peromyscus suggests that the duplication that created this related gene set occurred before the two lineages diverged. A single gene for Hbb-y has been isolated from Peromyscus. The adult region in Peromyscus has undergone significant divergence from the same region in Mus, having three rather than two adult genes, the acquisition of at least 15 kb of extra DNA relative to Mus, and possibly the loss of the Hbb-bh2 pseudogene. The nonadult region of the complex, in contrast, contains the same set of genes apparently distributed over the same amount of DNA as in the Mus beta-globin complex. This observation suggests that the embryonic region of the complex is more evolutionarily stable than the adult region.

Animals↗
PubMed1986

Model of protein conformation in the reversed-phase separation of interleukin-2 muteins.

Thirty muteins* of interleukin-2 were studied by reversed-phase high-performance liquid chromatography in a gradient mode. Values of the stoichiometry-factor Z [from Geng and Regnier, J. Chromatogr., 296 (1984) 15] varied over a 2.5-fold range for these proteins of similar molecular weight and composition. It is proposed that the more hydrophobic and/or more stable proteins have smaller values of Z while the larger Z-values correspond to a higher degree of protein unfolding during reversed-phase retention. The practical utility of this approach was demonstrated when these Z values were used to predict correctly a reversal in elution order for two closely related interleukin-2 muteins, when shallower gradients were used.

Amino Acids↗
PubMed1985

Comparison of reversed-phase columns for the separation of tryptic peptides by gradient elution. Correlation of experimental results and model prediction.

A total of 10 reversed-phase columns obtained from different suppliers were evaluated for their ability to separate typical peptide mixtures: tryptic digests of cytochrome c, lysozyme and collagen. Each column was tested in a standard gradient elution using phosphate buffer (pH 2.85) as the A-solvent and acetonitrile as the B-solvent. Some differences in band spacing for the various peptides were observed from column to column. More important differences were observed in the ability of these various columns to provide narrow peaks and good resolution, as measured by column peak capacity. These differences in column peak capacity were related to differences in column dimensions and particle size; it also appeared that C8 bonded phases were somewhat more efficient than were C18 phases. The recovery of cytochrome c digest from four of the columns was also assessed. Summed peak areas were proportional to sample size, as the latter was varied from 1 to 100 micrograms. The apparent recovery from each column did not vary by more than +/- 5%. From this it was concluded that these columns gave essentially quantitative recovery for this particular sample. Limited data on column life were obtained for some of these columns.

Animals↗
PubMed1985

Low P50 in deer mice native to high altitude.

Whereas it is widely believed that animals native to high altitude show lower O2 partial pressures at 50% hemoglobin saturation (P50) than do related animals native to low altitude, that "fact" has not been well documented. Consequently, P50 at pH 7.4, PCO2(7.4), the CO2 Bohr effect, and the buffer slope (delta log PCO2/delta pH) were determined via the mixing technique in Peromyscus maniculatus native to a range of altitudes but acclimated to 340 or 3,800 m. PCO2(7.4) and buffer slope were substantially lower at high altitude. The change in P50(7.4) between acclimation altitudes was minimal (0.8% increase at 3,800 m), because of counterbalancing changes in PCO2, 2,3-diphospho-D-glycerate concentration, and perhaps other factors. At both acclimation altitudes there was a highly significant negative correlation between P50(7.4) and native altitude. Since pH in vivo probably increases slightly at high altitude, the data on P50 corrected to pH 7.4 are probably underestimates of the difference in in vivo P50 at low vs. high altitude. Hence these results corroborate theoretical predictions that low P50 is advantageous under severe hypoxic stress.

Acclimatization↗
PubMed1984

Automated analysis of antiepileptic drugs in serum by column-switching high-performance liquid chromatography.

An automated high-performance liquid chromatographic column-switching system is presented for the analysis of antiepileptic drugs in serum. Initial results show that a reversed-phase extraction column works best overall when fitted with screens versus frits, and when packed with porous 30-micron particles as opposed to a pellicular packing of similar size or with smaller porous particles. The continuous analysis of primidone for over 2000 serum samples is achieved at a rate of twelve samples per hour with a single analytical column. An analogous boxcar high-performance liquid chromatographic system is also assembled and used to analyze two of four injected antiepileptic drugs at a rate of 40 samples per hour. For 1000 of these analyses, the coefficient of variation is 1% without an internal standard.

Anticonvulsants↗