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Michael B Hall

Publications and source records attributed to Michael B Hall.

31 records · Page 2Linked to original sources
PubMed2004

A theoretical investigation of ruthenium-catalyzed alkene hydrosilation: evidence to support an exciting new mechanistic proposal.

The mechanism of ethylene hydrosilation catalyzed by the ruthenium silylene cation [Cp*(P(i-Pr)3)Ru(H)2(SiH2)-OEt2]+ has been investigated with B3LYP density functional theory. Calculations using the model cation [Cp(PH3)Ru(H)2(SiH2)-OMe2]+ indicate that the most favorable catalytic cycle is the new mechanism proposed by Glaser and Tilley that involves ethylene insertion into a silicon-hydrogen bond remote from the ruthenium center. All other pathways, including those based on Chalk-Harrod and modified Chalk-Harrod mechanisms that include ethylene coordination to ruthenium, are energetically disfavored.

Journal Article↗
PubMed2004

Quantum mechanical models of the resting state of the vanadium-dependent haloperoxidase.

Density functional theory has been used to investigate structural and electronic properties of complexes related to the resting form of the active site of vanadium haloperoxidase as a function of environment and protonation state. Results obtained by studying models of varying size and complexity highlight the influence of environment and protonation state on the structure and stability of the metal cofactor. The study shows that, in the trigonal bipyramidal active site, where one axial position is occupied by a key histidine, the trans position cannot contain a terminal oxo group. Further, a highly negatively charged vanadate unit is not stable. Protonation of at least one equatorial oxo ligand appears necessary to stabilize the metal cofactor. The study also indicates that, while at rest within the protein, the vanadate unit is most likely an anion with an axial hydroxide and an equatorial plane containing two oxos and a hydroxide. For the neutral, protonated state of the vanadate unit, there were two minima found. The first structure is characterized by an axial water with two oxo and one hydroxo group in the equatorial plane. The second structure contains an axial hydroxo group and an equatorial plane composed of one oxo and two hydroxo oxygen atoms. These two species are not significantly different in energy, indicating that either form may be important during the catalytic cycle. These data support the initial crystallographic assignment of an axially bound hydroxide, but an axial water is also a possibility. This study also shows that the protonation state of the vanadate ion is most likely greater than previously proposed.

Binding Sites↗
PubMed2004

Reaction of the 1,8-bis(diphenylmethylium)naphthalenediyl dication with fluoride: formation of a cation containing a C-F-->C bridge.

Treatment of 1,8-bis(diphenylhydroxymethyl)naphthalene with a mixture of [HBF(4)](aq) and (CF(3)CO)(2)O affords the corresponding dication, 1,8-bis(diphenylmethylium)naphthalenediyl (1(2+)), which was isolated as the [BF4]- salt. This dication has been fully characterized, and its structure has been studied computationally. The (13)C NMR resonance of the methylium centers appears at 207.7 ppm. As indicated by an X-ray single-crystal analysis, the vicinal methylium centers are separated by 3.112(4) A. Dication (1(2+)) reacts with fluoride to afford [1-F]+ which has been isolated as the [BF4]- salt. The fluorine atom of [1-F](+) is connected to one of the former methylium centers through a typical C-F bond of 1.424(2) A and forms a long interaction of 2.444(2) A with the other methylium center. While the structure of [1-F]+ can be largely accounted for by considering a simple methylium formulation, density functional calculations followed by an Atom In Molecules analysis as well as a calculation of the Boys localized orbitals indicate that the long C-F interaction of 2.444(2) A corresponds to a dative bond. Hence, formulation of [1-F]+ as an unsymmetrical fluoronium must also be considered. As indicated by 1H NMR spectroscopy, the structure of this ion is fluxional; the fluorine atom oscillates between the former methylium centers with apparent activation parameters of DeltaH++ = 52(+/-3) kJ mol(-1) and DeltaS++ = -18(+/-9) J K(-1) mol(-1) as derived from line shape analysis. This dynamic process, which has also been studied theoretically by B3LYP density functional theory and Møller-Plesset second-order perturbation theory methods, involves symmetrical fluoronium ions as low-energy transition states.

