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Biomedical subjects

Nikolai I Avdievich

Publications and source records attributed to Nikolai I Avdievich.

6 recordsLinked to original sources

Flexible biradicals in liquid and supercritical carbon dioxide: the exchange interaction, the chain dynamics, and a comparison with conventional solvents.

X-band time-resolved electron paramagnetic resonance (TREPR) spectra of three flexible biradicals of varying chain length and structure were obtained in liquid and supercritical carbon dioxide (CO2) solutions and compared to conventional solvents. For C16 acyl-alkyl biradical 1a, an average spin exchange interaction between the radical centers, J(avg), was obtained by spectral simulation using a simple model for spin-correlated radical pairs (SCRPs) and a small amount of T2 relaxation from a previously established J modulation mechanism. A large solvent effect on J(avg) was observed for the first time, varying by almost 1 order of magnitude from CO2 (J(avg) = -120 +/- 10 MHz) to heavy mineral oil (-11 +/- 3 MHz) for 1a. For C15 bis(alkyl) biradical 1b, spectra obtained under supercritical conditions are only slightly different from those detected in liquid CO2 but differ from spectra taken in benzene. For C10 acyl-alkyl biradical 2a, more emissive spin polarization due to S-T- mixing is observed in CO2 than in benzene. These results are discussed in terms of solvent properties such as dielectric constant, viscosity, and specific interactions. Both chain dynamics and changes to the equilibrium distribution of end-to-end distances can alter J(avg) and the observed ratio of S-T0 to S-T- mixing; however, faster chain dynamics is concluded to be the most likely cause of the observed effects in these systems.

Journal Article↗

SENSE imaging with a quadrature half-volume transverse electromagnetic (TEM) coil at 4T.

PURPOSE: To demonstrate the feasibility of high-field SENSE imaging of large objects, such as the human head, using a semicircular (half-volume) coil for both transmission and multi-channel reception. MATERIALS AND METHODS: As a proof of concept, we present experimental data obtained using a seven-element half-volume (180 degrees of arc) transmit/receive quadrature transverse electromagnetic (TEM) coil. SENSE images of the human brain were acquired with a reduction factor of R=2, using two degenerate linear modes of the same coil as independent receive channels at 4T. Since the need for additional hardware (i.e., a separate set of receive coils) is eliminated, the design can be substantially simplified. RESULTS: The experimental data demonstrate that linear modes of the half-volume TEM coil have essentially no noise correlation, and their sensitivity profiles satisfy the requirement for small g-factors. Also, this type of coil provides efficient transmission with a relatively large uniform region and a reception profile that is more uniform than that of the surface coils. CONCLUSION: We demonstrate the feasibility of SENSE imaging using a half-volume coil. Half-volume coils allow reduced total power deposition compared to full-volume coils, and may replace the latter in body imaging applications in which the target region of interest (ROI) is smaller than the entire torso.

Brain Mapping↗

Sensitivity enhancement and compensation of RF penetration artifact with planar actively detunable quadrature surface coil.

An actively detunable planar quadrature surface coil for human body imaging at 4 T has been constructed and compared with a conventional linear surface coil. The coil could be used as a transmit/receive or a receive-only device in combination with a volume transmit coil. Transmission, reception profiles and the corresponding images acquired with each coil, as well as with both individual modes of the quadrature coil, are presented. Data collected using a tissue equivalent loaded phantom recorded with the linear surface coil demonstrated significant intensity distortions due to RF penetration artifact. The quadrature surface coil, on the other hand, provided compensation of the artifact, separately in its transmission and reception profiles as well as in the resultant images. Substantial sensitivity gain was also observed for the quadrature coil compared to the linear device. Significant advantages of using the quadrature surface coil over the linear device at 4 T have, therefore, been demonstrated.

Artifacts↗

4 T actively detunable transmit/receive transverse electromagnetic coil and 4-channel receive-only phased array for (1)H human brain studies.

The design and construction of a 4 T transverse electromagnetic (TEM) transmit/receive head coil and a four-channel phased array receive-only RF system are described. To enable both high-resolution imaging of the entire brain and high-resolution spectroscopic imaging, active PIN diode decoupling was used in both the TEM resonator and each surface coil in the array. This configuration allows for both transmission and reception from the volume coil as well as reception from the phased array. The surface coils were decoupled by overlapping the coils and using preamplifier decoupling. Since at high frequencies construction of a lumped element matching quarter wavelength transformer, an important component of the preamplifier decoupling, becomes difficult, a transmission line approach was used. The system was tested and compared to a TEM volume transmit/receive head coil. A four- to sixfold improvement in signal-to-noise ratio from the sensitive volume of the array was achieved.

Brain Mapping↗

Modified perturbation method for transverse electromagnetic (TEM) coil tuning and evaluation.

A modified perturbation method for tuning and testing volume head coils was developed. The common perturbation method, utilizing the change in resonance frequency of a resonator in response to the presence of a small dielectric or magnetic probe, was modified to modulate the frequency shift due to rotation of a probe. This modification enabled the RF magnetic and electric fields as well as the angular distribution of current in the longitudinal elements of the coil to be mapped. The latter serves as a quick test of magnetic field homogeneity by comparing the measured distribution with the sinusoidal function required for the field to be homogenous. The method was experimentally applied to tune and test a transverse electromagnetic (TEM) head coil.

Algorithms↗

Molecular features of the copper binding sites in the octarepeat domain of the prion protein.

Recent evidence suggests that the prion protein (PrP) is a copper binding protein. The N-terminal region of human PrP contains four sequential copies of the highly conserved octarepeat sequence PHGGGWGQ spanning residues 60-91. This region selectively binds Cu2+ in vivo. In a previous study using peptide design, EPR, and CD spectroscopy, we showed that the HGGGW segment within each octarepeat comprises the fundamental Cu2+ binding unit [Aronoff-Spencer et al. (2000) Biochemistry 40, 13760-13771]. Here we present the first atomic resolution view of the copper binding site within an octarepeat. The crystal structure of HGGGW in a complex with Cu2+ reveals equatorial coordination by the histidine imidazole, two deprotonated glycine amides, and a glycine carbonyl, along with an axial water bridging to the Trp indole. Companion S-band EPR, X-band ESEEM, and HYSCORE experiments performed on a library of 15N-labeled peptides indicate that the structure of the copper binding site in HGGGW and PHGGGWGQ in solution is consistent with that of the crystal structure. Moreover, EPR performed on PrP(23-28, 57-91) and an 15N-labeled analogue demonstrates that the identified structure is maintained in the full PrP octarepeat domain. It has been shown that copper stimulates PrP endocytosis. The identified Gly-Cu linkage is unstable below pH approximately 6.5 and thus suggests a pH-dependent molecular mechanism by which PrP detects Cu2+ in the extracellular matrix or releases PrP-bound Cu2+ within the endosome. The structure also reveals an unusual complementary interaction between copper-structured HGGGW units that may facilitate molecular recognition between prion proteins, thereby suggesting a mechanism for transmembrane signaling and perhaps conversion to the pathogenic form.

Amino Acid Sequence↗