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Myrna H Matus

Publications and source records attributed to Myrna H Matus.

7 recordsLinked to original sources
PubMed2007

Theoretical prediction of the heats of formation of C2H5O* radicals derived from ethanol and of the kinetics of beta-C-C scission in the ethoxy radical.

Thermochemical parameters of three C(2)H(5)O* radicals derived from ethanol were reevaluated using coupled-cluster theory CCSD(T) calculations, with the aug-cc-pVnZ (n = D, T, Q) basis sets, that allow the CC energies to be extrapolated at the CBS limit. Theoretical results obtained for methanol and two CH(3)O* radicals were found to agree within +/-0.5 kcal/mol with the experiment values. A set of consistent values was determined for ethanol and its radicals: (a) heats of formation (298 K) DeltaHf(C(2)H(5)OH) = -56.4 +/- 0.8 kcal/mol (exptl: -56.21 +/- 0.12 kcal/mol), DeltaHf(CH(3)C*HOH) = -13.1 +/- 0.8 kcal/mol, DeltaHf(C*H(2)CH(2)OH) = -6.2 +/- 0.8 kcal/mol, and DeltaHf(CH(3)CH(2)O*) = -2.7 +/- 0.8 kcal/mol; (b) bond dissociation energies (BDEs) of ethanol (0 K) BDE(CH(3)CHOH-H) = 93.9 +/- 0.8 kcal/mol, BDE(CH(2)CH(2)OH-H) = 100.6 +/- 0.8 kcal/mol, and BDE(CH(3)CH(2)O-H) = 104.5 +/- 0.8 kcal/mol. The present results support the experimental ionization energies and electron affinities of the radicals, and appearance energy of (CH(3)CHOH+) cation. Beta-C-C bond scission in the ethoxy radical, CH(3)CH2O*, leading to the formation of C*H3 and CH(2)=O, is characterized by a C-C bond energy of 9.6 kcal/mol at 0 K, a zero-point-corrected energy barrier of E0++ = 17.2 kcal/mol, an activation energy of Ea = 18.0 kcal/mol and a high-pressure thermal rate coefficient of k(infinity)(298 K) = 3.9 s(-1), including a tunneling correction. The latter value is in excellent agreement with the value of 5.2 s(-1) from the most recent experimental kinetic data. Using RRKM theory, we obtain a general rate expression of k(T,p) = 1.26 x 10(9)p(0.793) exp(-15.5/RT) s(-1) in the temperature range (T) from 198 to 1998 K and pressure range (p) from 0.1 to 8360.1 Torr with N2 as the collision partners, where k(298 K, 760 Torr) = 2.7 s(-1), without tunneling and k = 3.2 s(-1) with the tunneling correction. Evidence is provided that heavy atom tunneling can play a role in the rate constant for beta-C-C bond scission in alkoxy radicals.

Journal Article↗
PubMed2006

The heats of formation of diazene, hydrazine, N2H3+, N2H5+, N2H, and N2H3 and the Methyl Derivatives CH3NNH, CH3NNCH3, and CH3HNNHCH3.

The heats of formation of N(2)H, diazene (cis- and trans-N(2)H(2)), N(2)H(3), and hydrazine (N(2)H(4)), as well as their protonated species (diazenium, N(2)H(3)(+), and hydrazinium, N(2)H(5)(+)), have been calculated by using high level electronic structure theory. Energies were calculated by using coupled cluster theory with a perturbative treatment of the triple excitations (CCSD(T)) and employing augmented correlation consistent basis sets (aug-cc-pVnZ) up to quintuple-zeta, to perform a complete basis set extrapolation for the energy. Geometries were optimized at the CCSD(T) level with the aug-cc-pVDZ and aug-cc-pVTZ basis sets. Core-valence and scalar relativistic corrections were included, as well as scaled zero point energies. We find the following heats of formation (kcal/mol) at 0 (298) K: DeltaH(f)(N(2)H) = 60.8 (60.1); DeltaH(f)(cis-N(2)H(2)) = 54.9 (53.2); DeltaH(f)(trans-N(2)H(2)) = 49.9 (48.1) versus >/=48.8 +/- 0.5 (exptl, 0 K); DeltaH(f)(N(2)H(4)) = 26.6 (23.1) versus 22.8 +/- 0.2 (exptl, 298 K); DeltaH(f)(N(2)H(3)) = 56.2 (53.6); DeltaH(f)(N(2)H(3)(+)) = 231.6 (228.9); and DeltaH(f)(N(2)H(5)(+)) = 187.1 (182.7). In addition, we calculated the heats of formation of CH(3)NH(2), CH(3)NNH, and CH(3)HNNHCH(3) by using isodesmic reactions and at the G3(MP2) level. The calculated results for the hydrogenation reaction RNNR + H(2) --> RHNNHR show that substitution of an organic substituent for H improved the energetics, suggesting that these types of compounds may be possible to use in a chemical hydrogen storage system.

