Crystallographic characterization of difluoropropargyl indium bromide, a reactive fluoroorganometallic reagent.
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Biomedical subjects
Publications and source records attributed to Mark S Mashuta.
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A new polyimidazole tripod N,N-bis((1-methyl-4-pivalamidoimidazol-2-yl)methyl)-N'-((1-methylimidazol-2-yl)methyl)amine (L2) has been synthesized and shown to form intramolecular hydrogen bonds with different axial ligands bonded to Cu(II) in the solid state. The same hydrogen-bonding property of L2 appears responsible for the stabilization of a Cu(II)-OOH species in solution. The crystal structures of L2 and three of its Cu(II) complexes are reported. The [Cu(L2)X]ClO4 complexes, 4-6 (X- = Cl-, OH-, or N3-) have distorted trigonal bipyramidal geometries in the solid state and have been characterized further by UV-vis absorption, electron paramagnetic resonance (EPR) spectroscopy, and cyclic voltammetry. The reaction of [Cu(L2)OH](ClO4) (5) with H2O2 and tert-butyl hydroperoxide in methanol generates [Cu(L2)OOH](ClO4) (7) and [Cu(L2)OO(t)Bu](ClO4) (8) which have been characterized by different spectroscopic methods. The compound [Cu(L2)OO(t)Bu]+ displays a band at 395 nm (epsilon = 950 M(-1) cm(-1)) assigned to an alkylperoxo pi*(sigma) --> Cu ligand-to-metal charge transfer (LMCT) transition, while [Cu(L2)OOH]+ displays a peroxo pi*(sigma) --> Cu charge-transfer transition at 365 nm with epsilon = 1300 M(-1) cm(-1), a mass ion at m/z 593.4, and nu(O-O) stretch (resonance Raman) at 854 cm(-1) that shifts to lower energy by 46 cm(-1) upon 18O substitution.
Exposure of acetonitrile/methanol solutions of [PPN][Ru(DPPBT)3] [PPN = bis(triphenylphosphoranylidene); DPPBT = 2-diphenylphosphinobenzene thiolate] to oxygen initiates metal-centered oxidation, yielding the ruthenium(III) thiolate Ru(DPPBT)3. Ru(DPPBT)3 further reacts with oxygen, at sulfur, to give the ruthenium(III) sulfinate complex [Ru(DPPBT-O2)2(DPPBT)], which is reduced under ambient conditions to [PPN][Ru(DPPBT-O2)2(DPPBT)]. Ruthenium(II) sulfinate is the only product isolated from acetonitrile/methanol. Yellow crystals of [PPN][Ru(DPPBT-O2)2(DPPBT)] were obtained. Ruthenium(III) sulfinate was isolated as green prism-shaped crystals upon oxygenation of [PPN][Ru(DPPBT)3] in chlorobenzene/hexane. Electrochemical oxidation of ruthenium(II) sulfinate yields the ruthenium(III) derivative, which is rapidly reduced back to ruthenium(II) upon the addition of hydroxide.
Crystallization of the title compound, C8H8N4O2, results in the formation of one-dimensional chains of imidazole (im) molecules linked together by strong hydrogen bonds. The O...N(im) separation and O-H(...N) distance are 2.6906 (17) and 1.74 (2) A, respectively, and the O-H...N angle is 173 (2) degrees. The one-dimensional chains are weakly pi stacked along the b axis, with centroid-to-centroid separations of 3.678 (2) A between five- and six-membered rings and 3.963 (2) A between six-membered rings. Each molecule is arranged around an inversion center.
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The self assembly of (bis(1-methyl-imidazol-2-yl)methyl)(1-methyl-4-nitroimidazol-2-yl)methyl)amine and boric acid results in a supramolecular structure containing bundled antiparallel imidazole-boric acid helices and boric acid filled one-dimensional channels.
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The diamino-dithiolato N2S2 ligand N,N'-bis-2-methyl-mercaptopropyl-N,N'-dimethylethylenediamine, H2bmmp-dmed), and its nickel (1) and zinc (2) complexes have been prepared and their reactivities with hydrogen peroxide investigated. Complex 1 yields a mixture of sulfenato (RSO-), 4, sulfinato (RSO2-), 3, and sulfonato (RSO3-), 5, products upon addition of H2O2. Products are separable by column chromatography. Stoichiometric addition of H2O2 to 2 yields an inseparable mixture. Excess peroxide addition results in oxygenation of the ligand to the disulfonate, 6, and decomplexation of zinc. Complexes 1, 2, and 3 and compound 6 have been investigated by X-ray crystallography, and their structures are reported. Density functional theory (DFT) calculations of 1 and 2 reveal significant sulfur p character in the HOMO of each complex. However, 1 also shows significant metal d character that is pi-antibonding with respect to the sulfur p orbitals. Complex 2 shows little metal character in the HOMO. Implications of the HOMO with respect to S-centered reactivity and metal ligand distances in S-oxygenated products are provided.
