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Biomedical subjects

N J Turro

Publications and source records attributed to N J Turro.

At least 19 recordsLinked to original sources
PubMed2006

An accessory chromophore in red vision.

In the absence of a red-sensitive visual pigment, some deep-sea fish use a chlorophyll derivative in their green-sensitive rod cells in order to see deep-red light. Here we show that living rods extracted from a salamander can also accumulate an exogenous chlorophyll derivative, chlorin e6, that renders them as sensitive to red light as they are to green. This vision enhancement by an unbleachable chlorophyll derivative might therefore be a general phenomenon in vertebrate photoreception.

Animals↗
PubMed2006

Amyloid beta and neuromelanin--toxic or protective molecules? The cellular context makes the difference.

Alzheimer's disease (AD) and Parkinson's disease (PD) share several pathological mechanisms. The parallels between amyloid beta (Abeta) in AD and alpha-synuclein in PD have been discussed in several reports. However, studies of the last few years show that Abeta also shares several important characteristics with neuromelanin (NM), whose role in PD is emerging. First, both molecules accumulate with aging, the greatest risk factor for AD and PD. Second, in spite of their different structures, Abeta and NM have similar characteristics that could also lead to neuroprotection. Metals are required to catalyze their formation and they can bind large amounts of these metals, generating stable complexes and thus playing a protective role against metal toxicity. Moreover, they may be able to remove toxic species such as oligopeptides and excess cytosolic dopamine. Third, both Abeta and NM have been implicated in parallel aspects of the neuronal death that underlies AD and PD, respectively. For example, both molecules can activate microglia, inducing release of toxic factors such as tumor necrosis factor-alpha (TNF-alpha), interleukin-6 (IL-6), and nitric oxide (NO). A careful analysis of these parallel effects of Abeta and NM, including their seemingly paradoxical ability to participate in both cell death and protection, may lead to an improved understanding of the roles of these molecules in neurodegeneration and also provide insights into possible parallels in the pathological mechanisms underlying AD and PD.

Alzheimer Disease↗
PubMed2005

Photochemical modification and patterning of polymer surfaces by surface adsorption of photoactive block copolymers.

We report a simple photolithographic approach for the creation and micropatterning of chemical functionality on polymer surfaces by use of surface-active block copolymers that contain protected photoactive functional groups. The block copolymers self-assemble at the substrate-air interface to generate a surface that is initially hydrophobic with low surface tension but that can be rendered hydrophilic and functional by photodeprotection with UV radiation. The block copolymer employed, poly(styrene-b-tert butyl acrylate), segregates preferentially to the surface of a polystyrene substrate because of the low surface tension of the polyacrylate blocks. The strong adsorption of block copolymers causes a bilayer structure to form presenting a photoactive polyacrylate layer at the surface. In the example described, the tert-butyl ester groups on the polyacrylate blocks are deprotected by exposure to UV radiation in the presence of added photoacid generators to form surface carboxylic acid groups. Surface micropatterns of carboxylic acid groups are generated by UV exposure through a contact mask. The success of surface chemical modification and pattern formation is demonstrated by X-ray photoelectron spectroscopy and contact angle measurements along with imaging by optical and fluorescence microscopy methods. The resultant chemically patterned surfaces are then used to template patterns of various biomolecules by means of selective adsorption, covalent bonding and molecular recognition mechanisms. The surface modification/patterning concept can be applied to virtually any polymeric substrate because protected functional groups have intrinsically low surface tensions, rendering properly designed block copolymers surface active in almost all polymeric substrates.

Acrylates↗
PubMed2001

Synthesis and properties of an aggregating heterocyclic helicene.

