Biomedical subjects

Marco Baiesi

Publications and source records attributed to Marco Baiesi.

9 recordsLinked to original sources

PubMed2006

Fluctuation symmetries for work and heat.

We consider a particle dragged through a medium at constant temperature as described by a Langevin equation with a time-dependent potential. The time dependence is specified by an external protocol. We give conditions on potential and protocol under which the fluctuations of the dissipative work satisfy an exact symmetry for all times. We also present counterexamples to that fluctuation theorem when our conditions are not satisfied. Finally, we consider the dissipated heat, which differs from the work by a temporal boundary term. We explain why there is a correction to the standard fluctuation theorem due to the unboundedness of that temporal boundary. However, the corrected fluctuation relation has again a general validity.

Journal Article↗

PubMed2006

Self-organized-criticality model consistent with statistical properties of edge turbulence in a fusion plasma.

The statistical properties of the intermittent signal generated by a recent model for self-organized criticality are examined. A successful comparison is made with previously published results of the equivalent quantities measured in the electrostatic turbulence at the edge of a fusion plasma. This result reestablishes self-organized criticality as a potential paradigm for transport in magnetic fusion devices, overriding shortcomings pointed out in earlier works [E. Spada, Phys. Rev. Lett. 86, 3032 (2001)10.1103/PhysRevLett.86.3032; V. Antoni, Phys. Rev. Lett. 87, 045001 (2001)10.1103/PhysRevLett.87.045001].

Journal Article↗

PubMed2006

Intensity thresholds and the statistics of the temporal occurrence of solar flares.

Introducing thresholds to analyze time series of emission from the Sun enables a new and simple definition of solar flare events and their interoccurrence times. Rescaling time by the rate of events, the waiting and quiet time distributions both conform to scaling functions that are independent of the intensity threshold over a wide range. The scaling functions are well-described by a two-parameter function, with parameters that depend on the phase of the solar cycle. For flares identified according to the current, standard definition, similar behavior is found.

Journal Article↗

PubMed2006

Scaling of a collapsed polymer globule in two dimensions.

Extensive Monte Carlo data analysis gives clear evidence that collapsed linear polymers in two dimensions fall in the universality class of athermal, dense self-avoiding walks, as conjectured by Duplantier [Phys. Rev. Lett. 71, 4274 (1993)].10.1103/PhysRevLett.71.4274 However, the boundary of the globule has self-affine roughness and does not determine the anticipated nonzero topological boundary contribution to entropic exponents. Scaling corrections are due to subleading contributions to the partition function corresponding to polymer configurations with one end located on the globule-solvent interface.

Journal Article↗

PubMed2005

Enstrophy dissipation in two-dimensional turbulence.

Insight into the problem of two-dimensional turbulence can be obtained by an analogy with a heat conduction network. It allows the identification of an entropy function associated with the enstrophy dissipation and that fluctuates around a positive (mean) value. While the corresponding enstrophy network is highly nonlocal, the direction of the enstrophy current follows from the Second Law of Thermodynamics. An essential parameter is the ratio of the intensity of driving as a function of wave number , to the dissipation strength , where is the viscosity. The enstrophy current flows from higher to lower values of , similar to a heat current from higher to lower temperature. Our probabilistic analysis of the enstrophy dissipation and the analogy with heat conduction thus complements and visualizes the more traditional spectral arguments for the direct enstrophy cascade. We also show a fluctuation symmetry in the distribution of the total entropy production which relates the probabilities of direct and inverse enstrophy cascades.

Journal Article↗

PubMed2005

Interoccurrence times in the Bak-Tang-Wiesenfeld sandpile model: a comparison with the observed statistics of solar flares.

A sequence of bursts observed in an intermittent time series may be caused by a single avalanche, even though these bursts appear as distinct events when noise and/or instrument resolution impose a detection threshold. In the Bak-Tang-Wiesenfeld sandpile, the statistics of quiet times between bursts switches from Poissonian to scale invariant on raising the threshold for detecting instantaneous activity, since each zero-threshold avalanche breaks into a hierarchy of correlated bursts. Calibrating the model with the time resolution of GOES data, qualitative agreement with the interoccurrence time statistics of solar flares at different intensity thresholds is found.

Journal Article↗

PubMed2004

Unbinding of mutually avoiding random walks and two-dimensional quantum gravity.

We analyze the unbinding transition for a two-dimensional lattice polymer in which the constituent strands are mutually avoiding random walks. At low temperatures the strands are bound and form a single self-avoiding walk. We show that unbinding in this model is a strong first order transition. The entropic exponents associated with denaturated loops and end-segment distributions show sharp differences at the transition point and in the high temperature phase. Their values can be deduced from some exact arguments relying on a conformal mapping of copolymer networks into a fluctuating geometry, i.e., in the presence of quantum gravity. An excellent agreement between analytical and numerical estimates is observed for all cases analyzed.

Journal Article↗

PubMed2004

Scale-free networks of earthquakes and aftershocks.

We propose a metric to quantify correlations between earthquakes. The metric consists of a product involving the time interval and spatial distance between two events, as well as the magnitude of the first one. According to this metric, events typically are strongly correlated to only one or a few preceding ones. Thus a classification of events as foreshocks, main shocks, or aftershocks emerges automatically without imposing predetermined space-time windows. In the simplest network construction, each earthquake receives an incoming link from its most correlated predecessor. The number of aftershocks for any event, identified by its outgoing links, is found to be scale free with exponent gamma=2.0(1). The original Omori law with p=1 emerges as a robust feature of seismicity, holding up to years even for aftershock sequences initiated by intermediate magnitude events. The broad distribution of distances between earthquakes and their linked aftershocks suggests that aftershock collection with fixed space windows is not appropriate.

Journal Article↗

PubMed2002

Scaling in DNA unzipping models: denaturated loops and end segments as branches of a block copolymer network.

For a model of DNA denaturation, exponents describing the distributions of denaturated loops and unzipped end segments are determined by exact enumeration and by Monte Carlo simulations in two and three dimensions. The loop distributions are consistent with first-order thermal denaturation in both cases. Results for end segments show a coexistence of two distinct power laws in the relative distributions, which is not foreseen by a recent approach in which DNA is treated as a homogeneous network of linear polymer segments. This unexpected feature, and the discrepancies with such an approach, are explained in terms of a refined scaling picture in which a precise distinction is made between network branches representing single-stranded and effective double-stranded segments.

Journal Article↗