Biomedical subjects

Martin Elsner

Publications and source records attributed to Martin Elsner.

9 recordsLinked to original sources

PubMed2006

Freezing to preserve groundwater samples and improve headspace quantification limits of water-soluble organic contaminants for carbon isotope analysis.

Few systematic investigations have addressed the use of freezing for applications in analytical chemistry. Here, we tested its potential to preserve groundwater samples and to improve headspace quantification limits for compound-specific isotope analysis. Analysis of compound concentrations, as well as stable carbon isotope ratios, confirmed that trichloroethene was preserved in frozen suspensions of nanoscale zerovalent iron. In contrast, storage at 7 degrees C was ineffective, and complete degradation of TCE occurred in 4 weeks. Hence, freezing may stop even abiotic chemical reactions that would not be prevented by cooling or traditional preservation agents. In the absence of iron, we found that headspace concentrations of 14 organic contaminants were considerably higher over frozen solutions than at 25 degrees C, likely reflecting a freezing-out effect governed by Raoult's law. The observed enhancement depended on the salinity of the samples and was strongest for water-soluble, volatile compounds (values in brackets indicate the minimum observed effect out of six replicates): tert-butyl alcohol (TBA, 35-fold), methyl tert-butyl ether (MTBE, 14-fold), 1,2-dichloroethane (10-fold), or benzene (7-fold). In contrast, little enhancement was observed for less water-soluble compounds, such as tetrachloroethene. Although standard deviations of the measurements were too high for the method to be used for quantitative analysis of total compound concentrations, since we found that freezing introduces no measurable carbon isotope effect for TBA, MTBE, 1,2-dichloroethane, and benzene, the method is an effective way of increasing the sensitivity of compound-specific isotope analysis, particularly of water-soluble organic contaminants.

Journal Article↗

PubMed2005

A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants.

Measuring stable isotope fractionation of carbon, hydrogen, and other elements by Compound Specific Isotope Analysis (CSIA) is a new, innovative approach to assess organic pollutant degradation in the environment. Central to this concept is the Rayleigh equation which relates degradation-induced decreases in concentrations directly to concomitant changes in bulk (= average over the whole compound) isotope ratios. The extent of in situ transformation may therefore be inferred from measured isotope ratios in field samples, provided that an appropriate enrichment factor (epsilonbulk) is known. This epsilonbulk value, however, is usually only valid for a specific compound and for specific degradation conditions. Therefore, a direct comparison of epsilonbulk values for different compounds and for different types of reactions has in general not been feasible. In addition, it is often uncertain how robust and reproducible epsilonbulk values are and how confidently they can be used to quantify contaminant degradation in the field. To improve this situation and to achieve a more in-depth understanding, this critical review aims to relate fundamental insight about kinetic isotope effects (KIE) found in the physico(bio)chemical literature to apparent kinetic isotope effects (AKIE) derived from epsilonbulk values reported in environmentally oriented studies. Starting from basic rate laws, a quite general derivation of the Rayleigh equation is given, resulting in a novel set of simple equations that take into account the effects of (1) nonreacting positions and (2) intramolecular competition and that lead to position-specific AKIE values rather than bulk enrichment factors. Reevaluation of existing epsilonbulk literature values result in consistent ranges of AKIE values that generally are in good agreement with previously published data in the (bio)-chemical literature and are typical of certain degradation reactions (subscripts C and H indicate values for carbon and hydrogen): AKIEc = 1.01-1.03 and AKIEH = 2-23 for oxidation of C-H bonds; AKIEc = 1.03-1.07 for SN2-reactions; AKIEc = 1.02-1.03 for reductive cleavage of C-Cl bonds; AKIEc = 1.00-1.01 for C=C bond epoxidation; AKIEc = 1.02-1.03 for C=C bond oxidation by permanganate. Hence, the evaluation scheme presented bridges a gap between basic and environmental (bio)chemistry and provides insight into factors that control the magnitude of bulk isotope fractionation factors. It also serves as a basis to identify degradation pathways using isotope data. It is shown how such an analysis may be even possible in complex field situations and/or in cases where AKIE values are smaller than intrinsic KIE values, provided that isotope fractionation is measured for two elements simultaneously ("two-dimensional isotope analysis"). Finally, the procedure is used (1) to point outthe possibility of estimating approximate epsilonbulk values for new compounds and (2) to discuss the moderate, but non-negligible variability that may quite generally be associated with epsilonbulk values. Future research is suggested to better understand and take into account the various factors that may cause such variability.

