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Biomedical subjects

M G Cottam

Publications and source records attributed to M G Cottam.

6 recordsLinked to original sources

Spin waves in nickel nanorings of large aspect ratio.

The spin dynamics of high-aspect-ratio nickel nanorings in a longitudinal magnetic field have been investigated by Brillouin spectroscopy and the results are compared with a macroscopic theory and three-dimensional micromagnetic simulations. Good agreement is found between the measured and calculated magnetic field dependence of the spin wave frequency. Simulations show that as the field decreases from saturation, the rings switch from a "bamboo" to a novel "twisted bamboo" state at a certain critical field, and predict a corresponding dip in the dependence of the spin wave frequency on the magnetic field.

Journal Article↗

Spin-wave quantization in ferromagnetic nickel nanowires.

The dynamical properties of uniform two-dimensional arrays of nickel nanowires have been investigated by inelastic light scattering. Multiple spin waves are observed that are in accordance with dipole-exchange theory predictions for the quantization of bulk spin waves. This first study of the spin-wave dynamics in ferromagnetic nanowire arrays reveals strong mode quantization effects and indications of a subtle magnetic interplay between nanowires. The results show that it is important to take proper account of these effects for the fundamental physics and future technological developments of magnetic nanowires.

Journal Article↗

Segregation of photosystems in thylakoid membranes as a critical phenomenon.

The distribution of the two photosystems, PSI and PSII, in grana and stroma lamellae of the chloroplast membranes is not uniform. PSII are mainly concentrated in grana and PSI in stroma thylakoids. The dynamics and factors controlling the spatial segregation of PSI and PSII are generally not well understood, and here we address the segregation of photosystems in thylakoid membranes by means of a molecular dynamics method. The lateral segregation of photosystems was studied assuming a model comprising a two-dimensional (in-plane), two-component, many-body system with periodic boundary conditions and competing interactions between the photosystems in the thylakoid membrane. PSI and PSII are represented by particles with different values of negative charge. The pair interactions between particles include a screened Coulomb repulsive part and an exponentially decaying attractive part. The modeling results suggest a complicated phase behavior of the system, including quasi-crystalline phase of randomly distributed complexes of PSII and PSI at low ionic screening, well defined clustered state of segregated complexes at high screening, and in addition, an intermediate agglomerate phase where the photosystems tend to aggregate together without segregation. The calculations demonstrated that the ordering of photosystems within the membrane was the result of interplay between electrostatic and lipid-mediated interactions. At some values of the model parameters the segregation can be represented visually as well as by analyzing the correlation functions of the configuration.

Biophysical Phenomena↗

Mapping of statistical physics to information theory with application to biological systems.

The problem of achieving a mapping of formalisms in statistical physics and theoretical biology to information theory is discussed using an example for canonical ensembles. We extend the meaning of the Handscomb Monte-Carlo method to a general recipe for the transformation from a "configuration" space to a "sentence" space. The ensemble of "sentences" and its corresponding source uncertainty function are introduced. A possible mapping procedure based on a generalization of the Handscomb representation is described. For a biological illustration, we present a way to introduce a pathway representation to describe metabolic processes in living systems.

Animals↗

A two-dimensional many-body system with competing interactions as a model for segregation of photosystems in thylakoids of green plants.

We address the segregation of photosystems I (PSI) and II (PSII) in thylakoid membranes by means of a molecular dynamics method. We assume a two-dimensional (in-plane) problem with PSI and PSII being represented by particles with different values of negative charge. The pair interactions between particles include a screened Coulomb repulsive part and am exponentially decaying attractive part. Our modeling results suggest that the system may have a complicated phase behavior, including a quasi-crystalline phase at low ionic screening, a disordered phase and, in addition, a possible "clotting" agglomerate phase at high screening where the photosystems tend to clot together. The relevance of the observed phenomena to the stacking of thylakoid membranes is discussed.

Biophysical Phenomena↗

Diagrammatic approach to calculation of the fluctuation correlation matrix in a metabolic system.

We present here a simple diagrammatic approach for the time evolution of the fluctuations in metabolite concentrations around the steady state. A fluctuation correlation matrix is introduced to characterise the response in the concentrations of metabolites to a singular initial fluctuation in one of the metabolites. We show how the temporal evolution of the correlation matrix can be represented in the form of a series with individual terms corresponding to pathways on a metabolic graph. The basic properties of such graphs are studied and it is shown how each term in the series can be evaluated. A Monte-Carlo procedure is outlined to calculate the fluctuation correlation matrix. We discuss various properties of the graphical representation and discuss links to information theory that arise from it.

Animals↗