PubMed Health⌕ Search

Biomedical subjects

Mark D Smith

Publications and source records attributed to Mark D Smith.

At least 37 records · Page 2Linked to original sources
PubMed2006

A simple non-destructive method for the fixation and immunostaining of cultured cells encapsulated in alginate.

In the present paper we report a simple non-destructive method for the analysis of cells and their proteins encapsulated in alginate. Investigations with a co-culture of the human hepatoma cell line HepG2 and primary human fibroblasts are reported. We studied the expression of three proteins, namely intracellular alpha-foetoprotein and extracellular albumin, expressed by HepG2, and membrane-bound CD90 (Thy-1), expressed by the fibroblasts. Fluorimetric and colorimetric staining methods were evaluated and compared. We optimized the method by investigating a range of concentrations of the washing buffers. The technique protected the capsule and cell structures and enabled the investigated proteins to be clearly and reliably visualized within the encapsulated co-culture in their respective intracellular, membrane-bound and extracellular domains. These results demonstrate that this simple method is suitable for the non-destructive analysis of protein expression by cells encapsulated in alginate.

Albumins↗
PubMed2005

Non-interpenetrated square-grid coordination polymers synthesized using an extremely long N,N'-type ligand.

Four new, non-interpenetrated square-grid coordination polymers, namely [Mn(L)2(NO3)2]infinity (1), [[Cd(L)2(NO3)2].solvate]infinity (2), [Cd(L)2(NO3)2]infinity (3), and [[Zn(L)2](BF4)2.(C6H6)2.564.(DMF)1.576.(MeOH, H2O)3.454]infinity (4), were synthesized using the new, extremely long N,N'-type ligand: 2,5-bis(4'-(imidazol-1-yl)benzyl)-3,4-diaza-2,4-hexadiene (L). The reaction of Cd(NO3)2 with L leads to two novel structures sharing the same framework composition, [Cd(L)2(NO3)2]infinity, which have different arrangements of L around the metal centers. Both the channel-containing structure and the nonporous structure can be formed by choice of the appropriate solvent system. Moreover, the less stable, channel-containing form readily converts into the more stable, condensed structure upon removal of the guest molecules from the channels.

Journal Article↗
PubMed2005

Unexpected new chemistry of the bis(thioimidazolyl)methanes.

[reaction: see text] The synthesis of the linkage isomers of the bis(thioimidazolyl)methane family of compounds, namely CH(2)(N-tim)(2) (1) and CH(2)(S-tim)(2) (2) (where tim = thio(methyl)imidazolyl) has been reinvestigated in order to optimize the yields, to complete the characterization of these known compounds, and also to ascertain the effect of varying heteroatom binding on their electrochemistry. During the course of these studies, the reactive intermediate ClCH(2)(S-tim) (3) was isolated and characterized. The chloromethyl derivative 3 readily decomposes on warming to give the ionic compound [CH(2)(mu-C(4)H(5)N(2)S)(2)CH(2)](Cl)(2) (4), which was converted to the hexafluorophosphate salt (5) and then was characterized by single-crystal X-ray diffraction. It was also shown that CH(2)(S-tim)(2) (2) could be converted at temperatures greater than 120 degrees C to CH(2)(N-tim)(2) (1) by a thermal isomerization that proceeds via the remaining possible linkage isomer CH(2)(S-tim)(N-tim). Electrochemical studies on 1-3 in acetonitrile reveals that each undergoes irreversible (one electron per ring) oxidations above 0.7 V versus Ag/AgCl, while the ionic compound 5 shows an irreversible reduction wave centered at -1.09 V.

Journal Article↗
PubMed2005

Crystal growth, structural transitions, and magnetic properties of the fluorite-related osmates: Sm3OsO7, Eu3OsO7, and Gd3OsO7.