Biochemical Phenomena↗

PubMed2005

Carbon isotope fractionation in the reductive dehalogenation of carbon tetrachloride at iron (hydr)oxide and iron sulfide minerals.

Compound-specific isotope analysis (CSIA) is used increasingly in contaminant hydrology in the attempt to assess the nature as well as the extent of in situ transformation reactions. Potentially, variations of stable isotope ratios along a contaminant plume may be used to quantify in situ degradation. In the present study, the abiotic dehalogenation of CCl4 by Fe(II) present at the surface of different iron minerals has been characterized in terms of the reaction rates and carbon isotopic fractionation (delta13C) of carbon tetrachloride (CCl4) as well as the yields and isotopic signatures of chloroform (CHCl3), one of the main transformation products. The abiotic reductive dehalogenation of CCl4 was associated with substantial carbon isotopic enrichment effects. The observed enrichment factors, e, correlated neither with the surface-normalized reaction rate constants nor with the type of products formed but fell into two distinctly different ranges for the two principal groups of minerals studied. With iron (hydr)oxide minerals (goethite, hematite, lepidocrocite, and magnetite) and with siderite, the e-values for CCl4 dehalogenation were remarkably similar (-29 +/- 3 per thousand). Because this value matches well with the theoretical estimates for the cleavage of an aliphatic C-Cl bond, we suggest that dissociative electron transfer to CCl4 controls the reaction rates for this group of iron minerals. Conversely, CCl4 transformation by different preparations of the iron sulfide mackinawite was accompanied by a significantly lower carbon istotopic fractionation (e = -15.9 +/- 0.3 per thousand), possibly due to the presence of nonfractionating rate-determining steps or a significantly different transition state structure of the reaction. Isotopically sensitive branching of the reaction pathways (i.e., the effect of different product distributions on isotope fractionation of CCl4) did not play a significant role in our systems. The extensive data set presented in this study opens new perspectives toward an improved understanding of the factors that determine reaction mechanisms and isotopic fractionation of dehalogenation reactions by Fe(II) at iron containing minerals.

Carbon Isotopes↗

PubMed2005

Carbon isotopic fractionation during aerobic vinyl chloride degradation.

Vinyl chloride (VC) is a carcinogenic contaminant commonly found in groundwater. Much research has focused on anaerobic reductive dechlorination of VC, and recently on aerobic VC degradation. In this study, the stable carbon isotope enrichment factor associated with aerobic VC assimilation was determined for Mycobacterium sp. strains JS60, JS61, and JS617 and Nocardioides sp. strain JS614. The enrichment factors ranged from -8.2+/-0.1 to -7.0+/-0.3 % and did not change as a function of biomass concentration. The measured enrichment factors for aerobic VC degradation were smaller than those reported for anaerobic VC degradation. Enrichment factors can also be expressed in terms of kinetic isotope effects (KIEs), 12k/13k, which result from the difference in reaction rates of bonds containing light and heavy isotopes. The KIEs for aerobic VC degradation (1.01+/-0.001) were smaller than those for anaerobic VC degradation (1.03+/-0.007). From the perspective of bond breakage during a chemical reaction, the larger KIE associated with anaerobic VC degradation as compared to aerobic VC degradation agrees with KIE theory. This theory predicts that larger fractionations can be expected in reactions where heavier atoms are involved (i.e., C-Cl bond for anaerobic versus C=C for aerobic) and in reactions involving large changes in vibrational frequencies of the molecule between its ground state and transition state (i.e., C-Cl cleavage versus C=C epoxidation). The significant fractionation observed during aerobic VC degradation suggests that stable carbon isotope measurements may be used as a tool to distinguish between biodegraded and nonbiodegraded VC.

Bacteria, Aerobic↗

PubMed2005

New evaluation scheme for two-dimensional isotope analysis to decipher biodegradation processes: application to groundwater contamination by MTBE.

