Biomedical subjects

M D Fayer

Publications and source records attributed to M D Fayer.

36 records · Page 2Linked to original sources

PubMed2005

Boson peak in supercooled liquids: time domain observations and mode coupling theory.

Optical heterodyne-detected optical Kerr effect (OHD-OKE) experiments are presented for the supercooled liquid acetylsalicylic acid (aspirin - ASP). The ASP data and previously published OHD-OKE data on supercooled dibutylphthalate (DBP) display highly damped oscillations with a periods of approximately 2 ps as the temperature is reduced to and below the mode coupling theory (MCT) temperature T(C). The oscillations become more pronounced below T(C). The oscillations can be interpreted as the time domain signature of the boson peak. Recently a schematic MCT model, the Sjogren model, was used to describe the OHD-OKE data for a number of supercooled liquids by Gotze and Sperl [W. Gotze and M. Sperl, Phys. Rev. E 92, 105701 (2004)] , but the short-time and low-temperature behaviors were not addressed. Franosch et al. [T. Franosch, W. Gotze, M. R. Mayr, and A. P. Singh, Phys. Rev. E 55, 3183 (1997)] found that the Sjogren model could describe the boson peak observed by depolarized light-scattering (DLS) experiments on glycerol. The OHD-OKE experiment measures a susceptibility that is a time domain equivalent of the spectrum measured in DLS. Here we present a detailed analysis of the ASP and DBP data over a broad range of times and temperatures using the Sjogren model. The MCT schematic model is able to describe the data very well at all temperatures and relevant time scales. The trajectory of MCT parameters that fit the high-temperature data (no short-time oscillations) when continued below T(C) results in calculations that reproduce the oscillations seen in the data. The results indicate that increasing translational-rotational coupling is responsible for the appearance of the boson peak as the temperature approaches and drops below T(C).

Journal Article↗

PubMed2005

Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time.

In general, the formation and dissociation of solute-solvent complexes have been too rapid to measure without disturbing the thermal equilibrium. We were able to do so with the use of two-dimensional infrared vibrational echo spectroscopy, an ultrafast vibrational analog of two-dimensional nuclear magnetic resonance spectroscopy. The equilibrium dynamics of phenol complexation to benzene in a benzene-carbon tetrachloride solvent mixture were measured in real time by the appearance of off-diagonal peaks in the two-dimensional vibrational echo spectrum of the phenol hydroxyl stretch. The dissociation time constant tau(d) for the phenol-benzene complex was 8 picoseconds. Adding two electron-donating methyl groups to the benzene nearly tripled the value of tau(d) and stabilized the complex, whereas bromobenzene, with an electron-withdrawing bromo group, formed a slightly weaker complex with a slightly lower tau(d). The spectroscopic method holds promise for studying a wide variety of other fast chemical exchange processes.

Journal Article↗

PubMed2005

Orientational dynamics of water confined on a nanometer length scale in reverse micelles.

The time-resolved orientational anisotropies of the OD hydroxyl stretch of dilute HOD in H(2)O confined on a nanometer length scale in sodium bis(2-ethylhexyl) sulfosuccinate (AOT) reverse micelles are studied using ultrafast infrared polarization and spectrally resolved pump-probe spectroscopy, and the results are compared to the same experiments on bulk water. The orientational anisotropy data for three water nanopool sizes (4.0, 2.4, and 1.7 nm) can be fitted well with biexponential decays. The biexponential decays are analyzed using a wobbling-in-a-cone model that involves fast orientational diffusion within a cone followed by slower, full orientational relaxation. The data provide the cone angles, the diffusion constants for motion within the cones, and the final diffusion constants as a function of the nanopool size. The two processes can be interpreted as a local angular fluctuation of the OD and a global hydrogen bond network rearrangement process. The trend in the relative amplitudes of the long and short exponential decays suggest an increasing rigidity as the nanopool size decreases. The trend in the long decay constants indicates a longer hydrogen bond network rearrangement time with decreasing reverse micelle size. The anisotropy measurements for the reverse micelles studied extrapolate to approximately 0.33 rather than the ideal value of 0.4, suggesting the presence of an initial inertial component in the anisotropy decay that is too fast to resolve. The very fast decay component is consistent with initial inertial orientational motion that is seen in published molecular-dynamics simulations of water in AOT reverse micelles. The angle over which the inertial orientational motion occurs is determined. The results are in semiquantitative agreement with the molecular-dynamics simulations.

