Biomedical subjects

M Nakatsuji

Publications and source records attributed to M Nakatsuji.

4 recordsLinked to original sources

PubMed2001

First isolation of monomeric N-alkoxyarylaminyl radicals and their chemical and magnetic properties.

The present report describes the first isolation of monomeric N-alkoxyarylaminyls and their chemical and magnetic properties. Reaction of the corresponding lithium amides of 2,4-diaryl-6-tert-butylanilines, 2,6-diaryl-4-tert-butylanilines, or 2,4,6-triarylanilines with tert-butyl peroxybenzoate in THF at -78 degrees C yielded quite persistent N-tert-butoxy-2,4-diaryl-6-tert-butylphenylaminyls (1), N-tert-butoxy-2,6-diaryl-4-tert-butylphenylaminyls (2), and N-tert-butoxy-2,4,6-triarylphenylaminyls (3), respectively, which were isolated in the monomeric form in 17-25% yields. All radicals prepared were oxygen insensitive and thermally very stable. X-ray crystallographic analyses were carried out for two radicals, and it was shown that the N and O atoms are coplanar with the anilino benzene ring. The ESR spectra of 1-3 gave a(N) = 0.984-1.05 and a(H) (anilino meta) = 0.158-0.170 mT (g = 2.0041-2.0043), indicating that the unpaired electron mainly resides on the nitrogen and anilino benzene ring. Magnetic susceptibility measurements for 1 and 3 showed that one radical revealed a weak ferromagnetic interaction and an analysis by the Curie-Weiss law gave 0.3 K as theta. The other radicals examined showed weak antiferromagnetic interactions and theta's were determined to be -0.3 to -1.5 K.

Journal Article↗

PubMed2001

pi-topology and spin alignment utilizing the excited molecular field: observation of the excited high-spin quartet (S = 3/2) and quintet (S = 2) states on purely organic pi-conjugated spin systems.

As a model system for the photoinduced/photoswitched spin alignment in a purely organic pi-conjugated spin system, 9-[4-(4,4,5,5-tetramethyl-1-yloxyimidazolin-2-yl)phenyl]anthracene (1a), 9-[3-(4,4,5,5-tetramethyl-1-yloxyimidazolin-2-yl)phenyl]anthracene (1b), 9,10-bis[4-(4,4,5,5-tetramethyl-1-yloxyimidazolin-2-yl)phenyl]anthracene (2a), and 9,10-bis[3-(4,4,5,5-tetramethyl-1-yloxyimidazolin-2-yl)phenyl]anthracene (2b) were designed and synthesized. In these spin systems, 9-phenylanthracene and 9,10-diphenylanthracene were chosen as photo spin couplers and iminonitroxide was chosen as a dangling stable radical. Time-resolved electron spin resonance (TRESR) spectra of the first excited states with resolved fine-structure splittings were observed for 1a and 2a in an EPA or a 2-MTHF rigid glass matrix. Using the spectral simulation based on the eigenfield method, the observed TRESR spectra for 1a and 2a were unambiguously assigned as an excited quartet (S = 3/2) spin state (Q) and an excited quintet (S = 2) spin state (Qu), respectively. The g value and fine-structure splitting for the quartet state of 1a were determined to be g(Q) = 2.0043, D(Q) = 0.0235 cm(-1), and E(Q) = 0.0 cm(-1). The relative populations (polarization) of each M(S)() sublevel in Q were determined to be P(+1/2') = P(-1/2') = 0.5 and P(+3/2') = P(-3/2') = 0.0 with an increasing order of energy in zero magnetic field. The spin Hamiltonian parameters for Qu are g = 2.0043, D = 0.0130 cm(-1), and E = 0.0 cm(-1), and the relative populations in Qu were determined to be P(0') = 0.30, P(-1') = P(+1') = 0.35 and P(-2') = P(+2') = 0.0. These are the first observations of a photoexcited quartet and a quintet high-spin state in pi-conjugated triplet-radical pair systems. In contrast high-spin excited states were not observed for 1b and 2b, the pi-topological isomers of 1a and 2a, showing the role of pi-topology in the spin alignment of the excited states. Since a weak antiferromagnetic exchange interaction was observed in the ground state of 2a, the clear detection of the excited quintet high-spin state shows that the effective exchange coupling between the two dangling radicals through the diphenylanthracene spin coupler has been changed from antiferromagnetic to ferromagnetic upon photoexcitation. Thus, a photoinduced spin alignment utilizing the excited triplet molecular field was realized for the first time in the purely organic pi-conjugated spin system. Furthermore, the mechanism for the generation of dynamic electron spin polarization was investigated for the observed quartet and quintet states, and a plausible mechanism of the enhanced selective intersystem crossing was proposed. Ab initio molecular orbital calculations based on density functional theory were carried out to determine the electronic structures of the excited high-spin states and to understand the mechanism of the spin alignment utilizing the excited molecular field. The role of the spin delocalization and the spin polarization mechanisms were revealed on the photoexcited state.

Journal Article↗

PubMed1999

Characterization and application to hot start PCR of neutralizing monoclonal antibodies against KOD DNA polymerase.

DNA polymerase from Pyrococcus kodakaraensis KOD1 (KOD DNA polymerase) is one of the most efficient thermostable PCR enzymes exhibiting higher accuracy and elongation velocity than any other commercially available DNA polymerase [M. Takagi et al. (1997) Appl. Environ. Microbiol. 63, 4504-4510]. However, even when KOD DNA polymerase was used for PCR, troubles with nonspecific DNA amplification and primer dimer formation still remain because of undesirable DNA polymerase activity during the first denaturing step of PCR. In order to inhibit this undesirable DNA polymerase activity (hot start PCR), two neutralizing monoclonal antibodies (mAbs), 3G8 and betaG1, to KOD DNA polymerase were obtained. Both of these antibodies belong to subclass IgG(1), k. K(d) values were 7.3 x 10(-8) for 3G8 and 1.1 x 10(-6) for betaG1. Nucleotide sequencing of cDNAs of these monoclonal antibodies revealed their sequences to differ in their CDRs (complementarity determining region). Exonuclease activity measurement and epitope mapping revealed that the epitope for 3G8 is located in conserved regions among alpha-like (family B) DNA polymerases (Region II), and the epitope for betaG1 is located in the 3'-5' exonuclease domain. When hot start PCR with each of these mAbs was performed, the specificity of target gene amplification became much higher than in reactions without monoclonal antibody. Furthermore, this method can easily be applied to long distance PCR (>17.5 kbp).

Amino Acid Sequence↗

PubMed1992

Site-specific dissection of E. coli chromosome by lambda terminase.

We have succeeded the targeted cleavage of chromosomes by lambda terminase that introduces double-strand cleavages in DNA recognizing the lambda cos sequence. When chromosomal DNAs of various Escherichia coli K-12 strains were subjected to terminase digestion, all were found to contain two common cleavage sites. Therefore, DNAs from lambda lysogens in which lambda DNA was inserted at different chromosomal sites were specifically cleaved at one more additional site. The two sites, termed ecos1 and ecos2, were mapped at approximately 35.1' and 12.7' of E. coli genetic map. The ecos1 and ecos2 sites were included in qin and qsr' regions, respectively. Therefore, the cleavage sites were associated with cryptic prophages. Sequences at the ecos1 and ecos2 sites showed 98% homology to the lambda cos sequence, indicating high fidelity of sequence recognition by the terminase. Since the strategy for integration of a DNA segment into chromosomal DNA through homologous recombination has been established, the dissection method that uses lambda terminase should be applicable for gene mapping as well as construction of macrophysical maps of larger genomes.

Base Sequence↗