Compound-specific analysis of stable carbon and hydrogen isotopes was used to assess the fate of the gasoline additive methyl tert-butyl ether (MTBE) and its major degradation product tert-butyl alcohol (TBA) in a groundwater plume at an industrial disposal site. We present a novel approach to evaluate two-dimensional compound-specific isotope data with the potential to identify reaction mechanisms and to quantify the extent of biodegradation at complex field sites. Due to the widespread contaminant plume, multiple MTBE sources, the presence of numerous other organic pollutants, and the complex biogeochemical and hydrological regime atthe site, a traditional mass balance approach was not applicable. The isotopic composition of MTBE steadily changed from the source regions along the major contaminant plume (-26.4% to +40.0% (carbon); -73.1% to +60.3% (hydrogen)) indicating substantial biodegradation. Constant carbon isotopic signatures of TBA suggest the absence of TBA degradation at the site. Published carbon and hydrogen isotope fractionation data for biodegradation of MTBE under oxic and anoxic conditions, respectively, were examined and used to determine both the nature and the extent of in-situ biodegradation along the plume(s). The coupled evaluation of two-dimensional compound-specific isotope data explained both carbon and hydrogen fractionation data in a consistent way and indicate anaerobic biodegradation of MTBE along the entire plume. A novel scheme to reevaluate empiric isotopic enrichment factors (epsilon) in terms of theoretically based intrinsic carbon (12k/13k) and hydrogen (1k/2k) kinetic isotope effects (KIE) is presented. Carbon and hydrogen KIE values, calculated for different potential reaction mechanisms, imply that anaerobic biodegradation of MTBE follows a SN2-type reaction mechanism. Furthermore, our data suggest that additional removal process(es) such as evaporation contributed to the overall MTBE removal along the plume, a phenomenon that might be significant also for other field sites at tropic or subtropic climates with elevated groundwater temperatures (25 degrees C).

Bacteria, Anaerobic↗

PubMed2004

Pathway dependent isotopic fractionation during aerobic biodegradation of 1,2-dichloroethane.

1,2-Dichloroethane (1,2-OCA) is a widespread groundwater contaminant known to be biodegradable under aerobic conditions via enzymatic oxidation or hydrolytic dehalogenation reactions. Current literature reports that stable carbon isotope fractionation of 1,2-DCA during aerobic biodegradation is large and reproducible (-27 to -33/1000). In this study, a significant variation in the magnitude of stable carbon isotope fractionation during aerobic biodegradation was observed. Biodegradation in experiments involving microcosms, enrichment cultures, and pure microbial cultures produced a consistent bimodal distribution of enrichment factors (epsilon) with one mean epsilon centered on -3.9 +/- 0.6/1000 and the other on -29.2 +/- 1.9/1000. Reevaluation of epsilon in terms of kinetic isotope effects 12k/13k gave values of 12k/13k = 1.01 and 1.06, which are typical of oxidation and hydrolytic dehalogenation (S(N)2) reactions, respectively. The bimodal distribution is therefore consistent with the microbial degradation of 1,2-DCA by two separate enzymatic pathways. This interpretation is further supported in this study by experiments with pure strains of Xanthobacter autotrophicus GJ10, Ancylobacter aquaticus AD20, and Pseudomonas sp. Strain DCA1 for which the enzymatic degradation pathways are well-known. A small fractionation of -3.0/1000 was measured for 1,2-DCA degradation by Pseudomonas sp. Strain DCA1 (monooxygenase enzyme), while degradation by the hydrolytic dehalogenase enzyme by the other two pure strains was characterized by fractionation of -32.3/1000.

Biodegradation, Environmental↗

PubMed2004

Mechanisms and products of surface-mediated reductive dehalogenation of carbon tetrachloride by Fe(II) on goethite.

Natural attenuation processes of chlorinated solvents in soils and groundwaters are increasingly considered as options to manage contaminated sites. Under anoxic conditions, reactions with ferrous iron sorbed at iron(hyro)xides may dominate the overall transformation of carbon tetrachloride (CCl4) and other chlorinated aliphatic hydrocarbons. We investigated mechanisms and product formation of CCl4 reduction by Fe(II) sorbed to goethite, which may lead to completely dehalogenated products or to chloroform (CHCl3), a toxic product which is fairly persistent under anoxic conditions. A simultaneous transfer of two electrons and cleavage of two C-Cl bonds of CCl4 would completely circumvent chloroform production. To distinguish between initial one- or two-bond cleavage, 13C-isotope fractionation of CCl4 was studied for reactions with Fe(II)/ goethite (isotopic enrichment factor epsilon = -26.5% percent per thousand) and with model systems for one C-Cl bond cleavage and either single-electron transfer (Fe(II) porphyrin, epsilon = -26.1 percent per thousand) or partial two-electron transfer (polysulfide, epsilon = -22.2 percent per thousand). These epsilon values differ significantlyfrom calculations for simultaneous cleavage of two C-Cl bonds (epsilon approximately equal to -50 percent per thousand), indicating that only one C-Cl bond is broken in the critical first step of the reaction. At pH 7, reduction of CCl4 by Fe(II)/ goethite produced approximately 33% CHCl3, 20% carbon monoxide (CO), and up to 40% formate (HCOO-). Addition of 2-propanol-d8 resulted in 33% CDCl3 and only 4% CO, indicating that both products were generated from trichloromethyl radicals (*CCl3), chloroform by reaction with hydrogen radical donors and CO by an alternative pathway likely to involve surface-bound intermediates. Hydrolysis of CO to HCOO-was surface-catalyzed by goethite butwastoo slow to account for the measured formate concentrations. Chloroform yields slightly increased with pH at constant Fe(II) sorption density, suggesting that pH-dependent surface processes direct product branching ratios. Surface-stabilized intermediates may thus facilitate abiotic mineralization of CCl4, whereas the presence of H radical donors, such as natural organic matter, enhances formation of toxic CHCl3.