The Ln3OsO7 (Ln = Sm, Eu, Gd) compounds were grown as single crystals from molten hydroxide fluxes. At temperatures above 235, 330, and 430 K, respectively, the Ln3OsO7 (Ln = Sm, Eu, Gd) compounds exist in the orthorhombic space group Cmcm. When they are cooled below these temperatures, the compounds undergo a structural phase transition from space group Cmcm to P2(1)nb. The structure transition results in a loss of lattice centering, a doubling of the b axis, a distortion of the vertex-shared Os-O chains, and a reduction in the coordination of one of the rare earth cations from 8-fold to 7-fold. Sm3OsO7 and Eu3OsO7 exhibit complex magnetic behavior below about 50 K, and Gd3OsO7 shows a ferromagnetic-like order at 34 K in applied fields of less than 10 kG.

Journal Article↗
PubMed2005

Conformationally imprinted receptors: atropisomers with "write", "save", and "erase" recognition properties.

[reaction: see text] An atropisomeric receptor with "write", "save", and "erase" recognition properties is presented. The receptor adopts a complementary conformation when heating in the presence of an ethyl adenine-9-acetate guest molecule. This complementary hydrogen bonding conformation is "saved" upon cooling to room temperature due to the reestablishment of restricted rotation and is stable even upon removal of the guest. Finally, the atropisomeric receptor can be "erased" by heating in the absence of the guest.

Acetates↗
PubMed2005

Ionic rotors. preparation, structure, and dynamic solid-state 2D NMR study of the 1,4-diethynylbenzenebis(triphenylborate) dianion.

The reaction between p-(LiC2)2C6H4 (generated in situ from butyllithium and dialkynylbenzene) and 2 equiv of BPh3 affords high yields of [Li(THF)4]2[p-(Ph3BC2)2C6H4], a heretofore missing member of the isoelectronic [p-(Ph3EC2)2C6H4] (E = groups 13-15 element) series. The central phenylene linker is free to rotate in the solid state, as determined by a variable-temperature solid-state 2D spin-echo NMR spectroscopic study. At room temperature, the rate of rotation is at least 20 times faster than that of its carbon-based analogue, presumably a result of Coulombic repulsions minimizing noncovalent interactions between rotating units in the borate salt.

Anions↗
PubMed2005

Spontaneously resolved chiral three-fold interpenetrating diamondoidlike Cu(II) coordination polymers with temperature-driven crystal-to-crystal transformation.

The chiral 3-fold interpenetrating diamondoidlike Cu(II)-containing coordination polymer [Cu(2,5-bis(4-pyridyl)-1,3,4-oxadiazole)2(H2O)](ClO4)2]n (1a) is reported. It undergoes a temperature-driven reversible single-crystal-to-single-crystal structural transformation between room- (293 K, 1a) and low-temperature (150 K, 1b) forms.

Journal Article↗
PubMed2005

Addition of palladium and platinum tri-tert-butylphosphine groups to Re-Sn and Re-Ge bonds.

The reaction of Re2(CO)8[mu-eta2-C(H)=C(H)Bu(n)](mu-H) with Ph3SnH at 68 degrees C yielded the new compound Re2(CO)8(mu-SnPh2)2 (10) which contains two SnPh2 ligands bridging two Re(CO)(4) groups, joined by an unusually long Re-Re bond. Fenske-Hall molecular orbital calculations indicate that the bonding in the Re2Sn2 cluster is dominated by strong Re-Sn interactions and that the Re-Re interactions are weak. The 119Sn Mössbauer spectrum of 10 exhibits a doublet with an isomer shift (IS) of 1.674(12) mm s(-1) and a quadrupole splitting (QS) of 2.080(12) mm s(-1) at 90 K,characteristic of Sn(IV) in a SnA2B2 environment. The IS is temperature dependent, -1.99(14) x 10(-4) mm s(-1) K(-1); the QS is temperature independent. The temperature-dependent properties are consistent with the known Gol'danskii-Kariagin effect. The germanium compound Re2(CO)8(mu-GePh2)2 (11) was obtained from the reaction of Re2(CO)8[mu-eta2-C(H)=C(H)Bu(n)](mu-H) with Ph3GeH. Compound 11 has a structure similar to that of 10. The reaction of 10 with Pd(PBu(t)3)2 at 25 degrees C yielded the bis-Pd(PBu(t)3) adduct, Re2(CO)8(mu-SnPh2)2[Pd(PBu(t)3)]2 (12); it has two Pd(PBu(t)3) groups bridging two of the four Re-Sn bonds in 10. Fenske-Hall molecular orbital calculations show that the Pd(PBu(t)3) groups form three-center two-electron bonds with the neighboring rhenium and tin atoms. The mono- and bis-Pt(PBu(t)3) adducts, Re2(CO)8(mu-SnPh2(2)[Pt(PBu(t)3)] (13) and Re2(CO)8(mu-SnPh2)2[Pt(PBu(t)3)]2 (14), were formed when 10 was treated with Pt(PBu(t)3)2. A mono adduct of 11, Re2(CO)8(mu-GePh2)2[Pt(PBu(t)3)] (15), was obtained similarly from the reaction of 11 with Pt(PBu(t)3)2.