Heterohelicene 10 is synthesized in six steps from 3,3'-bithienyl. Because the number of steps is small, because the yield is 95% in the last (the reaction of a bis-enol ether with 1,4-benzoquinone-a six-step one pot procedure that constructs the helicene skeleton), and because chromatography is not required to purify any of the products in the synthesis, significant amounts are easily prepared. To convert 10 into enantiopure 3, a helicenebisquinone surrounded by four dodecyloxy groups, requires only a precedented three-step sequence. Enantiopure helicene 3, either without solvent or in dodecane (but not in chloroform) aggregates into columnar structures whose optical properties differ markedly from those of the monomer but resemble those shown previously only by aggregates of 1. Evidence of aggregation in the pure material includes optical microscopic observation of long fibrous structures and X-ray diffraction and combined transmission electron microscopic and electron diffraction analyses showing the molecules within the fibers to be organized in columnar arrays. The circular dichroism spectra, specific rotations, and fluorescent emission spectra of the aggregated structures are all distinctive, and, as reported elsewhere, the second harmonic response is very large. The linear polarizations of the monomers' and aggregates' fluorescent emissions differ greatly. The circular polarization of the aggregates' fluorescent emission, after excitation by unpolarized light, is large.

Journal Article↗
PubMed2001

First photosensitized enantiodifferentiating isomerization by optically active sensitizer immobilized in zeolite supercages.

Enantiodifferentiating photoisomerization of (Z)-cyclooctene sensitized by (R)- or (S)-1-methylheptyl benzoate immobilized in zeolite supercages afforded the respective enantiomer pair, (-)- and (+)-(E)-isomer (1E) in 5% enantiomeric excess, whilst racemic 1E was obtained upon homogeneous-phase photosensitization with the same antipodal sensitizer pair, thus demonstrating for the first time that chirally modified zeolites not only serve as supramolecular photosensitizing media but also enhance the original enantiodifferentiating ability of chiral photosensitizer.

Journal Article↗
PubMed2000

From boiling stones to smart crystals: supramolecular and magnetic isotope control of radical-radical reactions in zeolites.

The chemistry of radicals adsorbed on zeolites is remarkable in that the products of radical-radical reactions, which are nonselective in solution, can be made selective and can be controlled by supramolecular effects and magnetic isotope effects. The photolysis of ketones adsorbed on zeolites can be manipulated so that either primary or secondary radicals produced by photolysis can be directed to selected radical-radical reactions which are unknown in solution.

Adsorption↗
PubMed1998

Photochemical protease: site-specific photocleavage of hen egg lysozyme and bovine serum albumin.

Site-specific photocleavage of hen egg lysozyme and bovine serum albumin (BSA) by N-(l-phenylalanine)-4-(1-pyrene)butyramide (Py-Phe) is reported. Py-Phe binds to lysozyme and BSA with binding constants 2.2 +/- 0.3 x 10(5) M-1 and 6.5 +/- 0.4 x 10(7) M-1, respectively. Photocleavage of lysozyme and BSA was achieved with high specificity when a mixture of protein, Py-Phe, and an electron acceptor, cobalt(III) hexammine (CoHA), was irradiated at 344 nm. Quantum yields of photocleavage of lysozyme and BSA were 0.26 and 0.0021, respectively. No protein cleavage was observed in the absence of Py-Phe, CoHA, or light. N-terminal sequencing of the protein fragments indicated a single cleavage site of lysozyme between Trp-108 and Val-109, whereas the cleavage of BSA was found to be between Leu-346 and Arg-347. Laser flash photolysis studies of a mixture of protein, Py-Phe, and CoHA showed a strong transient with absorption centered at approximately 460 nm, corresponding to pyrene cation radical. Quenching of the singlet excited state of Py-Phe by CoHA followed by the reaction of the resulting pyrenyl cation radical with the protein backbone may be responsible for the protein cleavage. The high specificity of photocleavage may be valuable in targeting specific sites of proteins with small molecules.

Amino Acid Sequence↗
PubMed1996

Photo-induced inactivation of viruses: adsorption of methylene blue, thionine, and thiopyronine on Qbeta bacteriophage.