Colloids↗

PubMed2005

Ultrafast to slow orientational dynamics of a homeotropically aligned nematic liquid crystal.

The orientational dynamics of a homeotropically aligned nematic liquid crystal, 4'-pentyl-4-biphenylcarbonitrile (5-CB), is studied over more than six decades of time (500 fs to 2 mus) using optical heterodyne detected optical Kerr effect experiments. In contrast to the dynamics of nematogens in the isotropic phase, the data do not decay as a highly temperature-dependent exponential on the longest time scale, but rather, a temperature-independent power law spanning more than two decades of time, the final power law, is observed. On short time scales (approximately 3 ps to approximately 1 ns) another power law, the intermediate power law, is observed that is temperature dependent. The power law exponent of the correlation function associated with the intermediate power law displays a linear dependence on the change in the nematic order parameter with temperature. Between the intermediate power law and the final power law, there is a crossover region that displays an inflection point. The temperature-dependent orientational dynamics in the nematic phase are shown to be very different than those observed in the isotropic phase.

Journal Article↗

PubMed2005

Dynamics of water confined on a nanometer length scale in reverse micelles: ultrafast infrared vibrational echo spectroscopy.

The dynamics of water, confined on a nanometer length scale (1.7 to 4.0 nm) in sodium bis-(2-ethylhexyl) sulfosuccinate reverse micelles, is directly investigated using frequency resolved infrared vibrational echo experiments. The data are compared to bulk water and salt solution data. The experimentally determined frequency-frequency correlation functions show that the confined water dynamics is substantially slower than bulk water dynamics and is size dependent. The fastest dynamics (approximately 50 fs) is more similar to bulk water, while the slowest time scale dynamics is much slower than water, and, in analogy to bulk water, reflects the making and breaking of hydrogen bonds.

Dioctyl Sulfosuccinic Acid↗

PubMed2004

Dynamics of water probed with vibrational echo correlation spectroscopy.

Vibrational echo correlation spectroscopy experiments on the OD stretch of dilute HOD in H(2)O are used to probe the structural dynamics of water. A method is demonstrated for combining correlation spectra taken with different infrared pulse bandwidths (pulse durations), making it possible to use data collected from many experiments in which the laser pulse properties are not identical. Accurate measurements of the OD stretch anharmonicity (162 cm(-1)) are presented and used in the data analysis. In addition, the recent accurate determination of the OD vibrational lifetime (1.45 ps) and the time scale for the production of vibrational relaxation induced broken hydrogen bond "photoproducts" ( approximately 2 ps) aid in the data analysis. The data are analyzed using time dependent diagrammatic perturbation theory to obtain the frequency time correlation function (FTCF). The results are an improved FTCF compared to that obtained previously with vibrational echo correlation spectroscopy. The experimental data and the experimentally determined FTCF are compared to calculations that employ a polarizable water model (SPC-FQ) to calculate the FTCF. The SPC-FQ derived FTCF is much closer to the experimental results than previously tested nonpolarizable water models which are also presented for comparison.

Deuterium↗

PubMed2004

Dynamics of hemoglobin in human erythrocytes and in solution: influence of viscosity studied by ultrafast vibrational echo experiments.

Ultrafast spectrally resolved stimulated vibrational echo experiments are used to measure the vibrational dephasing of the CO stretching mode of hemoglobin-CO (HbCO) inside living human erythrocytes (red blood cells), in liquid solutions, and in a glassy matrix. A method is presented to overcome the adverse impact on the vibrational echo signal from the strong light scattering caused by the cells. The results from the cytoplasmic HbCO are compared to experiments on aqueous HbCO samples prepared in different buffers, solutions containing low and high concentrations of glycerol, and in a solid trehalose matrix. Measurements are also presented that provide an accurate determination of the viscosity at the very high Hb concentration that is found inside the cells. It is demonstrated that the dynamics of the protein, as sensed by the CO ligand, are the same inside the erythrocytes and in aqueous solution and are independent of the viscosity. In solutions that are predominantly glycerol, the dynamics are modified somewhat but are still independent of viscosity. The experiments in trehalose give the dynamics at infinite viscosity and are used to separate the viscosity-dependent dynamics from the viscosity-independent dynamics. Although the HbCO dynamics are the same in the red blood cell and in the equivalent aqueous solutions, differences in the absorption spectra show that the distribution of a protein's equilibrium substates is sensitive to small pH differences.

