Biomedical subjects

Muneaki Kamiya

Publications and source records attributed to Muneaki Kamiya.

5 recordsLinked to original sources

PubMed2007

High-order electron-correlation methods with scalar relativistic and spin-orbit corrections.

An assortment of computer-generated, parallel-executable programs of ab initio electron-correlation methods has been fitted with the ability to use relativistic reference wave functions. This has been done on the basis of scalar relativistic and spin-orbit effective potentials and by allowing the computer-generated programs to handle complex-valued, spinless orbitals determined by these potentials. The electron-correlation methods that benefit from this extension are high-order coupled-cluster methods (up to quadruple excitation operators) for closed- and open-shell species, coupled-cluster methods for excited and ionized states (up to quadruples), second-order perturbation corrections to coupled-cluster methods (up to triples), high-order perturbation corrections to configuration-interaction singles, and active-space (multireference) coupled-cluster methods for the ground, excited, and ionized states (up to active-space quadruples). A subset of these methods is used jointly such that the dynamical correlation energies and scalar relativistic effects are computed by a lower-order electron-correlation method with more extensive basis sets and all-electron relativistic treatment, whereas the nondynamical correlation energies and spin-orbit effects are treated by a higher-order electron-correlation method with smaller basis sets and relativistic effective potentials. The authors demonstrate the utility and efficiency of this composite scheme in chemical simulation wherein the consideration of spin-orbit effects is essential: ionization energies of rare gases, spectroscopic constants of protonated rare gases, and photoelectron spectra of hydrogen halides.

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PubMed2007

Polarizability and second hyperpolarizability evaluation of long molecules by the density functional theory with long-range correction.

Polarizabilities and second hyperpolarizabilities of polyacetylene and a hydrogen chain are evaluated by density functional theory (DFT) using a hybrid generalized gradient approximation functional with correct long-range electron-electron interactions. The well known catastrophic overestimate of the hyperpolarizabilities for molecular systems of enhanced length is corrected by the two-electron repulsion operator decomposition technique, integrating the distance-dependent nonlocal exchange effects for long-range interaction, while neither the asymptotically corrected exchange functional for long-range interaction nor ordinary hybrid methods seem to be capable of overcoming the serious drawback of the DFT in polarizability/hyperpolarizability evaluation.

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PubMed2006

Higher-order equation-of-motion coupled-cluster methods for ionization processes.

Compact algebraic equations defining the equation-of-motion coupled-cluster (EOM-CC) methods for ionization potentials (IP-EOM-CC) have been derived and computer implemented by virtue of a symbolic algebra system largely automating these processes. Models with connected cluster excitation operators truncated after double, triple, or quadruple level and with linear ionization operators truncated after two-hole-one-particle (2h1p), three-hole-two-particle (3h2p), or four-hole-three-particle (4h3p) level (abbreviated as IP-EOM-CCSD, CCSDT, and CCSDTQ, respectively) have been realized into parallel algorithms taking advantage of spin, spatial, and permutation symmetries with optimal size dependence of the computational costs. They are based on spin-orbital formalisms and can describe both alpha and beta ionizations from open-shell (doublet, triplet, etc.) reference states into ionized states with various spin magnetic quantum numbers. The application of these methods to Koopmans and satellite ionizations of N2 and CO (with the ambiguity due to finite basis sets eliminated by extrapolation) has shown that IP-EOM-CCSD frequently accounts for orbital relaxation inadequately and displays errors exceeding a couple of eV. However, these errors can be systematically reduced to tenths or even hundredths of an eV by IP-EOM-CCSDT or CCSDTQ. Comparison of spectroscopic parameters of the FH+ and NH+ radicals between IP-EOM-CC and experiments has also underscored the importance of higher-order IP-EOM-CC treatments. For instance, the harmonic frequencies of the A 2Sigma- state of NH+ are predicted to be 1285, 1723, and 1705 cm(-1) by IP-EOM-CCSD, CCSDT, and CCSDTQ, respectively, as compared to the observed value of 1707 cm(-1). The small adiabatic energy separation (observed 0.04 eV) between the X 2Pi and a 4Sigma- states of NH+ also requires IP-EOM-CCSDTQ for a quantitative prediction (0.06 eV) when the a 4Sigma- state has the low-spin magnetic quantum number (s(z) = 1/2). When the state with s(z) = 3/2 is sought, the energy separations converge much more rapidly with the IP-EOM-CCSD value (0.03 eV) already being close to the observed (0.04 eV).

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PubMed2005

Nonlinear optical property calculations by the long-range-corrected coupled-perturbed Kohn-Sham method.

The long-range correction (LC) scheme for the exchange functional of density-functional theory (DFT) was combined with the coupled-perturbed Kohn-Sham (CPKS) method to calculate nonlinear optical response properties. By using this LC-CPKS method, we calculated the hyperpolarizabilities of typical molecules and the dipole moments, polarizabilities, and hyperpolarizabilities of push-pull pi-conjugated systems: p-nitroaniline, 4-amino-4'-nitrostilbene, and alpha,omega-nitroaminopolyenes. It was found that the LC scheme clearly improved the calculation of these optical properties for all of these systems, which have been significantly overestimated by conventional DFTs. We therefore concluded that the long-range exchange interaction played an important role in calculating the optical properties using the DFT formalism.

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PubMed2003

Regional self-interaction correction of density functional theory.

We propose a new simple scheme for self-interaction correction (SIC) of exchange functionals in the density functional theory. In the new scheme, exchange energies are corrected by substituting exchange self-interactions for exchange functionals in regions of self-interaction. To classify the regions of self-interaction, we take advantage of the property of the total kinetic energy density approaching the Weizsäcker density in the case of electrons in isolated orbitals. The scheme differs from conventional SIC methods in that it produces optimized molecular structures. Applying the scheme to the calculation of reaction energy barriers showed that it provides a clear improvement in cases where the barriers are underestimated by conventional "pure" functionals. In particular, we found that this scheme even reproduces a transition state that is not given by pure functionals.

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