Biomedical subjects

M J Sculley

Publications and source records attributed to M J Sculley.

15 recordsLinked to original sources

PubMed1996

Slow-binding inhibition: the general case.

Two basic kinetic mechanisms have been described to account for the slow-binding inhibition of enzyme-catalyzed reactions. One mechanism involves the slow interaction of an inhibitor with enzyme (Mechanism A), while the other involves the rapid formation of an enzyme-inhibitor complex that undergoes a slow isomerization reaction (Mechanism B). But the initial interaction of enzyme and inhibitor may not necessarily be fast so that the free enzyme and the two forms of enzyme inhibitor complex are in steady-state equilibrium. This assumption would give rise to a more general form of Mechanism B. The present study has been concerned with attempts to determine whether it might be possible to distinguish between the three possible inhibition mechanisms by steady-state kinetic techniques. The approach to the investigation has been to derive theoretical data for the most general mechanism by using three different ratios for the two rate constants that determine which mechanism applies. The progress curve data were then fitted to the rate equations that describe the other two mechanisms. The results draw attention to the difficulties of deducing that experimental data conform to the most general mechanism. They also show how the values for the kinetic parameters, as determined from fits of the data to the equations that describe Mechanisms A and B, can be considerably in error.

Chemical Phenomena↗

PubMed1991

Investigation of ionic stability criteria for ion-permeable charged membranes.

The flocculation criteria in the DLVO theory of colloid stability are applied to ion-permeable membranes containing ionizable fixed groups. These groups are not restricted to the membrane surface but are uniformly distributed throughout a thick surface layer. The flocculation concentrations for such membranes are calculated by using a numerical method to solve the nonlinear Poisson-Boltzmann equation. Results are compared with calculations previously carried out for more restrictive models of biological membranes. The flocculation concentrations are shown to depend on the density of ionizable groups, the dissociation constant of these groups, and the pH of the bulk solution.

Journal Article↗

PubMed1986

Calculation of ionic flocculation concentrations for biological membranes bearing ionizable groups.

The flocculation concentrations in the DLVO theory of colloid stability have previously been calculated under conditions of constant plate potential or constant plate charge. These boundary conditions are not appropriate in the case of biological membranes bearing ionizable surface groups. In this case the surfaces undergo charge regulation as they approach each other and both the surface charge and potential vary. In this paper a numerical method is used to calculate the ionic flocculation concentrations for the two membranes undergoing surface charge regulation. It is shown that the flocculation concentration lies between that for constant charge and that for constant potential. Flocculation concentrations are calculated as a function of the surface density of ionizable groups and are shown to be dependent on both the pKa of the surface groups and the bulk pH of the solution.

Electrochemistry↗

PubMed1984

Indefinite self-association of a solute in linear and branched arrays.

Theory is formulated using reacted-site probability functions to relate the concentration of monomer to that of total solute for a multivalent monomer which undergoes indefinite self-association to form an equilibrium array of linear chains and branched networks governed by a single site-binding constant. In turn, this intrinsic constant is related to the stoichiometric equilibrium constants describing successive additions of monomer; and the characterization of the composition of the mixture at different total concentrations is discussed together with the onset of gelation, which occurs when each polymer (excluding the infinite network) attains a maximum concentration. Analogous expressions defining solution composition are presented for indefinitely self-associating systems involving non-identical sites when interactions occur in a head-to-tail fashion between dissimilar sites. Finally, a bivalent monomer is considered with head-to-head and tail-to-tail interactions forming an indefinite array of polymers with alternating bond types. It is shown that the latter description is quantitatively consistent with results obtained previously on the indefinitely self-associating zinc-free insulin system. The postulated self-association pattern involving two site-binding constants of magnitudes 5.75 X 10(4) M-1 and 0.85 X 10(4) M-1 is preferred to earlier suggested models on the basis of information available from X-ray crystallographic studies on insulin.

Animals↗

PubMed1984

A new theoretical approach to the investigation of the symmetry of protein oligomers with bifunctional reagents.

The use of bifunctional reagents to form cross-links between subunits in protein oligomers and subsequent disruption of noncovalent interactions with SDS allows comment upon the number of subunits and the symmetry in the original assembly. In existing treatments the number of equations needed to describe theoretically the proportions of all the cross-linked species that can be formed as a function of time in this way makes the analysis of the system unmanageable for proteins with more than four subunits. A method is presented that allows the required equations for any oligomer to be formulated as an algorithm suitable for solution by computer. Its application is illustrated with reference to experimental results obtained with two protein hexamers, Jasus hemocyanin and alpha-urease from jack bean.