Erythrocytes↗

PubMed2004

Spectral diffusion in a fluctuating charge model of water.

We apply the combined electronic structure/molecular dynamics approach of Corcelli, Lawrence, and Skinner [J. Chem. Phys. 120, 8107 (2004)] to the fluctuating charge (SPC-FQ) model of liquid water developed by Rick, Stuart, and Berne [J. Chem. Phys. 101, 6141 (1994)]. For HOD in H(2)O the time scale for the long-time decay of the OD stretch frequency time-correlation function, which corresponds to the time scale for hydrogen-bond rearrangement in the liquid, is about 1.5 ps. This result is significantly longer than the 0.9 ps decay previously calculated for the nonpolarizable SPC/E water model. Our results for the SPC-FQ model are in better agreement with recent vibrational echo experiments.

Chemistry, Physical↗

PubMed2004

Fifth-order contributions to ultrafast spectrally resolved vibrational echoes: heme-CO proteins.

The fifth order contributions to the signals of ultrafast infrared spectrally resolved stimulated vibrational echoes at high intensities have been investigated in carbonmonoxy heme proteins. High intensities are often required to obtain good data. Intensity dependent measurements are presented on hemoglobin-CO (Hb-CO) and a mutant of myoglobin, H64V-CO. The spectrally resolved vibrational echoes demonstrate that fifth order effects arise at both the 1-0 and the 2-1 emission frequencies of the stretching mode of the CO chromophore bound at the active site of heme proteins. Unlike one-dimensional experiments, in which the signal is integrated over all emission frequencies, spectrally resolving the signal shows that the fifth order contributions have a much more pronounced influence on the 2-1 transition than on the 1-0 transition. By spectrally isolating the 1-0 transition, the influence of fifth order contributions to vibrational echo data can be substantially reduced. Analysis of fifth order Feynman diagrams that contribute in the vibrational echo phase-matched direction demonstrates the reason for the greater influence of fifth order processes on the 1-2 transition, and that the fifth order contributions are heterodyne amplified by the third order signal. Finally, it is shown that the anharmonic oscillations in vibrational echo data of Hb-CO that previous work had attributed strictly to fifth order effects arise even without fifth order contributions.

Carbon Monoxide↗

PubMed2004

Photoinduced electron transfer and geminate recombination for photoexcited acceptors in a pure donor solvent.

Photoinduced electron transfer and geminate recombination are studied for the systems rhodamine 3B (R3B(+)) and rhodamine 6G (R6G(+)), which are cations, in neat neutral N,N-dimethylaniline (DMA). Following photoexcitation of R3B(+) or R6G(+) (abbreviated as R(+)), an electron is transferred from DMA to give the neutral radical R and the cation DMA(+). Because the DMA hole acceptor is the neat solvent, the forward transfer rate is very large, approximately 5x10(12) s(-1). The forward transfer is followed by geminate recombination, which displays a long-lived component suggesting several percent of the radicals escape geminate recombination. Spectrally resolved pump-probe experiments are used in which the probe is a "white" light continuum, and the full time-dependent spectrum is recorded with a spectrometer/charge-coupled device. Observations of stimulated emission (excited state decay-forward electron transfer), the R neutral radical spectrum, and the DMA(+) radical cation spectrum as well as the ground-state bleach recovery (geminate recombination) make it possible to unambiguously follow the electron transfer kinetics. Theoretical modeling shows that the long-lived component can be explained without invoking hole hopping or spin-forbidden transitions.

Journal Article↗

PubMed2003

Hydrogen bond dynamics probed with ultrafast infrared heterodyne-detected multidimensional vibrational stimulated echoes.

