Biomedical subjects

Martin H Schroth

Publications and source records attributed to Martin H Schroth.

12 recordsLinked to original sources

PubMed2006

Determination of NAPL-water interfacial areas in well-characterized porous media.

The nonaqueous-phase liquid (NAPL)-water interfacial area is an important parameter which influences the rate of NAPL dissolution in porous media. The aim of this study was to generate a set of baseline data for specific interfacial area for a two-phase-entrapped NAPL-water system in well-characterized porous media and subsequently use these data to evaluate two current theoretical models. The first model tested distributes entrapped NAPL over the pore classes based on Land's algorithm and assumes the resulting blobs to be spherical. The other model is thermodynamically based, assuming that reversible work done on the system results in an increase in interfacial area, such that the area between drainage and imbibition retention curves can be related to the interfacial area. Interfacial tracer tests (IFTT) were used to measure specific entrapped NAPL (hexadecane)-water interfacial areas in columns packed with four grades (12/20, 20/30, 30/40, 40/50) of silica sand. By use of the anionic surfactant dihexylsulfosuccinate (Aerosol MA80), IFTT gave specific interfacial areas between 58 cm(-1) for the finest sand and 16 cm(-1) for the coarsest, compared to values of between 33 and 7 cm(-1) for the first model and between 19 and 5 cm(-1) for the thermodynamic model. Results from the literature suggest that nonspherical blobs shapes occur relatively frequently; hence it is reasonable to suggest that the assumption of spherical NAPL blobs may explain the underprediction by the first model. The thermodynamic model underestimates the interfacial area because it assumes that entrapment occurs only within the largest pores. A modified version of the latter model, allowing entrapment across all pore classes, yielded values between 58 and 13 cm(-1). Of the models tested the modified thermodynamic model best predicts the interfacial area.

Forecasting↗

PubMed2005

Field-scale isotopic labeling of phospholipid fatty acids from acetate-degrading sulfate-reducing bacteria.

Isotopic labeling of biomarker molecules is a technique applied to link microbial community structure with activity. Previously, we successfully labeled phospholipid fatty acids (PLFA) of suspended nitrate-reducing bacteria in an aquifer. However, the application of the method to low energy-yielding processes such as sulfate reduction, and extension of the analysis to attached communities remained to be studied. To test the feasibility of the latter application, an anoxic test solution of 500 l of groundwater with addition of 0.5 mM Br- as a conservative tracer, 1.1 mM SO4(2-), and 2.0 mM [2-13C]acetate was injected in the transition zone of a petroleum hydrocarbon-contaminated aquifer where sulfate-reducing and methanogenic conditions prevailed. Thousand liters of test solution/groundwater mixture were extracted in a stepwise fashion after 2-46 h incubation. Computed apparent first-order rate coefficients were 0.31+/-0.04 day(-1) for acetate and 0.34+/-0.05 day(-1) for SO4(2-) consumption. The delta13C increased from -71.03 per thousand to +3352.50 per thousand in CH4 and from -16.15 per thousand to +32.13 per thousand in dissolved inorganic carbon (DIC). A mass balance suggested that 43% of the acetate-derived (13)C appeared in DIC and 57% appeared in CH4. Thus, acetate oxidation coupled to sulfate reduction and acetoclastic methanogenesis occurred simultaneously. The delta13C of PLFA increased on average by 27 per thousand in groundwater samples and 4 per thousand in sediment samples. Hence, both suspended and attached communities actively degraded acetate. The PLFA labeling patterns and fluorescent in situ hybridization (FISH) analyses of sediment and groundwater samples suggested that the main sulfate-reducing bacteria degrading the acetate were Desulfotomaculum acetoxidans and Desulfobacter sp. in groundwater, and D. acetoxidans in sediment.

Acetates↗

PubMed2005

New field method: gas push-pull test for the in-situ quantification of microbial activities in the vadose zone.

Quantitative information on microbial processes in the field is important. Here we propose a new field method, the "gas push-pull test" (GPPT) for the in-situ quantification of microbial activities in the vadose zone. To evaluate the new method, we studied microbial methane oxidation above an anaerobic, petroleum-contaminated aquifer. A GPPT consists of the injection of a gas mixture of reactants (e.g., methane, oxygen) and nonreactive tracer gases (e.g., neon, argon) into the vadose zone and the subsequent extraction of the injection gas mixture together with soil air from the same location. Rate constants of gas conversion are calculated from breakthrough curves of extracted reactants and tracers. In agreement with expectations from previously measured gas profiles, we determined first-order rate constants of 0.68 h(-1) at 1.1 m below soil surface and 2.19 h(-1) at 2.7 m, close to the groundwater table. Co-injection of a specific inhibitor (acetylene) for methanotrophs showed that the observed methane consumption was microbially mediated. This was confirmed by increases of stable carbon isotope ratios in methane by up to 42.6 %. In the future, GPPTs should provide useful quantitative information on a range of microbial processes in the vadose zone.

