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Biomedical subjects

Michael S Strano

Publications and source records attributed to Michael S Strano.

At least 19 recordsLinked to original sources
PubMed2006

Aptamer-capped nanocrystal quantum dots: a new method for label-free protein detection.

We demonstrate that aptamer-capped near-infrared PbS quantum dots (QDs) can detect a target protein based on selective charge transfer. The water-soluble QDs are synthesized with the thrombin-binding aptamer, which retains the secondary quadruplex structure necessary for binding to thrombin. These QDs have diameters of 3-6 nm and fluoresce around 1050 nm. When the aptamer-functionalized QD binds to its target, a fluorescence quenching occurs due to charge transfer from amine groups on the protein to the QD. Thrombin is detected within 1 min with a detection limit of approximately 1 nM. This selective detection is observed even in the presence of high background concentrations of interfering negatively or positively charged proteins, suggesting that aptamer-capped QDs could be useful for label-free protein assays.

Aptamers, Nucleotide↗
PubMed2006

Estimation of the (n,m) concentration distribution of single-walled carbon nanotubes from photoabsorption spectra.

Deconvolution of the absorption spectrum of single-walled carbon nanotubes (SWNTs) into distinct (n,m) contributions is complicated because transition energies are closely spaced. The algorithm presented in this work attempts to simplify the problem by grouping nanotubes with similar transition energies and assigning weights to their spectral contributions. Voigt line shapes were used to fit absorption spectra of sodium dodecyl sulfate suspended HiPco SWNT and CoMoCat SWNT. Line widths for the metallic (93.42 meV) and two semiconducting regions (57.96 and 29.86 meV) were obtained from the absorption spectra of DNA-wrapped SWNT fractionated by ion-exchange chromatography. The method is used to describe the reaction kinetics of certain HiPco SWNTs upon reaction with 4-chlorobenzene diazonium and 4-hydroxybenzene diazonium salts. The code for deconvolution has been provided as open source in the Supporting Information for future modifications.

Algorithms↗
PubMed2006

Charge transfer from metallic single-walled carbon nanotube sensor arrays.

This paper explores the possibility of using arrays of metallic carbon nanotubes as sensors. Unlike their semiconducting counterparts, single-walled carbon nanotube arrays or networks that are dominated by metallic conduction pathways have not been investigated for their environmental sensitivity. In this work, we demonstrate transduction of molecular adsorption via charge transfer through predominantly metallic single-walled carbon nanotubes. Raman spectroscopy and electric field dependent transport confirm that signal transduction takes place through primarily large diameter metallic nanotubes. This unique signal transduction mechanism might have implications for novel sensors. The scaling of the signal with array impedance is well described using an irreversible binding model developed previously. The arrays have several advantages including a simple, two-electrode fabrication, rapid regeneration, and a responsivity that scales predictably and linearly with the number of adsorption sites. An array-assisted hydrolysis of reactive analytes is found to regenerate the nanotube surface from hydrolyzable species which include important organophosphate nerve agents.

Journal Article↗
PubMed2006

Dielectrophoresis of surface conductance modulated single-walled carbon nanotubes using catanionic surfactants.

Dielectrophoresis has received considerable attention for separating nanotubes according to electronic types. Here we examine the effects of surface conductivity of semiconducting single walled carbon nanotubes (SWNT), induced by ionic surfactants, on the sign of dielectrophoretic force. The crossover frequency of semiconducting SWNT increases rapidly as the conductivity ratio between the particle and medium increases, leading to an incomplete separation of ionic surfactant suspended SWNT at an electric field frequency of 10 MHz. To reduce the conductivity ratio, the surface charge of SWNT is neutralized by an equimolar mixture of anionic surfactant sodium dodecyl sulfate (SDS) and cationic surfactant cetyltrimethylammonium bromide (CTAB), resulting in negative dielectrophoresis of semiconducting species at 10 MHz. A comparative Raman spectroscopy study shows a nearly complete separation of metallic SWNT.

Journal Article↗
PubMed2006

Optical detection of DNA conformational polymorphism on single-walled carbon nanotubes.