The adsorption of cationic organic dyes (methylene blue, thionine, and thiopyronine) on Qbeta bacteriophage was studied by UV-visible and fluorescence spectroscopy. The dyes have shown a strong affinity to the virus and some have been used as sensitizers for photo-induced inactivation of virus. In the methylene blue concentration range of 0.1-5 microM and at high ratios of dye to virus (greater than 1000 dye molecules per virion), the dyes bind as aggregates on the virus. Aggregation lowers the efficiency of photoinactivation because of self-quenching of the dye. At lower ratios of dye to virus (lower than 500 dye molecules per virion), the dye binds to the virus as a monomer. Fluorescence polarization and time-resolved studies of the fluorescence support the conclusions based on fluorescence quenching. Increasing the ionic strength (adding NaCl) dissociates bound dye aggregates on the virus and releases monomeric dye into the bulk solution.

Adsorption↗
PubMed1994

Oxidation of glycerol to formaldehyde by microsomes: are glycerol radicals produced in the reaction pathway?

Microsomes and reconstituted systems containing cytochrome P450 can oxidize glycerol to formaldehyde in a reaction catalyzed by an oxidant produced from the interaction of nonheme iron with H2O2. To evaluate the mechanism for this oxidation, the generation of glycerol radicals by various systems was compared to rates of formaldehyde production from glycerol. Photolysis of H2O2, oxidation of xanthine by xanthine oxidase in the presence of iron catalysts, or NADPH-dependent microsomal electron transfer in the presence of ferric-EDTA produced hydroxyl radicals. In the presence of glycerol these reaction systems produced DMPO-glycerol radical adducts which were detected by ESR spectroscopy. Despite the production of .OH and glycerol spin-trapped adducts by these reaction systems, very low amounts or nondetectable amounts of formaldehyde were produced from the glycerol. However, significant amounts of formaldehyde were observed when microsomes were incubated in the presence of ferric ammonium sulfate or ferric-ATP, although .OH production was lower with these iron catalysts than with ferric-EDTA. These results fail to support correlation between .OH production and oxidation of glycerol to formaldehyde. Under conditions in which glycerol was oxidized to formaldehyde, no glycerol radical species could be observed with DMPO as the spin-trapping agent. These results suggest the oxidant (not .OH) derived from the interaction of H2O2 with iron apparently cleaves glycerol to formaldehyde without the formation of a radical intermediate. Alternatively, the radical intermediate may be produced at a too low concentration to be detected or the radical intermediate may not be formed as a free species and therefore cannot be spin-trapped.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗
PubMed1994

Fast photoinduced electron transfer through DNA intercalation.

We report evidence for fast photoinduced electron transfer mediated by the DNA helix that requires metal complexes that are avid intercalators of DNA. Here the donor bis(phenanthroline)(dipyridophenazine)ruthenium(II) [Ru(phen)2dppz2+] and acceptor bis(9,10-phenanthrenequinone diimine)(phenanthroline)rhodium(III) [Rh(phi)2phen3+] intercalate into DNA with Kb > 10(6) M-1. Luminescence quenching experiments in the presence of two different lengths of DNA yield upward-curving Stern-Volmer plots and the loss of luminescence intensity far exceeds the change in emission lifetimes. In the presence of a nonintercalative electron acceptor, Ru(NH3)3+(6), Ru(phen)2dppz2+ luminescence is quenched much less efficiently compared to that found for the intercalative Rh(phi)2phen3+ quencher and follows linear Stern-Volmer kinetics; steady-state and time-resolved Stern-Volmer plots are comparable in scale. These experiments are consistent with a model involving fast long-range electron transfer between intercalators through the DNA helix.

DNA↗
PubMed1993

Long-range photoinduced electron transfer through a DNA helix.