Air Movements↗

PubMed2005

Activity and diversity of methanogens in a petroleum hydrocarbon-contaminated aquifer.

Methanogenic activity was investigated in a petroleum hydrocarbon-contaminated aquifer by using a series of four push-pull tests with acetate, formate, H(2) plus CO(2), or methanol to target different groups of methanogenic Archaea. Furthermore, the community composition of methanogens in water and aquifer material was explored by molecular analyses, i.e., fluorescence in situ hybridization (FISH), denaturing gradient gel electrophoresis (DGGE) of 16S rRNA genes amplified with the Archaea-specific primer set ARCH915 and UNI-b-rev, and sequencing of DNA from dominant DGGE bands. Molecular analyses were subsequently compared with push-pull test data. Methane was produced in all tests except for a separate test where 2-bromoethanesulfonate, a specific inhibitor of methanogens, was added. Substrate consumption rates were 0.11 mM day(-1) for methanol, 0.38 mM day(-1) for acetate, 0.90 mM day(-1) for H(2), and 1.85 mM day(-1) for formate. Substrate consumption and CH(4) production during all tests suggested that at least three different physiologic types of methanogens were present: H(2) plus CO(2) or formate, acetate, and methanol utilizers. The presence of 15 to 20 bands in DGGE profiles indicated a diverse archaeal population. High H(2) and formate consumption rates agreed with a high diversity of methanogenic Archaea consuming these substrates (16S rRNA gene sequences related to several members of the Methanomicrobiaceae) and the detection of Methanomicrobiaceae by using FISH (1.4% of total DAPI [4',6-diamidino-2-phenylindole]-stained microorganisms in one water sample; probe MG1200). Considerable acetate consumption agreed with the presence of sequences related to the obligate acetate degrader Methanosaeata concilii and the detection of this species by FISH (5 to 22% of total microorganisms; probe Rotcl1). The results suggest that both aceticlastic and CO(2)-type substrate-consuming methanogens are likely involved in the terminal step of hydrocarbon degradation, while methanogenesis from methanol plays a minor role. DGGE profiles further indicate similar archaeal community compositions in water and aquifer material. The combination of hydrogeological and molecular methods employed in this study provide improved information on the community and the potential activity of methanogens in a petroleum hydrocarbon-contaminated aquifer.

Archaea↗

PubMed2004

Modeling of a microbial growth experiment with bioclogging in a two-dimensional saturated porous media flow field.

A model was developed simulating reactive transport in groundwater including bioclogging. Results from a bioclogging experiment in a flow cell with a two-dimensional flow field were used as a data base to verify the simulation results of the model. Simulations were performed using three different hydraulic conductivity vs. porosity relations published in literature; two relations derived from pore network simulations assuming the biomass to grow in discrete colonies and as a biofilm, respectively, and a third relation, which did not include pore connectivity in more than one dimension. Best agreement with the experimental data was achieved using a hydraulic conductivity vs. porosity relation derived from pore network simulation assuming the biomass to grow in colonies. The relation derived from pore network simulations assuming biomass to grow as a biofilm was unable to reproduce the experimental data when realistic parameter values were employed. With the third relation the clogging ability of the biomass was strongly underestimated. These findings indicate that the porous medium needs to be treated as a multi-dimensional medium already on the pore scale, and that biomass growth different than in a biofilm must be considered to get an appropriate description of bioclogging.

Biofilms↗

PubMed2004

Methods to assess the amenability of petroleum hydrocarbons to bioremediation.

Bioremediation has achieved acceptance as a cost-effective technique for the remediation of soils and groundwater contaminated with petroleum hydrocarbons (PHC). A range of laboratory techniques to assess the biodegradability and bioavailability of PHCs are presented. Biodegradability and bioavailability are important determinants of the bioremediation performance of PHCs. Novel methods for the assessment of the bioavailability of PHC components are described. The techniques are demonstrated for a hydraulic fluid and a spindle oil from a contaminated site. Biodegradation is measured by oxygen consumption and carbon dioxide production. Bioavailability of the PHCs is estimated based on the PHC-water partitioning of tracer compounds and a novel analysis of gas chromatograms based on Raoult's law. The PHCs tested were only partially biodegradable (< 25% in 78 d) due to the low solubility and likely recalcitrance of some of their components. The combination of techniques outlined is expected to be of use in assessing the likely bioremediation performance of PHCs for which published data are scarce or inadequate.

Biodegradation, Environmental↗

PubMed2003

"Forced mass balance" technique for estimating in situ transformation rates of sorbing solutes in groundwater.