The transition of DNA secondary structure from an analogous B to Z conformation modulates the dielectric environment of the single-walled carbon nanotube (SWNT) around which it is adsorbed. The SWNT band-gap fluorescence undergoes a red shift when an encapsulating 30-nucleotide oligomer is exposed to counter ions that screen the charged backbone. The transition is thermodynamically identical for DNA on and off the nanotube, except that the propagation length of the former is shorter by five-sixths. The magnitude of the energy shift is described by using an effective medium model and the DNA geometry on the nanotube sidewall. We demonstrate the detection of the B-Z change in whole blood, tissue, and from within living mammalian cells.

3T3 Cells↗
PubMed2006

Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes.

We demonstrate the optical detection of DNA hybridization on the surface of solution suspended single-walled carbon nanotubes (SWNTs) through a SWNT band gap fluorescence modulation. Hybridization of a 24-mer oligonucleotide sequence with its complement produces a hypsochromic shift of 2 meV, with a detection sensitivity of 6 nM. The energy shift is modeled by correlating the surface coverage of DNA on SWNT to the exciton binding energy, yielding an estimated initial fractional coverage of 0.25 and a final coverage of 0.5. Hybridization on the nanotube surface is confirmed using Forster resonance energy transfer of fluorophore-labeled DNA oligonucleotides. This detection is enabled through a new technique to suspend SWNTs using adsorption of single-stranded DNA and subsequent removal of free DNA from solution. While the kinetics of free DNA hybridization are relatively fast (<10 min), the kinetics of the process on SWNTs are slower under comparable conditions, reaching steady state after 13 h at 25 degrees C. A second-order kinetic model yields a rate constant of k = 4.33 x 10(5) (M h)(-1). This optical, selective detection of specific DNA sequences may have applications in the life sciences and medicine as in vitro or in vivo detectors of oligonucleotides.

DNA Probes↗
PubMed2005

Direct experimental evidence of exciton-phonon bound states in carbon nanotubes.

We present direct experimental observation of exciton-phonon bound states in the photoluminescence excitation spectra of isolated single-walled carbon nanotubes (SWNT) in aqueous suspension. The photoluminescence excitation spectra from several distinct SWNTs show the presence of at least one sideband related to the tangential modes, lying 0.2 eV above the main absorption or emission peak. Both the energy position and line shapes of the sidebands are in excellent agreement with recent calculations [Phys. Rev. Lett. 94, 027402 (2005)] that predict the existence of exciton-phonon bound states, a sizable spectral weight transfer to these exciton-phonon complexes, and that the amount of this transfer depends on the specific nanotube structure and diameter.

Journal Article↗
PubMed2005

In vivo fluorescence detection of glucose using a single-walled carbon nanotube optical sensor: design, fluorophore properties, advantages, and disadvantages.

In this work, several aspects of in vivo glucose detection using a nanotube-based optical sensor are considered. The optical properties of commonly used organic and nanoparticle fluorescent probes are compared with respect to quantum yield, human tissue penetration, and photobleaching stability. The latter two factors are shown to dominate sensor viability and require a near-infrared nanoparticle fluorophore for practical device operation. The dynamics of a model optical sensor are compared to a flux-measuring electrochemical sensor of equal area using a mathematical simulation of a healthy patient ingesting three predefined meals per day. Both sensors demonstrate an approximately linear response to blood glucose levels. It is shown that the optical sensor, which transduces glucose concentration, not flux, directly is significantly more stable to membrane biofouling.

Biosensing Techniques↗
PubMed2005

Evidence for a two-step mechanism in electronically selective single-walled carbon nanotube reactions.

Covalent and noncovalent chemistries that are selective to single-walled carbon nanotubes of a particular electronic type have become increasingly important for electronic structure separation and on-chip modification of nanoelectronic devices. By monitoring transient Raman spectroscopy and photoluminescence (PL) during a reaction with 4-chlorobenzene diazonium in aqueous solution, evidence for a characteristic two-step mechanism with two distinct time constants is uncovered. A long-lived intermediate selectively and noncovalently binds and partially dopes the nanotube surface (tau = 2.4 min). A slower, covalent reaction is tracked using the time-dependent increase in the disorder mode in Raman (tau = 73 min). The transient Raman and PL data are well described using a series of two first-order reactions. The covalent bonding step can be deactivated by changing the structure of the surfactant adsorbed phase, further supporting the mechanism.

Journal Article↗
PubMed2005

Understanding the dynamics of signal transduction for adsorption of gases and vapors on carbon nanotube sensors.