Journal Article↗
PubMed2005

Computational prediction of genotoxicity: room for improvement.

Decades of mutagenesis and clastogenesis studies have yielded enough structure-activity-relationship (SAR) information to make feasible the construction of computational models for prediction of endpoints based on molecular structure and reactivity. Although there is cause for optimism that these approaches might someday reduce or eliminate the need for actual genotoxicity testing, we are in fact a long way from this. We provide an overview of the state of the art of such approaches, dissecting out how these models are suboptimal. It is clear that current programs still have limited predictive capabilities. We propose that one of the major contributing factors for the inherent lack of sensitivity (typically 50-60%) is inadequate coverage of non-covalent DNA interactions. Suboptimal specificity can be partly attributed to chemical space considerations with associated non-causal activity correlations.

Animals↗
PubMed2005

Synthesis and characterization of diverse coordination polymers. Linear and zigzag chains involving their structural transformation via intermolecular hydrogen-bonded, interpenetrating ladders polycatenane, and noninterpenetrating square grid from long, rigid N,N'-bidentate ligands: 1,4-bis[(x-pyridyl)ethynyl]benzene (x = 3 and 4).

The long, rigid ligands 1,4-bis[(3-pyridyl)ethynyl]benzene (L1) and 1,4-bis[(4-pyridyl)ethynyl]benzene (L2) were used in the synthesis of 10 new organic-inorganic coordination frameworks, each of them adopting different structural motifs. Synthesis, single-crystal X-ray structure determination, and spectroscopic and thermogravimetric analyses are presented. The reactions between M(NO3)2 x xH2O; M = Cd(II), Cu(II), and Co(II); x = 3-6 and Cu(hfac)2 x H2O [hfac = bis(hexafluoroacetylacetonato)] with L1 afforded the following one-dimensional zigzag chain structures: [Cd(C20H12N2)0.5(NO3)(CH3OH)]n (1, monoclinic, C2/c; a = 7.586(1) A, b = 23.222(1) A, c = 13.572(1) A, beta = 92.824(1), Z = 4); [{Cu(C20H12N2)(NO3)2(CH3OH)} x CH3OH]n (2, orthorhombic, P2(1)2(1)2(1); a = 8.589(1) A, b = 15.766(1) A, c = 17.501(1) A, Z = 4); [Co(C20H12N2)2(NO3)2(H2O)2] (5, triclinic, P1; a = 7.493(1) A, b = 8.948(1) A, c = 14.854(1) A, alpha = 100.427(1), beta = 97.324(1), gamma = 110.901(1), Z = 1); [Cu(C20H12N2)(hfac)2]n (4, monoclinic, C2/c, a = 18.828(1) A, b = 14.671(1) A, c = 13.427(1) A, beta = 90.447(1) degrees, Z = 4). Moreover, the minority phase compound formed from Cu(NO3)2 x 3H2O and L1 yielded a metallocyclic chain structure, [Cu(C20H12N2)(NO3)]n (3, triclinic, P; a = 8.728(1) A, b = 10.018(1) A, c = 11.893(1) A, alpha = 109.991(1), beta = 97.109(1), gamma = 115.542(1), Z = 1). In addition to the dinuclear coordination complex 5, all other polymeric structures (1-4) from L1 are composed of interpenetrating 2D and 3D cross-linked zigzag chains via hydrogen-bonding interactions. The reactions between M(NO3)2 