Journal Article↗
PubMed2004

Dinuclear ruthenium and iron complexes containing palladium and platinum with tri-tert-butylphosphine ligands: synthesis, structures, and bonding.

The reaction of Pd(PBu(t)(3))(2) with Ru(CO)(5) yielded the dipalladium-diruthenium cluster complex Ru(2)(CO)(9)[Pd(PBu(t)(3))](2), 10. The reaction of Pt(PBu(t)(3))(2) with Ru(CO)(5) at room temperature afforded the diplatinum-diruthenium cluster complex Ru(2)(CO)(9)[Pt(PBu(t)(3))](2), 12, and the monoplatinum-diruthenium cluster PtRu(2)(CO)(9)(PBu(t)(3)), 11. All three complexes contain a diruthenium group with bridging Pd(PBu(t)(3)) or Pt(PBu(t)(3)) groups. Compound 11 can be converted to 12 by reaction with an additional quantity of Pt(PBu(t)(3))(2). The reaction of 12 with hydrogen at 68 degrees C yielded the dihydrido complex Pt(2)Ru(2)(CO)(8)(PBu(t)(3))(2)(micro-H)(2), 13. This complex contains a Ru(2)Pt(2) cluster with hydride ligands bridging two of the Ru-Pt bonds. The reaction of Fe(2)(CO)(9) with Pt(PBu(t)(3))(2) yielded the platinum-diiron cluster complex PtFe(2)(CO)(9)(PBu(t)(3)), 14, which is analogous to 11. All new complexes were characterized crystallographically. Molecular orbital calculations of 10 reveal an unusual delocalized metal-metal bonding system involving the Pd(PBu(t)(3)) groups and the Ru(2)(CO)(9) group.

Journal Article↗
PubMed2004

Bimetallic cluster complexes: the synthesis, structures, and bonding of ruthenium carbonyl cluster complexes containing palladium and platinum with the bulky tri-tert-butyl-phosphine ligand.

The bis-phosphine compounds M(PBut3)2, M = Pd and Pt, readily eliminate one PBut3 ligand and transfer MPBut3 groups to the ruthenium-ruthenium bonds in the compounds Ru3(CO)12, Ru6(CO)17(micro6-C), and Ru6(CO)14(eta6-C6H6)(micro6-C) without displacement of any of the ligands on the ruthenium complexes. The new compounds, Ru3(CO)12[Pd(PBut3)]3, 10, and Ru6(CO)17(micro6-C)[Pd(PBut3)]2, 11, Ru6(CO)17(micro6-C)[Pt(PBut3)]n, n = 1 (12), n = 2 (13), and Ru6(CO)14(eta6-C6H6)(micro6-C)[Pd(PBut3)]n, n = 1 (15), n = 2 (16), have been prepared and structurally characterized. In most cases the MPBut3 groups bridge a pair of mutually bonded ruthenium atoms, and the associated Ru-Ru bond distance increases in length. Fenske-Hall calculations were performed on 10 and 11 to develop an understanding of the electron deficient metal-metal bonding. 10 undergoes a Jahn-Teller distortion to increase bonding interactions between neighboring Ru(CO)4 and Pd(PBut3) fragments. 11 has seven molecular orbitals important to cluster bonding in accord with cluster electron-counting rules.

Journal Article↗
PubMed2004

Nickel-manganese sulfido carbonyl cluster complexes. synthesis, structure, and properties of the unusual paramagnetic complexes Cp2Ni2Mn(CO)3(mu 3-E)2, E = S, Se.