A method for estimating in situ transformation rates of sorbing solutes in groundwater is presented. The method utilizes a novel data processing technique called "forced mass balance" (FMB) to remove the effects of transport processes from reactant and product concentrations measured during single-well, "push-pull" tests. The effectiveness of the FMB technique was evaluated by quantifying errors in derived rates obtained by applying FMB to simulated push-pull test data generated by a numerical model. Results from simulated tests indicated that errors in derived rates increase as the test duration, groundwater velocity, and ratio of reactant to product retardation factors increase. In addition, errors in derived rates increase as the reaction rate constant and aquifer dispersivity decrease. As a demonstration, the FMB technique was used to derive an in situ reductive dechlorination rate for trichlorofluoroethene (TCFE) using data from a field push-pull test. Error analyses indicated that the in situ TCFE transformation rate was underestimated by a factor of 1.1-2. Thus, the FMB technique makes it possible to estimate in situ transformation rates of sorbing solutes and when FMB is coupled with computer modeling to estimate errors in derived in situ rates.

Environmental Pollution↗

PubMed2002

Single-well "push-pull" partitioning tracer test for NAPL detection in the subsurface.

Previous environmental applications of partitioning tracer tests to detect and quantify nonaqueous phase liquid (NAPL) contamination in the subsurface have been limited to well-to-well tests. However, theory and numerical modeling suggests that single-well injection-extraction ("push-pull") partitioning tracer tests can also potentially detect and quantify NAPL contamination. In this type of test, retardation factors for injected partitioning tracers are estimated from the increase in apparent dispersion observed in extraction-phase breakthrough curves in the presence of NAPL. A series of laboratory push-pull tests was conducted in physical aquifer models (PAMs) packed with natural aquifer sediment prepared with and without the presence of trichloroethene (TCE) NAPL. Field tests were conducted in an aquifer contaminated with petroleum hydrocarbon NAPL. Injected test solutions contained a suite of partitioning and conservative (nonpartitioning) alcohol tracers. Laboratory push-pull partitioning tracer tests were able to detect and quantify sorption of partitioning tracers to aquifer sediment (in the absence of NAPL) and to detect NAPL when it was present. NAPL saturations computed from estimated retardation factors bracketed those computed from known volumes of emplaced NAPL in the sediment pack. However, numerical modeling with assumed homogeneous NAPL distribution and linear equilibrium partitioning of tracers between aqueous and NAPL phases was unable to reproduce all features of observed breakthrough curves. Excavation of the sediment pack after all tests indicated that a portion of the emplaced NAPL had sunk to the bottom of the PAM invalidating the modeling assumption of homogeneous NAPL distribution. Moreover, the apparent dispersion in extraction-phase breakthrough curves decreased when the injection-extraction pumping rate was decreased, suggesting that mass transfer limitations existed during laboratory tests. Field push-pull partitioning tracer tests were able to detect NAPL in a portion of the aquifer known to contain NAPL; computed NAPL saturations were comparble to those obtained from sediment coring and the results of a partitioning interwell tracer test conducted in the same location. This study clearly demonstrates that the single-well partitioning tracer test can detect NAPL under both laboratory and field conditions. However, additional research is needed to verify the ability of the test to quantify NAPL saturations.

Chemistry Techniques, Analytical↗

PubMed2002

Interaction between water flow and spatial distribution of microbial growth in a two-dimensional flow field in saturated porous media.

Bacterial growth and its interaction with water flow was investigated in a two-dimensional flow field in a saturated porous medium. A flow cell (56 x 44 x 1 cm) was filled with glass beads and operated under a continuous flow of a mineral medium containing nitrate as electron acceptor. A glucose solution was injected through an injection port, simulating a point source contamination. Visible light transmission was used to observe the distribution of the growing biomass and water flow during the experiment. At the end of the experiment (on day 31), porous medium samples were destructively collected and analyzed for abundance of total and active bacterial cells, bacterial cell volume and concentration of polysaccharides and proteins. Microbial growth was observed in two stripes along the length of the flow cell, starting at the glucose injection port, where highest biomass concentrations were obtained. The spatial distribution of biomass indicated that microbial activity was limited by transverse mixing between glucose and nitrate media, as only in the mixing zone between the media high biological activities were achieved. The ability of the biomass to change the flow pattern in the flow cell was observed, indicating that the biomass was locally reducing the hydraulic conductivity of the porous medium. This bioclogging effect became evident when the injection of the glucose solution was turned off and water flow still bypassed the area around the glucose injection port, preserving the flow pattern as it was during the injection of the glucose solution. As flow bypass was possible in this system, the average hydraulic properties of the flow cell were not affected by the produced biomass. Even in the vicinity of the injection port, the total volume of the bacterial cells remained below 0.01% of the pore space and was unlikely to be responsible for the bioclogging. However, the bacteria produced large amounts of extracellular polymeric substances (EPS), which likely caused the observed bioclogging effects.