Journal Article↗

PubMed1983

The influence of poly(ethylene glycol) 6000 on the properties of skeletal-muscle actin.

Poly(ethylene glycol) 6000 affected many of the properties of skeletal-muscle actin. It accelerated the rate and increased the extent of actin polymerization as measured by light-scattering and sedimentation studies respectively. Moreover, intrinsic-fluorescence measurements showed that addition of poly(ethylene glycol) 6000 decreased the rate of EDTA-induced denaturation of actin monomer and increased the temperature at which irreversible conformational changes occur in actin monomer. These effects occurred without any apparent direct binding interaction and are postulated to be a consequence of the effect of excluded volume on the thermodynamic activity of actin. A relationship based on spherical geometry was formulated which described the co-volume increment that occurs upon addition of a monomer to a long linear polymer in the presence of a space-filling macromolecule. The application of this relationship to the poly(ethylene glycol) 6000-actin system was not without assumption, but it permitted quantitative estimation of the co-volume increment which proved to be of the sign and magnitude required to explain the increased extent of actin polymerization found experimentally in the presence of various concentrations of poly(ethylene glycol) 6000. It is suggested that, in vivo, excluded volume may play a role in actin-filament formation and in the maintenance of the native G-actin structure.

Actins↗

PubMed1983

Effects of thermodynamic nonideality in kinetic studies.

Experimental evidence is presented for concentration dependence of the pseudo-first-order rate constant describing the rate of inversion of sucrose by 2 M HCl; and also of the increase in maximal velocity for the catalytic reduction of pyruvate by lactate dehydrogenase that results from addition of the inert macromolecular solutes bovine serum albumin, ovalbumin, and Dextran T70. These somewhat unusual and seemingly diverse observations are examined in terms of a theory formulated on the basis of two equilibrium reactions, the first describing complex formation between two reactants, and the second isomerization of that complex to an activated state prior to product formation. This formulation permits consideration of activity coefficient ratios relevant to the equilibria and the expression of these ratios as power series in total solution composition. Quantitative assessment of the experimental results is made possible in these terms by estimating the magnitudes of the constant coefficients of the virial expansions as excluded volumes. It is concluded that the result observed in the sucrose inversion study finds rational explanation in thermodynamic nonideality factors governing the overall equilibrium between the reactants and the activated complex of sucrose and hydronium ion. For the enzyme-catalyzed reaction the same general equation applies but particular attention is given to the simplified form that is relevant to high substrate concentrations, where, in the absence of inert compounds, the conventional maximal velocity is approached. In this region an increase in velocity observed upon addition of an inert macromolecular component may be considered explicitly in terms of excluded volume effects related to a shape change in the isomerization between enzyme-substrate complex and its activated state.

Animals↗

PubMed1983

Effects of thermodynamic nonideality in ligand binding studies.

Effects of thermodynamic nonideality are considered in relation to the quantitative characterization of the interaction between a small ligand. S, and a macromolecular acceptor. A, by two types of experimental procedure. The first involves determination of the concentration of ligand in dialysis equilibrium with the acceptor/ligand mixture, and the second, measurement of the concentration of unbound ligand in the reaction mixture by ultrafiltration or the rate of dialysis method. For each situation explicit expressions are formulated for the appropriate binding function with allowance for composition-dependent nonideality effects expressed in terms of molar volume, charge-charge interaction and covolume contributions. The magnitudes of these effects are explored with the aid of experimental studies on the binding of tryptophan and of methyl orange to bovine serum albumin. It is concluded for experiments conducted utilizing either equilibrium dialysis or frontal gel chromatography that, provided a correction is made for any Donnan redistribution of ligand, theoretically predicted acceptor-concentration dependence is likely to be negligible and that use of the conventional binding equation written for an ideal system is appropriate to the analysis of the results. Use of ultrafiltration or the rate of dialysis method requires examination of the assumption that the activity coefficient ratio y(A)y(s)/y(AS) for the reaction mixture approximates unity; but again reassurance is provided that nonideality manifested as a dependence of the binding function on acceptor concentration is unlikely to be significant.

Journal Article↗

PubMed1982