The reaction of Mn(2)(CO)(7)(mu-S(2)) with [CpNi(CO)](2) yielded the paramagnetic new compound Cp(2)Ni(2)Mn(CO)(3)(mu(3)-S)(2) (1) and a new hexanuclear metal product Cp(2)Ni(2)Mn(4)(CO)(14)(mu(6)-S(2))(mu(3)-S)(2) (2). Structurally, compound 1 contains two triply bridging sulfido ligands on opposite sides of an open Ni(2)Mn triangular cluster. EPR and temperature-dependent magnetic susceptibility measurements of 1 show that it contains one unpaired electron. The electronic structure of 1 was determined by Fenske-Hall molecular orbital calculations which show that the unpaired electron occupies a low lying antibonding orbital delocalized unequally across the three metal atoms. The selenium homologue Cp(2)Ni(2)Mn(CO)(3)(mu(3)-Se)(2) (3) was obtained from the reaction of a mixture of Mn(2)(CO)(10) and [CpNi(CO)](2) with elemental selenium and Me(3)NO.2H(2)O. It also has one unpaired electron. Compound 1 reacted with elemental sulfur to yield the dinickeldimanganese compound, Cp(2)Ni(2)Mn(2)(CO)(6)(mu(4)-S(2))(mu(4)-S(5)), 4, which can also be made from the reaction of Mn(2)(CO)(7)(mu-S(2)) with [CpNi(CO)](2) and sulfur. Compound 4 was converted back to 1 by sulfur abstraction using PPh(3). The reaction of Mn(2)(CO)(10) with [CpNi(CO)](2) in the presence of thiirane yielded the ethanedithiolato compound CpNiMn(CO)(3)(mu-SCH(2)CH(2)S) (5), which was also obtained from the reaction of Mn(4)(CO)(15)(mu(3)-S(2))(mu(4)-S(2)) with [CpNi(CO)](2) in the presence of thiirane. Compound 5 reacted with additional quantities of thiirane to yield the new compound CpNiMn(CO)(3)[mu-S(CH(2)CH(2)S)(2)], 6, which contains a 3-thiapentanedithiolato ligand that bridges the two metal atoms. Compound 6 was also obtained from the reaction of Mn(2)(CO)(10) with [CpNi(CO)](2) and thiirane. The molecular structures of the new compounds 1-6 were established by single-crystal X-ray diffraction analyses.

Journal Article↗
PubMed2004

Density functional calculations on the conversion of azide and carbon monoxide to isocyanate and dinitrogen by a nickel to sulfur rebound mechanism.

Density functional calculations (B3 LYP & BP86) on a model system for the reaction between carbon monoxide and [Ni(N(3))('S(3)')](-) ('S(3)'(2-)=bis(2-mercaptophenyl)sulfide (2-)) predict a three-step mechanism. First, CO attacks the nickel to generate a pseudo "square-pyramidal" complex, in which CO, N(3) (-), and two sulfides are basal and the central S atom of the 'S(3)'(2-) ligand backs away from Ni to form a weak Ni-S apical bond. Then, CO inserts into the Ni-N bond and the weak apical Ni--S bond rebounds to its original strength as the nickel forms a square-planar intermediate. Finally, in a one-step process N(2) leaves as the remaining N atom and carbonyl rearrange to produce the nickel isocyanate product [Ni(NCO)('S(3)')](-).

Azides↗
PubMed2004

Structures and energetics of models for the active site of acetyl-coenzyme a synthase: role of distal and proximal metals in catalysis.

Acetyl-coenzyme A (CoA) synthase/carbon monoxide dehydrogenase (ACS/CODH) is a bifunctional enzyme that generates CO from carbon dioxide in the C-cluster of the beta subunit and synthesizes acetyl-CoA from carbon monoxide (CO), CoA, and CH3+ at the active site of the A-cluster in the alpha subunit. On the basis of density functional calculations, we predict that methylation of Nip occurs first, and CO then adds to the NipII-CH3 species to form the intermediate, NipII(CO)(CH3), in which Nip deligates one of its SNid bonds. The CO-insertion/CH3-migration occurs on one metal, the proximal Ni, forming the trigonal planar NipII-acetyl intermediate. The thiolate can bind to NipII and reductively eliminate the thioester. Our calculations disfavor the unprecedented bimetallic CO-insertion/CH3-migration. Ni in the proximal site produces a better catalyst than does Cu.