15N chemical shielding parameters are reported for central glycyl residues in crystallographically characterized tripeptides with alpha-helix, beta-strand, polyglycine II (3(1)-helix), and extended structures. Accurate values of the shielding components (2-5 ppm) are determined from MAS and stationary spectra of peptides containing [2-(13)C,(15)N]Gly. Two dipolar couplings, (1)H-(15)N and (13)C(alpha)-(15)N, are used to examine (15)N shielding tensor orientations in the molecular frame and the results indicate that the delta(11), delta(33) plane of the shielding tensor is not coincident with the peptide plane. The observed isotropic shifts, which vary over a range of 13 ppm, depend on hydrogen bonding (direct and indirect) and local conformation. Tensor spans, delta(span) = delta(11) - delta(33), and their deviations from axial symmetry, delta(dev) = delta(22) - delta(33), vary over a larger range and are grouped according to 2 degrees structure. Augmented by previously reported (13)C(alpha) shielding parameters, a prediction scheme for the 2 degrees structure of glycyl residues in proteins based on shielding parameters is proposed.
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A series of iron complexes based on the pentadentate ligand 4,7-bis(2'-methyl-2'-mercaptopropyl)-1-thia-4,7-diazacyclononane), (bmmp-TASN)(2)(-), have been synthesized and characterized as models of iron-containing nitrile hydratase (NHase). The chloro derivative [(bmmp-TASN)Fe(III)Cl].0.5EtOH (1) contains a labile chloride which facilitates synthesis of related complexes via substitution reactions. Complex 1 is high-spin, g = 4.28. Addition of NEt(4)CN with 1 in CH(2)Cl(2) results in the cyanide ligated complex [(bmmp-TASN)Fe(III)CN] x 0.5EtOH (2), which shows a single intense nu(CN) band at 2083 cm(-)(1) in the IR region. Complex 2 is low-spin, g(1) = 2.31, g(2) = 2.16, and g(3) = 1.96. Under basic conditions complex 1 affords a mu-oxo bridged dimeric Fe(III) complex [(bmmp-TASN)Fe(III)](2)O (3), which shows an intense band at 799 cm(-)(1). Complex 3 was recrystallized from CH(2)Cl(2)/hexane solution in the triclinic space group P1, with a = 10.5486(15) A, b = 13.0612(19) A, c = 8.1852(12) A, alpha = 96.923(2) degrees, beta = 112.729(2) degrees, gamma = 81.048(2) degrees, and Z = 1. Density functional theory (DFT) calculations of the previously communicated iron-nitrosyl complex [(bmmp-TASN)Fe(III)(NO)][BPh(4)] (4) (Inorg. Chem. 2002, 41, 1039-1041) reveal that the HOMO region is dominated by Fe-S bonding. Complexes 1-4 display irreversible or quasi-reversible reductions in the cyclic voltammograms. All of the iron complexes and the zinc derivative, (bmmp-TASN)Zn (5), display an irreversible oxidation. Complex 5 was crystallized in the monoclinic space group P2(1)/n with a = 9.5759(6) A, b = 20.9790(13) A, c = 10.7113(7) A, beta = 91.283(1) degrees, and Z = 4.
We report here (13)C(alpha) chemical shielding parameters for central Gly residues in tripeptides adopting alpha-helix, beta-strand, polyglycine II, and fully extended 2 degrees structures. To assess experimental uncertainties in the shielding parameters and the effects of (14)N-(13)C(alpha) or (15)N-(13)C(alpha) dipolar coupling, stationary and magic angle spinning (MAS) spectra with and without (15)N decoupling were obtained from natural abundance and double-labeled samples containing [2-(13)C, (15)N]Gly. We find that accurate (<1 ppm uncertainty) shielding parameters are measured with good sensitivity and resolution in (15)N decoupled 1D or 2D MAS spectra of double-labeled samples. Compared to variations of isotropic shifts with peptide angles, those of (13)C(alpha) shielding anisotropy and asymmetry are greater. Trends relating shielding parameters to the 2 degrees structure are apparent, and the correlation of the experimental values with unscaled ab initio shielding calculations has an rms error of 3 ppm. Using the experimental data and the ab initio shielding values, the empirical trends relating the 2 degrees structure to shielding are extended to the larger range of torsion angles found in proteins.
