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Nigel Goldenfeld

Publications and source records attributed to Nigel Goldenfeld.

13 recordsLinked to original sources

Critical behavior of Griffiths ferromagnets.

From a heuristic calculation of the leading order essential singularity in the distribution of Yang-Lee zeroes, we obtain new scaling relations near the ferromagnetic-Griffiths transition, including the prediction of a discontinuity on the analogue of the critical isotherm. We show that experimental data for the magnetization and heat capacity of La(0.7)Ca(0.3)MnO(3) are consistent with these predictions, thus supporting its identification as a Griffiths ferromagnet.

Journal Article↗

Renormalization-group theory for the phase-field crystal equation.

We derive a set of rotationally covariant amplitude equations for use in multiscale simulation of the two-dimensional phase-field crystal model by a variety of renormalization-group (RG) methods. We show that the presence of a conservation law introduces an ambiguity in operator ordering in the RG procedure, which we show how to resolve. We compare our analysis with standard multiple-scale techniques, where identical results can be obtained with greater labor, by going to sixth order in perturbation theory, and by assuming the correct scaling of space and time.

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Collective evolution and the genetic code.

A dynamical theory for the evolution of the genetic code is presented, which accounts for its universality and optimality. The central concept is that a variety of collective, but non-Darwinian, mechanisms likely to be present in early communal life generically lead to refinement and selection of innovation-sharing protocols, such as the genetic code. Our proposal is illustrated by using a simplified computer model and placed within the context of a sequence of transitions that early life may have made, before the emergence of vertical descent.

Evolution, Molecular↗

Dynamics of precipitation pattern formation at geothermal hot springs.

We formulate and model the dynamics of spatial patterns arising during the precipitation of calcium carbonate from a supersaturated shallow water flow. The model describes the formation of travertine deposits at geothermal hot springs and rimstone dams of calcite in caves. We find explicit solutions for travertine domes at low flow rates, identify the linear instabilities which generate dam and pond formation on sloped substrates, and present simulations of statistical landscape evolution.

Journal Article↗

On the origin and robustness of power-law species-area relationships in ecology.

We present an explanation for the widely reported power-law species-area relationship (SAR), which relates the area occupied by a biome to the number of species that it supports. We argue that power-law SARs are a robust consequence of a skewed species abundance distribution resembling a lognormal with higher rarity, together with the observation that individuals of a given species tend to cluster. We show that the precise form of the SAR transcends the specific details of organism interactions, enabling us to characterize its broad trends across taxa.

Animals↗

Coarse-graining of cellular automata, emergence, and the predictability of complex systems.

We study the predictability of emergent phenomena in complex systems. Using nearest-neighbor, one-dimensional cellular automata (CA) as an example, we show how to construct local coarse-grained descriptions of CA in all classes of Wolfram's classification. The resulting coarse-grained CA that we construct are capable of emulating the large-scale behavior of the original systems without accounting for small-scale details. Several CA that can be coarse-grained by this construction are known to be universal Turing machines; they can emulate any CA or other computing devices and are therefore undecidable. We thus show that because in practice one only seeks coarse-grained information, complex physical systems can be predictable and even decidable at some level of description. The renormalization group flows that we construct induce a hierarchy of CA rules. This hierarchy agrees well with apparent rule complexity and is therefore a good candidate for a complexity measure and a classification method. Finally we argue that the large-scale dynamics of CA can be very simple, at least when measured by the Kolmogorov complexity of the large-scale update rule, and moreover exhibits a novel scaling law. We show that because of this large-scale simplicity, the probability of finding a coarse-grained description of CA approaches unity as one goes to increasingly coarser scales. We interpret this large-scale simplicity as a pattern formation mechanism in which large-scale patterns are forced upon the system by the simplicity of the rules that govern the large-scale dynamics.

Journal Article↗

Roughness-induced critical phenomena in a turbulent flow.

I present empirical evidence that turbulent flows are closely analogous to critical phenomena, from a reanalysis of friction factor measurements in rough pipes. The data collapse found here corresponds to Widom scaling near critical points, and implies that a full understanding of turbulence requires explicit accounting for boundary roughness.

Journal Article↗

Estimation of microbial cover distributions at Mammoth Hot Springs using a multiple clone library resampling method.

We propose the use of cover as a quick, low-resolution proxy for the abundance of microbial species, which reduces polymerase chain reaction bias. We showcase this concept in a computation that uses clone library information from travertine-forming hot springs in Yellowstone National Park to provide estimates of relative covers at different locations within the spring system. Samples were used from two media: the water column and the travertine substrate. The cover distribution is found to approximate a power law for samples within the water column. Significant commonality of species with the highest cover is observed in the water column for all locations, but not for species present in the substrate at different locations or between media at the same location.

Biodiversity↗

Renormalization group approach to multiscale simulation of polycrystalline materials using the phase field crystal model.

We propose a computationally efficient approach to multiscale simulation of polycrystalline materials, based on the phase field crystal model. The order parameter describing the density profile at the nanoscale is reconstructed from its slowly varying amplitude and phase, which satisfy rotationally covariant equations derivable from the renormalization group. We validate the approach using the example of two-dimensional grain nucleation and growth.

Journal Article↗

Global divergence of microbial genome sequences mediated by propagating fronts.

We model the competition between homologous recombination and point mutation in microbial genomes, and present evidence for two distinct phases, one uniform, the other genetically diverse. Depending on the specifics of homologous recombination, we find that global sequence divergence can be mediated by fronts propagating along the genome, whose characteristic signature on genome structure is elucidated, and apparently observed in closely related Bacillus strains. Front propagation provides an emergent, generic mechanism for microbial "speciation," and suggests a classification of microorganisms on the basis of their propensity to support propagating fronts.

Bacillus↗

Computational irreducibility and the predictability of complex physical systems.

Using elementary cellular automata (CA) as an example, we show how to coarse grain CA in all classes of Wolfram's classification. We find that computationally irreducible physical processes can be predictable and even computationally reducible at a coarse-grained level of description. The resulting coarse-grained CA which we construct emulate the large-scale behavior of the original systems without accounting for small-scale details. At least one of the CA that can be coarse grained is irreducible and known to be a universal Turing machine.

Journal Article↗

Computationally efficient phase-field models with interface kinetics.

We present a phase-field model of solidification which allows efficient computations in the regime when interface kinetic effects dominate over capillary effects. The asymptotic analysis required to relate the parameters in the phase field with those of the original sharp-interface model is straightforward, and the resultant phase-field model can be used for a wide range of material parameters.

Journal Article↗