Hydrogen bond dynamics are explicated with exceptional detail using multidimensional infrared vibrational echo correlation spectroscopy with full phase information. Probing the hydroxyl stretch of methanol-OD oligomers in CCl4, the dynamics of the evolving hydrogen bonded network are measured with ultrashort (<50 fs) pulses. The data along with detailed model calculations demonstrate that vibrational relaxation leads to selective hydrogen bond breaking on the red side of the spectrum (strongest hydrogen bonds) and the production of singly hydrogen bonded photoproducts.

Deuterium↗

PubMed2003

Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Spectrally resolved infrared stimulated vibrational echo data were obtained for sperm whale carbonmonoxymyoglobin (MbCO) at 300 K. The measured dephasing dynamics of the CO ligand are in agreement with dephasing dynamics calculated with molecular dynamics (MD) simulations for MbCO with the residue histidine-64 (His64) having its imidazole epsilon nitrogen protonated (N(epsilon)-H). The two conformational substate structures B(epsilon) and R(epsilon) observed in the MD simulations are assigned to the spectroscopic A(1) and A(3) conformational substates of MbCO, respectively, based on the agreement between the experimentally measured and calculated dephasing dynamics for these substates. In the A(1) substate, the N(epsilon)-H proton and N(delta) of His64 are approximately equidistant from the CO ligand, while in the A(3) substate, the N(epsilon)-H of His64 is oriented toward the CO, and the N(delta) is on the surface of the protein. The MD simulations show that dynamics of His64 represent the major source of vibrational dephasing of the CO ligand in the A(3) state on both femtosecond and picosecond time scales. Dephasing in the A(1) state is controlled by His64 on femtosecond time scales, and by the rest of the protein and the water solvent on longer time scales.

Animals↗

PubMed2003

Experimental observation of a nearly logarithmic decay of the orientational correlation function in supercooled liquids on the picosecond-to-nanosecond time scales.

Dynamics of five supercooled molecular liquids have been studied using optical heterodyne detected optical Kerr effect experiments. "Intermediate" time scale power law decays (approximately 2 ps to 1-10 ns) with temperature independent exponents close to -1 have been observed in all five samples from high temperature to approximately T(c), the mode-coupling theory (MCT) critical temperature. The amplitude of the intermediate power law increases with temperature as [(T-T(c))/T(c)](1/2). The results cannot be explained by standard MCT, and one possible explanation within MCT would require the higher order singularity scenario, thought to be highly improbable, to be virtually universal.

Journal Article↗

PubMed2001

Two-dimensional time-frequency ultrafast infrared vibrational echo spectroscopy.

2D spectrally resolved ultrafast (<200 fs) IR vibrational echo experiments were performed on Rh(CO)(2)acac [(acetylacetonato)dicarbonylrhodium (I)]. The 2D spectra display features that reflect the 0-1 and 1-2 transitions and the combination band transition of the symmetric (S) and antisymmetric (A) CO stretching modes. Three oscillations in the data arise from the frequency difference between the S and A modes (quantum beats) and the S and A anharmonicities. A new explanation is given for these "anharmonic" oscillations. Calculations show that spectral resolution enables the 0-1 and 1-2 dephasing to be measured independently.

Organometallic Compounds↗

PubMed2001

Fast protein dynamics probed with infrared vibrational echo experiments.

IR vibrational echo experiments are used to study dynamics in myoglobin (Mb) by investigating the dephasing of the CO-stretching mode of CO bound at the active site of the protein (Mb-CO). The temperature dependence and the viscosity dependence of Mb-CO pure dephasing have been measured in several solvents. In low-temperature, glassy solvents, the pure dephasing has a power law temperature dependence, T(1.3), that reflects glasslike protein dynamics. In liquids, the temperature dependence is much steeper and arises from a combination of pure temperature dependence and the influence of decreasing solvent viscosity with increasing temperature. As the solvent viscosity decreases, the ability of the protein's surface to undergo topological fluctuations increases, which in turn increases the internal protein-structural fluctuations. The protein-structural motions are coupled to the CO bound at the active site by electric field fluctuations that accompany movements of polar residues. The dynamic electric field-coupling mechanism is tested by observing differences in the temperature dependence of the pure dephasing of Mb-CO mutations.