x xH2O; M = Cd(II), Cu(II), and Co(II); x = 3-6 and Cu(hfac)2 x H2O [hfac = bis(hexafluoroacetylacetonato)] and L2 were dependent on the nature of the metal center and resulted in the formation of four different interpenetrating and noninterpenetrating compounds (6-10): [Co(C20H12N2)1.5(NO3)2]n (6, triclinic, P; a = 14.172(1) A, b = 15.795(1) A, c = 18.072(1) A, alpha = 115.380(1), beta = 101.319(1), gamma = 93.427(2), Z = 4), which consists of T-shaped building blocks assembled into three-dimensional interpenetrating polycatenated ladders; [Cd(C20H12N2)2(NO3)2]n (7, monoclinic, I2/a; a = 11.371(1) A, b = 20.311(2) A, c = 15.240(2) A, beta = 100.201(2) degrees, Z = 4), which adopts a two-dimensional noninterpenetrating square-grid motif; [Cu(C20H12N2)(hfac)2]n (8, monoclinic, I2/a; a = 11.371(1) A, b = 20.311(2) A, c = 15.240(2) A, beta = 100.201(2) degrees, Z = 4), composed of three sets of distinct one-dimensional linear chains; [Cu(C20H12N2)(EtOH)(NO3)2] [Cu(C20H12N2)1.5(NO3)2] x 2EtOH (9, triclinic, P; a = 12.248(2) A, b = 13.711(3) A, c = 18.257(4) A, alpha = 108.078(4) degrees, beta = 97.890(4) degrees, gamma = 103.139(5) degrees, Z = 2) and [Cu(C20H12N2)(MeOH)(NO3)2] [Cu(C20H12N2)1.5(NO3)2] x 2MeOH (10, triclinic, P; a = 12.136(1) A, b = 13.738(2) A, c = 17.563(3) A, alpha = 107.663(3) degrees, beta = 94.805(4) degrees, gamma = 104.021(4) degrees, Z = 2). Both 9 and 10 stack into infinite interpenetrating ladders through bundles of infinite chains and are described in our preliminary communication.

Journal Article↗
PubMed2005

An unprecedented coordination mode of the tris(pyrazolyl)methane donor set in {[Ph2(O)POCH2C(pz)3 Ag]2 (THF)2}(BF4)2: kappa2-kappa1 bimetallic, N(sigma)/N(pi) chelating.

The structure of the compound {[Ph2(O)POCH2C(pz)3 Ag]2 (THF)2}(BF4)2 (pz = pyrazolyl ring) revealed a new coordination mode for the tris(pyrazolyl)methane donor set: two pyrazolyl rings bridging the same two silvers atoms using normal sigma-type orbitals on the nitrogen donor atoms while the third pyrazolyl ring coordinates side-on to one of the silver atoms with a nitrogen-based pi-type orbital. The dimeric arrangement is also supported by a weak silver-silver interaction. This bonding description is supported by Fenske-Hall molecular orbital calculations.

Journal Article↗
PubMed2005

Crystal growth and magnetic properties of lanthanide-containing osmium double perovskites, Ln2NaOsO6 (Ln = La, Pr, Nd).

A series of double perovskite oxides, Ln(2)NaOsO(6) (Ln = La, Pr, Nd), has been prepared as single crystals from acidic molten NaOH. All three oxides crystallize in the monoclinic space group P2(1)/n (Glazer tilt system #10, a(-)a(-)b(+)), forming a 1:1 ordered rock salt lattice of the Na(+) and Os(5+) cations. Magnetic susceptibility measurements show evidence of antiferromagnetic correlations in La(2)NaOsO(6) and of a spin-flop transition from an antiferromagnetic to ferromagnetic-like state in both Pr(2)NaOsO(6) and Nd(2)NaOsO(6).