Adsorption dynamics and their influence on signal transduction for carbon nanotube-based chemical sensors are explored using continuum site balance equations and a mass action model. These sensors are shown to possess both reversible and irreversible binding sites that can be modeled independently. For the case of irreversible adsorption, it is shown that the characteristic response time scales inversely with analyte concentration. It is inappropriate to report a detection limit for this type of sensor since any nonzero analyte concentration can be detected in theory but at a cost of increasing transduction time with decreasing concentration. The response curve should examine the initial rate of signal change as a function of analyte concentration. Conversely, a reversible sensor has a predefined detection limit, independent of the detector geometry with a characteristic time scaling that becomes constant in the zero analyte concentration limit. A simple analytical test is presented to distinguish between these two mechanisms from the transient response of a nanotube sensor array. Two systems appearing in the literature are shown to have an irreversible component, and regressed surface rate constants for this component are similar across different sensor geometries and analytes.

Journal Article↗
PubMed2004

Near-infrared optical sensors based on single-walled carbon nanotubes.

Molecular detection using near-infrared light between 0.9 and 1.3 eV has important biomedical applications because of greater tissue penetration and reduced auto-fluorescent background in thick tissue or whole-blood media. Carbon nanotubes have a tunable near-infrared emission that responds to changes in the local dielectric function but remains stable to permanent photobleaching. In this work, we report the synthesis and successful testing of solution-phase, near-infrared sensors, with beta-D-glucose sensing as a model system, using single-walled carbon nanotubes that modulate their emission in response to the adsorption of specific biomolecules. New types of non-covalent functionalization using electron-withdrawing molecules are shown to provide sites for transferring electrons in and out of the nanotube. We also show two distinct mechanisms of signal transduction-fluorescence quenching and charge transfer. The results demonstrate new opportunities for nanoparticle optical sensors that operate in strongly absorbing media of relevance to medicine or biology.

Biosensing Techniques↗
PubMed2004

Concomitant length and diameter separation of single-walled carbon nanotubes.

Gel electrophoresis and column chromatography conducted on individually dispersed, ultrasonicated single-walled carbon nanotubes yield simultaneous separation by tube length and diameter. Electroelution after electrophoresis is shown to produce highly resolved fractions of nanotubes with average lengths between 92 and 435 nm. Separation by diameter is concomitant with length fractionation, and nanotubes that have been cut shortest also possess the greatest relative enrichments of large-diameter species. Longer sonication time causes increased electrophoretic mobility in the gels; thus, ultrasonic processing determines the degree of both length and diameter separation of the nanotubes. The relative quantum yield decreases nonlinearly as the nanotube length becomes shorter. These techniques constitute a preparative, scalable method for separating nanotubes by two important attributes required for electronic and sensor applications.

Journal Article↗
PubMed2004

Optical signatures of the Aharonov-Bohm phase in single-walled carbon nanotubes.

We report interband magneto-optical spectra for single-walled carbon nanotubes in high magnetic fields up to 45 tesla, confirming theoretical predictions that the band structure of a single-walled carbon nanotube is dependent on the magnetic flux phi threading the tube. We have observed field-induced optical anisotropy as well as red shifts and splittings of absorption and photoluminescence peaks. The amounts of shifts and splittings depend on the value of phi/phi(0) and are quantitatively consistent with theories based on the Aharonov-Bohm effect. These results represent evidence of the influence of the Aharonov-Bohm phase on the band gap of a solid.

Journal Article↗
PubMed2003

Probing chiral selective reactions using a revised Kataura plot for the interpretation of single-walled carbon nanotube spectroscopy.

Raman spectroscopy on surfactant-dispersed, aqueous suspensions of single-walled carbon nanotubes is used to verify the energies of interband transitions and validate the spectral assignments of semiconducting and metallic nanotubes determined by spectrofluorimetry for the former and Raman excitation profiles for the latter. The results are compiled into an experimentally based mapping of transition versus nanotube diameter to revise those previously employed using single-electron theoretical treatments. Because this mapping provides the transitions associated with a precise chiral wrapping of a particular nanotube, it allows the monitoring of reaction pathways that are selective to the nanotube chirality vector. This is demonstrated using a model electron-transfer reaction of 4-chlorobenzenediazonium shown to be selective for metallic over semiconducting carbon nanotubes via charge-transfer stabilization of complexes at the surfaces of the former.

Journal Article↗