Carbon Tetrachloride↗

PubMed2004

Reactivity of Fe(II)-bearing minerals toward reductive transformation of organic contaminants.

Fe(II) present at surfaces of iron-containing minerals can play a significant role in the overall attenuation of reducible contaminants in the subsurface. As the chemical environment, i.e., the type and arrangement of ligands, strongly affects the redox potential of Fe(II), the presence of various mineral sorbents is expected to modulate the reactivity of surficial Fe(II)-species in aqueous systems. In a comparative study we evaluated the reactivity of ferrous iron in aqueous suspensions of siderite (FeCO3), nontronite (ferruginous smectite SWa-1), hematite (alpha-Fe2O3), lepidocrocite (gamma-FeOOH), goethite (alpha-FeOOH), magnetite (Fe3O4), sulfate green rust (Fe(II)4Fe(III)2(OH)12SO4 x 4H2O), pyrite (FeS2), and mackinawite (FeS) under similar conditions (pH 7.2, 25 m2 mineral/L, 1 mM Fe(II)aq, O2 (aq) < 0.1 g/L). Surface-area-normalized pseudo first-order rate constants are reported for the reduction of hexachloroethane and 4-chloronitrobenzene representing two classes of environmentally relevant transformation reactions of pollutants, i.e., dehalogenation and nitroaryl reduction. The reactivities of the different Fe(II) mineral systems varied greatly and systematically both within and between the two data sets obtained with the two probe compounds. As a general trend, surface-area-normalized reaction rates increased in the order Fe(II) + siderite < Fe(II) + iron oxides < Fe(II) + iron sulfides. 4-Chloronitrobenzene was transformed by mineral-bound Fe(II) much more rapidly than hexachloroethane, except for suspensions of hematite, pyrite, and nontronite. The results demonstrate that abiotic reactions with surface-bound Fe(II) may affect or even dominate the long-term behavior of reducible pollutants in the subsurface, particularly in the presence of Fe(III) bearing minerals. As such reactions can be dominated by specific interactions of the oxidant with the surface, care must be taken in extrapolating reactivity data of surface-bound Fe(II) between different compound classes.

Ferrous Compounds↗

PubMed2003

Compound-specific stable isotope analysis of organic contaminants in natural environments: a critical review of the state of the art, prospects, and future challenges.

Compound-specific stable isotope analysis (CSIA) using gas chromatography-isotope ratio mass spectrometry (GC/IRMS) has developed into a mature analytical method in many application areas over the last decade. This is in particular true for carbon isotope analysis, whereas measurements of the other elements amenable to CSIA (hydrogen, nitrogen, oxygen) are much less routine. In environmental sciences, successful applications to date include (i) the allocation of contaminant sources on a local, regional, and global scale, (ii) the identification and quantification of (bio)transformation reactions on scales ranging from batch experiments to contaminated field sites, and (iii) the characterization of elementary reaction mechanisms that govern product formation. These three application areas are discussed in detail. The investigated spectrum of compounds comprises mainly n-alkanes, monoaromatics such as benzene and toluene, methyl tert-butyl ether (MTBE), polycyclic aromatic hydrocarbons (PAHs), and chlorinated hydrocarbons such as tetrachloromethane, trichloroethylene, and polychlorinated biphenyls (PCBs). Future research directions are primarily set by the state of the art in analytical instrumentation and method development. Approaches to utilize HPLC separation in CSIA, the enhancement of sensitivity of CSIA to allow field investigations in the microg L(-1) range, and the development of methods for CSIA of other elements are reviewed. Furthermore, an alternative scheme to evaluate isotope data is outlined that would enable estimates of position-specific kinetic isotope effects and, thus, allow one to extract mechanistic chemical and biochemical information.

Chromatography, High Pressure Liquid↗