Journal Article↗
PubMed2005

Polymorphism in Fe[(p-IC6H4)B(3-Mepz)3]2 (pz = pyrazolyl): impact of supramolecular structure on an iron(II) electronic spin-state crossover.

The new ligands Na[(p-IC6H4)B(3-Rpz)3] (R = H, Me) have been prepared by converting I2C6H4 to IC6H4SiMe3 with Li(t)Bu and SiMe3Cl, and then to IC6H4BBr2 with BBr3 and subsequent reaction with 3 equiv of (un)substituted pyrazole and 1 equiv of NaO(t)Bu. These new ligands react with FeBr2 to give either purple, low-spin Fe[(p-IC6H4)B(pz)3]2 or colorless, high-spin Fe[(p-IC6H4)B(3-Mepz)3]2. Depending upon the crystallization conditions, Fe[(p-IC6H4)B(3-Mepz)3]2 can exist both as two polymorphs and as a methylene chloride solvate. An examination of these polymorphs by variable-temperature X-ray crystallography, magnetic susceptibility, and Mossbauer spectroscopy has revealed different electronic spin-state crossover properties for each polymorph and yields insight into the influence of crystal packing, independent of other electronic perturbations, on the spin-state crossover. The first polymorph of Fe[(p-IC6H4)B(3-Mepz)3]2 has a highly organized three-dimensional supramolecular structure and does not undergo a spin-state crossover upon cooling to 4 K. The second polymorph of Fe[(p-IC6H4)B(3-Mepz)3]2 has a stacked two-dimensional supramolecular structure, a structure that is clearly less well organized than that of the first polymorph, and undergoes an abrupt iron(II) spin-state crossover from high spin to low spin upon cooling below ca. 130 K. The crystal structure of the methylene chloride solvate of Fe[(p-IC6H4)B(3-Mepz)3]2 has a similar stacked two-dimensional supramolecular structure, but the crystals readily lose the solvate. The resulting desolvate undergoes a gradual spin-state crossover to the low-spin state upon cooling below ca. 235 K. It is clear from a comparison of the structures that the long-range solid-state organization of the molecules, which is controlled by noncovalent supramolecular interactions, has a strong impact upon the spin-state crossover, with the more highly organized structures having lower spin-crossover temperatures and more abrupt spin-crossover behavior.

Journal Article↗
PubMed2005

Formation of third generation poly(pyrazolyl)borate ligands from alkyne coupling reactions of Fe[(p-IC6H4)B(3-Rpz)3]2 (R = H, Me; pz = pyrazolyl): pathways toward controlling an iron(II) electronic spin-state crossover.

Sonogashira coupling reactions of terminal alkynes with Fe[(p-IC6H4)B(3-Mepz)3]2 (pz = pyrazolyl ring) yield Fe[(p-PhC2C6H4)B(3-Mepz)3]2 (2), Fe[(p-Me3SiC2C6H4)B(3-Rpz)3]2 (R = H, 3a, R = Me, 3b), and Fe[(p-HC2C6H4)B(3-Mepz)3]2 (R = H, 4a, R = Me, 4b), a series of new complexes containing "third generation" poly(pyrazolyl)borate ligands. Complex 2 undergoes a fairly gradual iron(II) electronic spin-state crossover with a 30 K hysteresis, whereas complex 3b is an unusual example of a complex with equivalent iron(II) sites in the high-spin form that shows an abrupt 50% spin crossover. For complex 4b, 50% of the iron(II) sites undergo a gradual spin-state transition between 185 and 350 K with an activation energy of 1590 +/- 30 cm(-1) and a T(1/2) = 280 K and, for the remaining iron(II) sites, an abrupt cooperative spin-state crossover between 106 and 114 K. The crystal structures of 4b obtained for each of the three distinct electronic spin states reveal two crystallographically different iron(II) sites, and analysis of the molecular/supramolecular structures indicates that the difference in the degree of pyrazolyl ring tilting in the ligands between the two sites, rather than the strength of the intermolecular forces, play a prominent role in determining the temperature of the spin-state crossover.

Journal Article↗