Carbon Monoxide↗

PubMed1986

Effect of cholesterol on viscoelastic properties of dipalmitoylphosphatidylcholine multibilayers as measured by a laser-induced ultrasonic probe.

Using a novel laser-induced ultrasonic probe, we have examined the bulk viscoelastic properties of fully hydrated dipalmitoylphosphatidylcholine (DPPC) aligned multibilayers in terms of the anisotropic in-plane elastic stiffness (C11) and viscosity (eta 11). Our measurements of C11 are in accord with those reported on Brillouin light scattering on a similar system. Our measurements on viscosity are the first of their kind and are, on the average, a factor of 10 lower than microviscosities estimated by spectroscopic techniques. We report the first comprehensive study of the effects of cholesterol on the bulk mechanical properties of DPPC multibilayers. At temperatures above the phase transition temperature of DPPC (Tc), an increase in both C11 and eta 11 is noticed when cholesterol is incorporated in the multibilayers. However, at temperatures below Tc, no measurable changes are detected in either C11 or eta 11. These results, reflecting changes in the bulk viscoelastic properties of the multibilayers, differ from the changes reported by local fluidity parameters in that the latter indicate a decrease in the bilayer fluidity in the presence of cholesterol above Tc and an increase below Tc ("dual effect" of cholesterol). Our data suggest that the "dual effect" of cholesterol is noticeable only on a molecular scale. Increasing cholesterol concentrations higher than 20 mol % cease to further affect C11 or eta 11 of the DPPC multibilayers. This agrees with various results reported in the literature, by techniques measuring the local effects of cholesterol, and supports the changes in molecular organization postulated to occur when cholesterol concentration reaches 20 mol % in the lipid bilayers.

Cholesterol↗

PubMed1985

A laser-induced ultrasonic probe of the mechanical properties of aligned lipid multibilayers.

The recently developed laser-induced phonon spectroscopy (LIPS) technique is applied to the determination of dynamic mechanical properties of aligned dilauroylphosphatidylcholine (DLPC) multibilayer arrays containing 2 and 20% water by weight. Sample excitation by two crossed 100-ps laser pulses generates a longitudinal ultrasonic wave whose wavelength depends on the crossing angle. In these experiments, the acoustic wave propagates parallel to the bilayer planes. The ultrasonic velocity and attenuation are monitored through the diffraction of a variably delayed probe pulse by the acoustic grating. The velocity measures the lateral area compressibility of the bilayers, while the attenuation is related to the viscosity. Velocities obtained in the gel and liquid crystal phases are compared with those found previously using Brillouin scattering. The acoustic attenuation is shown to be an order of magnitude more sensitive to the gel-liquid crystal phase transition than the velocity. The lipid area compressibility and viscosity of DLPC-20% water multilayers with and without 100 mM CaCl2 are found to be identical within our experimental error.

Lasers↗

PubMed1984

Excitation transport and trapping in a synthetic chlorophyllide substituted hemoglobin: orientation of the chlorophyll S1 transition dipole.

Excitation transport in synthetic zinc chlorophyllide substituted hemoglobin has been observed by pico -second time-resolved fluorescence depolarization experiments. In this hybrid molecular system, two zinc chlorophyllide molecules are substituted into the beta-chains of hemoglobin, while deoxy hemes remain in the alpha-chains. The rate of excitation transfer between the two chlorophyllides is analyzed in terms of the distance and orientation dependences predicted by the F orster dipole-dipole theory. In this analysis, the beta-beta interchromophore geometry is assumed to be that of the deoxyhemoglobin crystal structure. When combined with steady-state fluorescence depolarization data of the complementary hybrid containing zinc chlorophyllide in the alpha-chains, these experiments provide the necessary information to determine the orientation of the S1 transition dipole moment in the zinc chlorophyllide molecule. We also find that the fluorescence lifetime of the zinc chlorophyllide is 1.42 ns when the heme is in the deoxy state but 3.75 ns when the heme is ligated to carbon monoxide. This is explained by irreversible excitation transfer from the S1 state of the zinc chlorophyllide to the lower energy excited states present in deoxy heme.

Chlorophyll↗