Rapid photoinduced electron transfer is demonstrated over a distance of greater than 40 angstroms between metallointercalators that are tethered to the 5' termini of a 15-base pair DNA duplex. An oligomeric assembly was synthesized in which the donor is Ru(phen)2dppz2+ (phen, phenanthroline, and dppz, dipyridophenazine) and the acceptor is Rh(phi)2phen3+ (phi, phenanthrenequinone diimine). These metal complexes are intercalated either one or two base steps in from the helix termini. Although the ruthenium-modified oligonucleotide hybridized to an unmodified complement luminesces intensely, the ruthenium-modified oligomer hybridized to the rhodium-modified oligomer shows no detectable luminescence. Time-resolved studies point to a lower limit of 10(9) per second for the quenching rate. No quenching was observed upon metallation of two complementary octamers by Ru(phen)3(2+) and Rh(phen)3(3+) under conditions where the phen complexes do not intercalate. The stacked aromatic heterocycles of the DNA duplex therefore serve as an efficient medium for coupling electron donors and acceptors over very long distances.

Base Sequence↗
PubMed1993

ESR studies on the production of reactive oxygen intermediates by rat liver microsomes in the presence of NADPH or NADH.

Experiments were carried out using spin-trapping ESR spectroscopy to evaluate in a quantitative and kinetic manner the production of reactive oxygen intermediates by rat liver microsomes. Comparisons between the effectiveness of NADH and that of NADPH in catalyzing microsomal generation of reactive oxygen intermediates were made. Superoxide production was determined by assaying the generation of superoxide dismutase-sensitive stable nitroxyl radicals formed from 1-hydroxy-2,2,6,6-tetramethyl-4-oxo-piperidine. Identical spectra were produced when microsomes were incubated with NADH or NADPH; reaction rates were linear for at least 10 min of reaction and were about three- to fourfold greater with NADPH. In the presence of iron, microsomes catalyze the production of hydroxyl radical during electron transfer. Initial experiments utilizing 5,5-dimethyl-1-pyrroline 1-oxide (DMPO) as the spin-trapping agent proved unsatisfactory for the microsomal system as adequate kinetics could not be determined in view of the rapid decay of the DMPO-OH adduct, as well as secondary adducts such as DMPO-CH3 or DMPO-hydroxyethyl (HER). The spin-trapping agent alpha-[4-pyridyl-1-oxide]-N-tert-butylnitrone (POBN) was evaluated. POBN-OH adducts were somewhat more stable but also rapidly decayed after 2 to 3 min. However, production of POBN-CH3 and POBN-HER adducts was proportional to that of microsomal protein, increased with time over a 5- to 15-min period, and then was relatively stable. The redox cycling agent paraquat increased POBN-HER adduct formation twofold. Formation of the adduct with either NADH or NADPH required an iron catalyst and did not occur in the presence of the iron chelator desferrioxamine. Ferric EDTA was most reactive in catalyzing production of the adduct, ferric DTPA was 60 to 70% as effective, and ferric ATP was 20 to 30% as effective as ferric EDTA, with both reductants. Irrespective of the iron complex, rates of POBN-HER formation with NADH were about 70% those of NADPH. Formation of the adduct was inhibited by catalase, mannitol, and GSH, but not superoxide dismutase. These experiments support the usefulness of POBN plus ethanol for kinetic studies on the production of .OH by microsomes and validate that microsomes in the presence of an iron catalyst generate .OH not only with NADPH as cofactor, but also with NADH.

Animals↗
PubMed1993

Increased NADPH- and NADH-dependent production of superoxide and hydroxyl radical by microsomes after chronic ethanol treatment.