Journal Article↗
PubMed2006

Heats of formation and singlet-triplet separations of hydroxymethylene and 1-hydroxyethylidene.

Thermochemical parameters of hydroxymethylene (HC:OH) and 1-hydroxyethylidene (CH3C:OH) were evaluated by using coupled-cluster, CCSD(T), theory, in conjunction with the augmented correlation consistent, aug-cc-pVnZ, basis sets, with n = D, T, Q, and 5, extrapolated to the complete basis set limit. The predicted value at 298 K for Delta Hf(CH2O) is -26.0 +/- 1 kcal/mol, as compared to an experimental value of -25.98 +/- 0.01 kcal/mol, and for Delta Hf(CH:OH) it is 26.1 +/- 1 kcal/mol. The hydroxymethylene-formaldehyde energy gap is 52.1 +/- 0.5 kcal/mol, the singlet-triplet separation of hydroxymethylene is Delta E(ST)(HC:OH) = 25.3 +/- 0.5 kcal/mol, the proton affinity is PA(HC:OH) = 222.5 +/- 0.5 kcal/mol, and the ionization energy is IEa(HC:OH) = 8.91 +/- 0.04 eV. The predicted value at 298 K for Delta Hf(CH3CHO) is -39.1 +/- 1 kcal/mol as compared to an experimental value of -40.80 +/- 0.35 kcal/mol, and for Delta Hf(CH3C:OH) it is 11.2 +/- 1 kcal/mol. The hydroxyethylidene-acetaldehyde energy gap is 50.6 +/- 0.5 kcal/mol, the singlet-triplet separation of 1-hydroxyethylidene is Delta E(ST)(CH3C:OH) = 30.5 +/- 0.5 kcal/mol, the proton affinity is PA(CH3C:OH) = 234.7 +/- 0.5 kcal/mol, and the ionization energy is IEa(CH3C:OH) = 8.18 +/- 0.04 eV. The calculated energy differences between the carbene and aldehyde isomers, and, thus, the heats of formation of the carbenes, differ from the experimental values by 2.5 kcal/mol.

Journal Article↗
PubMed2006

Effect of double bonds on the conducting properties of ciguatoxin 3C and tetrahydropyrane-based polymers: a theoretical study.

The electronic structure of the ciguatoxin 3C is analyzed through the Kohn-Sham model by using two different kinds of basis sets: localized basis set (Gaussian functions) and nonlocalized basis set (plane wave functions). With the localized basis functions, two approximations are used for the exchange-correlation functional: the local density approximation and the generalized gradient approximation. With the nonlocalized basis set, just the local density approximation is used. The energy gap, obtained from the frontier molecular orbitals, for this molecule predicts that this system is a semiconductor, even when the number of double bonds is increased inside the structure. However, as large molecules built with the basic unit--the tetrahydropyrane--of the ciguatoxin 3C are found in nature, it suggests studying the gap in polymeric systems built with the basic unit of this molecule. It is demonstrated that the presence of double bonds reduces considerably the gap, indicating the possibility of forming conducting materials by introducing double bonds in this kind of molecular systems. Thus, molecules strongly linked with biological systems can be used as precursor to build electric conducting systems.

Ciguatoxins↗
PubMed2005

Substituent effects.

Inductive and resonance effects of different substituents (CH3, Cl, NH3, CN, NO2) on the reactivity of the nitrogen and oxygen centers of several saturated and unsaturated hydroxylamine derivates toward hard and soft electrophiles are analyzed in terms of various conceptual DFT based descriptors calculated using B3LYP/6-311G** method. In most cases, the +/-I and +/-M effects are correctly described by these descriptors. The way the substituent effect dies down as the distance between the substituent and the active center increases is also analyzed. It is observed that more than one effect is to be considered to properly understand the effect of a substituent on reactivity.

Journal Article↗
PubMed2004

Basis set effects on frontier molecular orbital energies and energy gaps: a comparative study between plane waves and localized basis functions in molecular systems.

In order to study the Kohn-Sham frontier molecular orbital energies in the complete basis limit, a comparative study between localized functions and plane waves, obtained with the local density approximation exchange-correlation functional is made. The analyzed systems are ethylene and butadiene, since they are theoretical and experimentally well characterized. The localized basis sets used are those developed by Dunning. For the plane-waves method, the pseudopotential approximation is employed. The results obtained by the localized basis sets suggest that it is possible to get an estimation of the orbital energies in the limit of the complete basis set, when the basis set size is large. It is shown that the frontier molecular orbital energies and the energy gaps obtained with plane waves are similar to those obtained with a large localized basis set, when the size of the supercell and the plane-wave expansion have been appropriately calibrated.

Journal Article↗