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Biomedical subjects

Michael A Khanin

Publications and source records attributed to Michael A Khanin.

2 recordsLinked to original sources

Optimality principle and determination of kinetic constants for biochemical reactions.

An optimality principle is applied to determine kinetic constants for biochemical (enzymatic and second-order) reactions involved in a physiological system, a minimum protein consumption criterion being adopted. A direct optimization problem is to determine optimal zymogen concentrations. An 'inverse' optimization problem is also considered; this problem is to determine the kinetic constants for the biochemical reactions involved in a physiological system such that the optimal and observed zymogen and procofactor concentrations coincide. In solving an 'inverse' optimization problem we assume that the scheme of biochemical reactions and zymogen and procofactor concentrations are known. Good agreement is observed between the model results for the extrinsic blood coagulation pathway and relevant biochemical data. The proposed method is also applicable to determining kinetic constants for other physiological biochemical-reaction systems.

Blood Coagulation↗

Apoptosis: an optimization approach.

The present study examined the levels of procaspases (zymogens of the main apoptosis enzymes, caspases) that are predicted based on application of the optimization principle. Optimization models have previously been successfully developed for many other physiological systems (e.g., circulation, oxygen transport system, fibrinolysis, and blood coagulation) but have not previously been applied to apoptotic biochemical pathways. Our model assumed that apoptotic pathways are designed to minimize protein consumption. Procaspase concentrations were predicted based on this assumption, along with known schemes of apoptosis reactions and kinetic constants for procaspase activation and target cleavage. Good agreement between the model predictions and actual procaspase levels was observed.

Apoptosis↗