There is increasing evidence that elevated production of reactive oxygen intermediates may contribute to the hepatotoxic actions of ethanol. Microsomes from ethanol-treated rats have been shown to generate oxygen radicals at elevated rates. Most of these studies have utilized chemical analysis techniques to assay for the production of reactive oxygen intermediates. Experiments employing the spin-trapping ESR spectroscopy technique were carried out for a more definitive characterization of production of reactive oxygen intermediates such as superoxide and hydroxyl radical (.OH) by microsomes from ethanol-fed rats and pair-fed controls, in the presence of either NADPH or NADH as the microsomal reductant. Superoxide production was determined by assaying the superoxide dismutase-sensitive generation of stable nitroxyl radical from 1-hydroxy-2,2,6,6-tetramethyl-4-oxo-piperidine resulting from hydrogen abstraction by superoxide radical, while .OH production was determined by assaying the formation of the POBN-alpha-hydroxyethyl radical adduct resulting from addition of the hydroxyethyl radical produced by hydrogen abstraction by .OH. Microsomes from ethanol-treated rats displayed elevated rates of superoxide production with NADPH (50%) as well as with NADH (34%). With both microsomal preparations, the NADPH-dependent rates were three- to fourfold greater than the NADH-dependent rates. Microsomes from the ethanol-treated rats also displayed elevated rates of .OH production (POBN-HER adduct formation) with NADPH (74%) and NADH (52%). With both microsomal preparations, NADPH-dependent rates were equivalent to the rates with NADH. The increase in superoxide and .OH production after ethanol treatment was highly significant (n = 6, P < 0.001). Production of the POBN-HER adduct was sensitive to catalase, mannitol, and GSH, but not to superoxide dismutase. Addition of desferrioxamine caused a marked decrease in the signal intensity; the POBN-HER adduct formed under these conditions most likely reflects the previously reported radical-independent, direct oxidation of ethanol by cytochrome P450. Signal intensity in the presence of desferrioxamine was about threefold higher after ethanol treatment. These results demonstrate that production of reactive oxygen intermediates by microsomes, as determined by ESR spectroscopy, is elevated after chronic ethanol consumption, and that increases in production of reactive oxygen intermediates can be found with NADPH as well as NADH as the microsomal reductant.

Alcoholism↗
PubMed1992

Characterization of dipyridophenazine complexes of ruthenium(II): the light switch effect as a function of nucleic acid sequence and conformation.

Spectroscopic parameters for two novel ruthenium complexes on binding to nucleic acids of varying sequences and conformations have been determined. These complexes, Ru(bpy)2dppz2+ and Ru(phen)2dppz2+ (bpy = 2,2'-bipyridine; phen = 1,10-phenanthroline; dppz = dipyrido[3,2:a-2',3':c]-phenazine) serve as "molecular light switches" for DNA, displaying no photoluminescence in aqueous solution but luminescing intensely in the presence of DNA. The luminescent enhancement observed upon binding is attributed to the sensitivity of the excited state to quenching by water; in DNA, the metal complex, upon intercalation into the helix, is protected from the aqueous solvent, thereby preserving the luminescence. Correlations between the extent of protection (depending upon the DNA conformation) and the luminescence parameters are observed. Indeed, the strongest luminescent enhancement is observed for intercalation into DNA conformations which afford the greatest amount of overlap with access from the major groove, such as in triple helices. Differences are observed in the luminescent parameters between the two complexes which also correlate with the level of water protection. In the presence of nucleic acids, both complexes exhibit biexponential decays in emission. Quenching studies are consistent with two intercalative binding modes for the dppz ligand from the major groove: one in which the metal-phenazine axis lies along the DNA dyad axis and another where the metal-phenazine axis lies almost perpendicular to the DNA dyad axis. Ru(bpy)2dppz2+ and Ru(phen)2dppz2+ are shown here to be unique reporters of nucleic acid structures and may become valuable in the design of new diagnostics for DNA.

Anions↗
PubMed1992

Monomer and excimer fluorescence of horse plasma gelsolin labelled with N-(1-pyrenyl)iodoacetamide.

Horse plasma gelsolin was labelled with the sulfhydryl-specific fluorescent reagent N-(1-pyrenyl)iodoacetamide. The level of incorporation of probe was 1.6 +/- 0.3 mol pyrene/mol gelsolin. The circular dichroism spectrum of pyrenyl-gelsolin and its ability to interact with muscle actin were not different from that found for unmodified gelsolin. The emission from pyrenyl-gelsolin was dominated by a broad emission band centred near 483 nm, characteristic of the presence of pyrene excimers. Analysis of excitation spectra for the monomer and excimer-type fluorescence suggested that ground-state interactions may occur between adjacent pyrenes in the gelsolin structure. In the case either of excimer formation or of ground-state pyrene-pyrene interactions in doubly labelled gelsolin molecules, the modified Cys residues must be in close proximity in the folded protein structure. Thermal denaturation of gelsolin could be monitored by observing the decrease in excimer emission that accompanied heating and unfolding of the tertiary structure. While heat treatment alone did not eliminate excimer fluorescence, digestion of gelsolin with chymotrypsin completely abolished such emission. Also, pyrenyl-gelsolin prepared and studied in 6 M guanidine-HCl exhibited fluorescence characteristic of pyrene monomers exclusively.