Cocrystallization of a polyimidazole compound with boric acid results in the formation of the title compound, C(15)H(21)N(7).B(OH)(3), which has an extensive hydrogen-bonding network. The O...N(im) separations (im is imidazole) range from 2.6991 (15) to 2.7914 (14) A, with O-H...N angles ranging from 170.6 (18) to 175 (2) degrees. In addition, symmetry-related boric acid molecules form intermolecular hydrogen bonds, with an O...O distance of 2.7582 (14) A, and symmetry-related imidazole groups form pi-pi stacks, with a centroid-to-centroid separation of 3.533 A.
A novel amide functionalized polyimidazole tripod ligand has been synthesized and used to prepare a mononuclear Fe(III) complex that has been characterized by X-ray crystallography and other physical methods.
The previously reported triphosphino/trithiolato-ruthenium anion, [tris-(2-diphenylphosphinothia-phenolato)ruthenium(II)](-), [Ru(DPPBT)(3)](-), has been isolated as the PPN salt (PPN = bis(triphenylphosphoranylidene) ammonium), 1, from chlorobenzene/ether as light-orange crystalline plates, and the X-ray crystal structure has been determined. In dichloromethane, the cis positioned thiolates are alkylated by solvent yielding the methylene-bridged triphosphino/dithioether/thiolato complex [(bis-(2-diphenylphosphinothiaphenolato)methane)(2-diphenyl-phosphinothiaphenolato)ruthenium(II)]chloride, [Ru((DPPBT)(2)CH(2))(DPPBT)]Cl (2). Dichloromethane solutions of 1 layered with hexanes yield 2 as orange cubes. The ruthenium-sulfur bond distances in the alkylated, thioether product are slightly shorter than in the thiolate precursor. Within 2, the iron-thioether bond distances are comparable to the iron-thiolate distances.
Synthesis of a dibenzothiazole thioether ligand that coordinates Ag(I) yielding an asymmetric dinuclear complex with three unique intermolecular pi-stacking interactions, which influence the first coordination spheres of the silver centers, is reported.
Molecules of 1,4,8,11-tetraazacyclotetradecane-5,7-dione, or cis-dioxocyclam, C(10)H(20)N(4)O(2), lie across mirror planes in space group Cmca; the crystal structure reveals interleaved columns of cis-dioxocyclam molecules along the 2(1) screw axis parallel to the crystallographic b axis. The columns are interconnected in a chain-like arrangement by an amido hydrogen-bonding network (N* * *O = 2.816 A) and an amino hydrogen-bonding network (N* * *N = 3.193 A). The intracolumn spacing is 9.02 A.
The spectroscopic and structural properties of [(bmmp-TASN)FeNO]BPh(4) (1) (bmmp-TASN = 4,7-bis(2'-methyl-2'-mercaptopropyl)-1-thia-4,7-diazacyclononane) have been determined and are compared with the nitric oxide inactivated form of iron-containing nitrile hydratase, NHase(dark). [(bmmp-TASN)FeNO]BPh(4) is prepared from the addition of NO to (bmmp-TASN)FeCl followed by addition of sodium tetraphenylborate. [(bmmp-TASN)FeNO]BPh(4) crystallizes from acetonitrile-methanol solutions upon ether vapor diffusion as dark blue plates in the monoclinic space group P2(1)/c with a = 11.9521(14) A, b = 11.3238(13) A, c = 26.624(3) A, beta = 98.280(2), and Z = 4. The nu(NO) stretching frequency of 1856 cm(-)(1) and the Mössbauer parameters, delta = 0.06 mm/s and DeltaE(q) = 1.75 mm/s, compare favorably with those of NHase(dark). The similarities of the iron-sulfur bond distances to the thiolate, 2.284(2) A and 2.291(2) A, versus thioether, 2.285(2) A, are attributed to the low-spin configuration of the iron. The relationship between this structural observation and the spectroscopic properties of the complex are discussed.