Acetate-CoA Ligase↗
PubMed2003

Experimental and computational evidence for a boron-assisted, sigma-bond metathesis pathway for alkane borylation.

Photoejection of one CO ligand from isolated CpM(CO)n+1BR2 (n = 1: M = Fe, Ru; n = 2: M = Mo,W; R2 = catecholate or pinacolate) compounds produces a coordinatively unsaturated 16 e- intermediate, a cyclic dioxaboryl transition metal complex, that can efficiently and selectively initiate regioselective C-H bond activation and can be used in the functionalization of alkanes. This chemistry appears distinct from that reported previously for related CpM(CO)n complexes of alkyl and aryl ligands. We show here by a combination of experimental and theoretical studies that the "unoccupied" p orbital of dioxaboryl ligands are intimately involved in the C-H bond activation step and that this hydrogen transfer to boron occurs by a boron-assisted, metal-mediated sigma-bond metathesis. The "unoccupied" p orbital of boron lowers the energy of the transition state and the intermediates by accepting electron density from the metal. The metal-bound borane then rotates, transfers back through a sigma-bond metathesis to capture the alkyl, and leaves the metal hydride.

Journal Article↗
PubMed2002

How electron flow controls the thermochemistry of the addition of olefins to nickel dithiolenes: predictions by density functional theory.

The reaction of a nickel dithiolene complex (1) and ethylene is a two-step process, in which the trans-product (2) forms first in the direct addition of the olefin to 1, while the more thermodynamically stable cis-product (3) involves isomerization of 2. The introduction of electron-withdrawing groups (cyano or trifluoromethyl) not only significantly lowers the activation energy (TS1) for the formation of trans-product, but it also strongly stabilizes the products (2, 3) such that they are favored by the free energy. However, these substituents leave the barrier for the conformational transformation step (TS2) nearly unchanged. On reduction, the previously favored adduct is now strongly disfavored.

Journal Article↗
PubMed2002

High-spin Ni(II), a surprisingly good structural model for [NiFe] hydrogenase.

The first density functional calculations on high-spin (HS) Ni(II) models for the active site of the [NiFe] hydrogenases predict a ligand arrangement about Ni that is in better agreement with the crystal structures than previous predictions for low-spin (LS) Ni(II) models. With the crystal structures' geometry, the HS form is approximately 20 kcal/mol lower in energy than the LS one.

Binding Sites↗
PubMed2001

IR spectroelectrochemical study of the binding of carbon monoxide to the active site of Desulfovibrio fructosovorans Ni-Fe hydrogenase.

The binding of carbon monoxide, a competitive inhibitor of many hydrogenases, to the active site of Desulfovibrio fructosovorans hydrogenase has been studied by infrared spectroscopy in a spectroelectrochemical cell. Direct evidence has been obtained of which redox states of the enzyme can bind extrinsic CO. Redox states A, B and SU do not bind extrinsic CO; only after reductive activation of the hydrogenase can CO bind to the active site. Two states with bound extrinsic CO can be distinguished by FTIR. These two states are in redox equilibrium and are most probably due to different oxidation states of the proximal 4Fe-4S cluster. Vibrational frequencies and theoretical quantum mechanics studies (DFT) of this process preclude the possibility of strong bonding of extrinsic CO to the Fe or Ni atoms of the active site. We propose that CO inhibition is caused by weak interaction of the extrinsic ligand with the Ni atom, blocking electron and proton transfer at the active site. A calculated structure with a weakly bound extrinsic CO at Ni has relative CO frequencies in excellent agreement with the experimental ones.

Carbon Monoxide↗