Actins↗
PubMed1991

Luminescence of ruthenium(II) polypyridyls: evidence for intercalative binding to Z-DNA.

Photophysical studies have been undertaken to characterize the binding interactions of enantiomers of Ru(phen)3(2+), Ru(DIP)3(2+), and racemic Ru(bpy)2dppz2+ (where phen = 1,10-phenanthroline, DIP = 4,7-diphenylphenanthroline, and dppz = dipyridophenazine) with Z-form poly d(GC). Parallel enhancements in steady state luminescent intensity and a lengthening of luminescent lifetimes are seen for ruthenium enantiomers with Z-DNA as for B-DNA but with enantioselectivities reversed. Greater enhancements are seen for delta-isomers with the right-handed helix but for lambda-isomers with the left-handed helix. Ru(bpy)2dppz2+, an avid intercalator in B-DNA, displays no luminescence free in aqueous solution, but luminesces brightly bound to either B- or Z-poly d(GC). Stern-Volmer quenching studies also support the enantioselective preference in binding to B-DNA by delta-isomers and a reversal with binding to Z-DNA preferentially by the lambda-isomers. Steady state polarization studies indicate a rigid association of the complexes with both B- and Z-DNA on the time-scale of their emission and again with symmetrical enantioselectivities for the left and right-handed helices. Given the well characterized intercalative association of the complexes with B-DNA, the parallel results seen here with Z-DNA point strongly to a comparable intercalative association with the Z-form helix. That molecules may interact with Z-DNA through intercalation has not been demonstrated previously and now requires consideration in describing the range of interactions of small molecules and proteins with Z-DNA.

DNA↗
PubMed1991

Photoinduced electron transfer quenching of excited Ru(II) polypyridyls bound to DNA: the role of the nucleic acid double helix.

In the presence of double helical polynucleotides (sodium poly(dA-dT).poly(dA-dT) or calf thymus DNA), the efficiency of oxidative or reductive electron transfer between photoexcited ruthenium(II) chelates Ru(tap)2(hat)2+ or Ru(phen)2+(3) (where tap = 1,4,5,8-tetraazaphenanthrene, hat = 1,4,5,8,9,12-hexaazatriphenylene, and phen = 1,10-phenanthroline) and appropriate cationic quenchers (ethidium, Ru(NH3)3+(6), methyl viologen, or M(phen)3+(3), where M = Co, Rh, Cr) increases 1-2 orders of magnitude compared to the efficiency of the same quenching in microhomogeneous aqueous medium (kq = 0.3-1.8 x 10(9) M-1 s-1). The enhancement is more pronounced when the binding constant of the quencher (10(3) less than Kb less than 10(6) M-1) is large. Similar trends are found when the biopolymers are replaced by sodium poly(styrenesulfonate) (PSS). The accelerated electron transfer process is proposed to be due mainly to the effect of accumulation of the reagents in the electrostatic field of the polymer; if corrections for this effect are introduced (e.g. ratioing [quencher]/[polynucleotide]), the reaction rate becomes essentially independent of the polymer concentration. Based upon a model for electron transfer reaction of the complexes within a small cylindrical interface around the DNA helix, calculations of the bimolecular electron transfer rate constants are computed to be 10(3) times smaller when the reactants are bound to the double-stranded polynucleotides and decreased mobility of the cationic species is apparent. The effect is less pronounced if a simpler polyelectrolyte (PSS) is employed. Emission lifetimes of the Ru(II) polypyridyls bound to the DNA (0.32-2 microseconds, double exponential decays) are discussed as well.

Aza Compounds↗