Benzenesulfonates↗

PubMed2002

Activity and diversity of sulfate-reducing bacteria in a petroleum hydrocarbon-contaminated aquifer.

Microbial sulfate reduction is an important metabolic activity in petroleum hydrocarbon (PHC)-contaminated aquifers. We quantified carbon source-enhanced microbial SO(4)(2-) reduction in a PHC-contaminated aquifer by using single-well push-pull tests and related the consumption of sulfate and added carbon sources to the presence of certain genera of sulfate-reducing bacteria (SRB). We also used molecular methods to assess suspended SRB diversity. In four consecutive tests, we injected anoxic test solutions (1,000 liters) containing bromide as a conservative tracer, sulfate, and either propionate, butyrate, lactate, or acetate as reactants into an existing monitoring well. After an initial incubation period, 1,000 liters of test solution-groundwater mixture was extracted from the same well. Average total test duration was 71 h. We measured concentrations of bromide, sulfate, and carbon sources in native groundwater as well as in injection and extraction phase samples and characterized the SRB population by using fluorescence in situ hybridization (FISH) and denaturing gradient gel electrophoresis (DGGE). Enhanced sulfate reduction concomitant with carbon source degradation was observed in all tests. Computed first-order rate coefficients ranged from 0.19 to 0.32 day(-1) for sulfate reduction and from 0.13 to 0.60 day(-1) for carbon source degradation. Sulfur isotope fractionation in unconsumed sulfate indicated that sulfate reduction was microbially mediated. Enhancement of sulfate reduction due to carbon source additions in all tests and variability of rate coefficients suggested the presence of specific SRB genera and a high diversity of SRB. We confirmed this by using FISH and DGGE. A large fraction of suspended bacteria hybridized with SRB-targeting probes SRB385 plus SRB385-Db (11 to 24% of total cells). FISH results showed that the activity of these bacteria was enhanced by addition of sulfate and carbon sources during push-pull tests. However, DGGE profiles indicated that the bacterial community structure of the dominant species did not change during the tests. Thus, the combination of push-pull tests with molecular methods provided valuable insights into microbial processes, activities, and diversity in the sulfate-reducing zone of a PHC-contaminated aquifer.

Colony Count, Microbial↗

PubMedDate not supplied

Approximate solution for solute transport during spherical-flow push-pull tests.

An approximate analytical solution to the advection-dispersion equation was derived to describe solute transport during spherical-flow conditions in single-well push-pull tests. The spherical-flow case may be applicable to aquifer tests conducted in packed intervals or partially penetrating wells. Using results of two-dimensional numerical simulations, we briefly illustrate the applicability of the derived spherical-flow solution and provide a comparison with its cylindrical-flow counterpart. Good agreement between simulated extraction-phase breakthrough curves and the spherical-flow solution was found when the length of the injection/extraction region was small compared to both aquifer thickness and maximum solute frontal position at the end of the injection phase. On the other hand, discrepancies between simulated breakthrough curves and the spherical-flow solution increased with increasing anisotropy in hydraulic conductivities. Several inherent limitations embedded in its derivation such as assumptions of isotropy and homogeneity warrant the cautious use of the spherical-flow solution.

Geological Phenomena↗

PubMedDate not supplied

Models to determine first-order rate coefficients from single-well push-pull tests.

Push-pull tests (PPTs) have been successfully employed to quantify various microbially mediated processes in the subsurface. Current models for determining first-order rate coefficients (k) from PPTs assume complete and instantaneous mixing of injected test solution in the portion of the aquifer investigated by the test, i.e., the system is treated like a well-mixed reactor. Here we present two alternative models to estimate k that are based on different mixing assumptions, i.e., plug-flow and variably mixed reactor models. Rate coefficients estimated by the models were compared using a sensitivity analysis and numerical simulations of PPTs. Results indicated that all models yielded reasonably accurate k estimates (errors < 13%), while best accuracy (errors < 1%) was obtained using the variably mixed reactor model. The well-mixed reactor model generally overestimated true (simulation input) k values, whereas true k values were consistently underestimated by the plug-flow reactor model. However, estimates of k obtained with the latter models bracketed true k values in all cases. As the variably mixed reactor model is more difficult to apply, we suggest using the well-mixed and plug-flow reactor models to obtain intervals for k estimates that will encompass true k values with high certainty. In an example application, we used all models to reanalyze a published PPT data set to obtain k estimates for nitrate consumption in a petroleum-contaminated aquifer. Similar results were obtained for all three models (relative differences < 10% between k estimates), indicating that all three models are robust tools for estimating k values from PPT experimental data.

Biodegradation, Environmental↗