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Biomedical subjects

M Dingfelder

Publications and source records attributed to M Dingfelder.

8 recordsLinked to original sources

Monte Carlo modelling of energy deposition in trabecular bone.

This study includes the design and testing of a program that creates quadric-based geometric models of the trabecular region, designed specifically for use with the 2005 version of the Monte Carlo radiation transport code PENELOPE. Our model was tested, by comparison with published data, in two aspects: the distributions of path lengths throughout the geometry and absorbed fraction values from the monoenergetic emission of electrons from within our geometry. In both comparisons, our results show a close agreement with published methods.

Animals↗

Heavy ion track structure simulations in liquid water at relativistic energies.

Interaction cross sections for bare heavy charged (HZE) particles are obtained from proton interaction cross sections by scaling laws. Proton interaction cross sections are calculated within the (relativistic) plane wave Born approximation and the modelled dielectric response function of liquid water. Relativistic polarisation effects (Fermi density effect) are discussed. The interaction model is implemented into the biophysical track structure simulation code PARTRAC.

Biopolymers↗

Cross section calculations in condensed media: charged particles in liquid water.

Ionisation cross sections for charged particles are deduced within the framework of the relativistic plane wave first Born approximation and the classical electromagnetic theory. The macroscopic dielectric response function is related to the atomic generalised oscillator strength. Interaction cross sections for proton impact on liquid water are presented and discussed. A semi-empirical model for the angular distribution of secondary electrons produced by proton impact on liquid water, which is based on the Bethe approach, is presented.

Computer Simulation↗

Simulation of DNA damage after proton and low LET irradiation.

A module for proton track structure simulation in liquid water was implemented in the biophysical model PARTRAC. Simulated tracks of energy deposition events from the radiation under investigation were superimposed on a higher-order DNA target model describing the whole genome inside a human cell. The parameters controlling DNA damage from direct and indirect effects were adapted to agree with yields and pathway contributions derived from gamma ray irradiation experiments. Single and double strand break (DSB) induction was simulated for irradiations by protons, photons and electrons over a wide range of initial energies. The relative biological effectiveness for DSB induction after proton irradiation was found to rise from 1.2 at 5 keV.micron-1 to about 2.5 at 70 keV.micron-1. About half of this growth resulted from an increased production of DSB clusters associated with small (< 10 kbp) fragments.

Computer Simulation↗

Stochastic aspects and uncertainties in the prechemical and chemical stages of electron tracks in liquid water: a quantitative analysis based on Monte Carlo simulations.

A new physical module for the biophysical simulation code PARTRAC has recently been developed, based on newly derived electron inelastic-scattering cross-sections in liquid water. In the present work, two modules of PARTRAC describing the production, diffusion and interaction of chemical species were developed with the specific purpose of quantifying the role of the uncertainties in the parameters controlling the early stages of liquid water radiolysis. A set of values for such parameters was identified, and time-dependent yields and frequency distributions of chemical species produced by electrons of different energies were calculated. The calculated yields were in good agreement with available data and simulations, thus confirming the reliability of the code. As the primary-electron energy decreases down to 1 keV, the *OH decay kinetics were found to get faster, reflecting variations in the spatial distribution of the initial energy depositions. In agreement with analogous works, an opposite trend was found for energies of a few hundred eV, due to the very small number of species involved. The spreading effects shown at long times by *OH frequency distributions following 1 keV irradiation were found to be essentially due to stochastic aspects of the chemical stage, whereas for 1 MeV tracks the physical and pre-chemical stages also were found to play a significant role. Relevant differences in the calculated e(aq) -yields were found by coupling the physics of PARTRAC with descriptions of the pre-chemical and chemical stages adopted in different models. This indicates a strict interrelation of the various stages, and thus a strong dependence of the parameter values on the assumptions made for the preceding and subsequent stages of the process. Although equally acceptable results can be obtained starting from different assumptions, it is necessary to keep control of such uncertainties, since they can significantly influence the modeling of radical attack on DNA and, more generally, radiobiological damage estimation. This study confirms the need for new, independently derived data on specific steps of water radiolysis, to be included in comprehensive biophysical simulation codes.

Algorithms↗

The Bethe surface of liquid water.

The Bethe surface of liquid water, which was previously calculated by using a semiempirical model, is compared with recently available data from IXS experiments (inelastic x-ray scattering; Compton scattering of high energy photons) in liquid water. No alarming discrepancy is found for a global view of the Bethe surface, in part because the two sets of data have been constrained by the Bethe sum rule. The shape of the Bethe ridge given by the new data is broader than that obtained through the impulse approximation. The extrapolation to the optical limit (viz., at zero momentum transfer) is shown, and the reliability of these data is discussed in detail.

Models, Molecular↗