Biomedical subjects

Olaf A Cirpka

Publications and source records attributed to Olaf A Cirpka.

11 recordsLinked to original sources

PubMed2006

Pilot-scale in situ bioremediation of uranium in a highly contaminated aquifer. 1. Conditioning of a treatment zone.

To evaluate the potential for in situ bioremediation of U(VI) to sparingly soluble U(IV), we constructed a pilot test facility at Area 3 of the U.S. Department of Energy Natural and Accelerated Bioremediation Research (NABIR) Field Research Center (FRC) in Oak Ridge, TN. The facility is adjacent to the former S-3 Ponds which received trillions of liters of acidic plating wastes. High levels of uranium are present, with up to 800 mg kg(-1) in the soil and 84-210 microM in the groundwater. Ambient groundwater has a highly buffered pH of approximately 3.4 and high levels of aluminum (12-13 mM), calcium (22-25 mM), and nitrate (80-160 mM). Adjusting the pH of groundwater to approximately 5 within the aquifer would deposit extensive aluminum hydroxide precipitate. Calcium is present in the groundwater at levels that inhibit U(VI) reduction, but its removal by injection of a high pH solution would generate clogging precipitate. Nitrate also inhibits U(VI) reduction and is present at such high concentrations that its removal by in situ denitrification would generate large amounts of N2 gas and biomass. To establish and maintain hydraulic control, we installed a four well recirculation system parallel to geologic strike, with an inner loop nested within an outer loop. For monitoring, we drilled three boreholes perpendicular to strike across the inner loop and installed multilevel sampling tubes within them. A tracer pulse with clean water established travel times and connectivity between wells and enabled the assessment of contaminant release from the soil matrix. Subsequently, a highly conductive region of the subsurface was prepared for biostimulation by removing clogging agents and inhibitors and increasing pH. For 2 months, groundwater was pumped from the hydraulically conductive zone; treated to remove aluminum, calcium, and nitrate, and supplemented with tap water; adjusted to pH 4.3-4.5; then returned to the hydraulically conductive zone. This protocol removed most of the aqueous aluminum and calcium. The pH of the injected treated water was then increased to 6.0-6.3. With additional flushing, the pH of the extracted water gradually increased to 5.5-6.0, and nitrate concentrations fell to 0.5-1.0 mM. These conditions were judged suitable for biostimulation. In a companion paper (Wu et al., Environ. Sci. Technol. 2006, 40, 3978-3987), we describe the effects of ethanol addition on in situ denitrification and U(VI) reduction and immobilization.

Bacteria↗

PubMed2006

Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability.

In situ microbial reduction of soluble U(VI) to sparingly soluble U(IV) was evaluated at the site of the former S-3 Ponds in Area 3 of the U.S. Department of Energy Natural and Accelerated Bioremediation Research Field Research Center, Oak Ridge, TN. After establishing conditions favorable for bioremediation (Wu, et al. Environ. Sci. Technol. 2006, 40, 3988-3995), intermittent additions of ethanol were initiated within the conditioned inner loop of a nested well recirculation system. These additions initially stimulated denitrification of matrix-entrapped nitrate, but after 2 months, aqueous U levels fell from 5 to approximately 1 microM and sulfate reduction ensued. Continued additions sustained U(VI) reduction over 13 months. X-ray near-edge absorption spectroscopy (XANES) confirmed U(VI) reduction to U(IV) within the inner loop wells, with up to 51%, 35%, and 28% solid-phase U(IV) in sediment samples from the injection well, a monitoring well, and the extraction well, respectively. Microbial analyses confirmed the presence of denitrifying, sulfate-reducing, and iron-reducing bacteria in groundwater and sediments. System pH was generally maintained at less than 6.2 with low bicarbonate level (0.75-1.5 mM) and residual sulfate to suppress methanogenesis and minimize uranium mobilization. The bioavailability of sorbed U(VI) was manipulated by addition of low-level carbonate (< 5 mM) followed by ethanol (1-1.5 mM). Addition of low levels of carbonate increased the concentration of aqueous U, indicating an increased rate of U desorption due to formation of uranyl carbonate complexes. Upon ethanol addition, aqueous U(VI) levels fell, indicating that the rate of microbial reduction exceeded the rate of desorption. Sulfate levels simultaneously decreased, with a corresponding increase in sulfide. When ethanol addition ended but carbonate addition continued, soluble U levels increased, indicating faster desorption than reduction. When bicarbonate addition stopped, aqueous U levels decreased, indicating adsorption to sediments. Changes in the sequence of carbonate and ethanol addition confirmed that carbonate-controlled desorption increased bioavailability of U(VI) for reduction.

Bacteria↗

PubMed2006

Groundwater dynamics and arsenic mobilization in Bangladesh assessed using noble gases and tritium.

The contamination of groundwater by geogenic arsenic is the cause of major health problems in south and southeast Asia. Various hypotheses proposing that As is mobilized by the reduction of iron (oxy)hydroxides are now under discussion. One important and controversial question concerns the possibility that As contamination might be related to the extraction of groundwater for irrigation purposes. If As were mobilized by the inflow of re-infiltrating irrigation water rich in labile organic carbon, As-contaminated groundwater would have been recharged after the introduction of groundwater irrigation 20-40 years ago. We used environmental tracer data and conceptual groundwater flow and transport modeling to study the effects of groundwater pumping and to assess the role of reinfiltrated irrigation water in the mobilization of As. Both the tracer data and the model results suggest that pumping induces convergent groundwater flow to the depth of extraction and causes shallow, young groundwater to mix with deep, old groundwater. The As concentrations are greatest at a depth of 30 m where these two groundwater bodies come into contact and mix. There, within the mixing zone, groundwater age significantly exceeds 30 years, indicating that recharge of most of the contaminated water occurred before groundwater irrigation became established in Bangladesh. Hence, at least at our study site, the results call into question the validity of the hypothesis that re-infiltrated irrigation water is the direct cause of As mobilization; however, the tracer data suggest that, at our site, hydraulic changes due to groundwater extraction for irrigation might be related to the mobilization of As.

Agriculture↗

PubMed2005

A parametric transfer function methodology for analyzing reactive transport in nonuniform flow.

We analyze reactive transport during in-situ bioremediation in a nonuniform flow field, involving multiple extraction and injection wells, by the method of transfer functions. Gamma distributions are used as parametric models of the transfer functions. Apparent parameters of classical transport models may be estimated from those of the gamma distributions by matching temporal moments. We demonstrate the method by application to measured data taken at a field experiment on bioremediation conducted in a multiple-well system in Oak Ridge, TN. Breakthrough curves (BTCs) of a conservative tracer (bromide) and a reactive compound (ethanol) are measured at multi-level sampling (MLS) wells and in extraction wells. The BTCs of both compounds are jointly analyzed to estimate the first-order degradation rate of ethanol. To quantify the tracer loss, we compare the approaches of using a scaling factor and a first-order decay term. Results show that by including a scaling factor both gamma distributions and inverse-Gaussian distributions (transfer functions according to the advection-dispersion equation) are suitable to approximate the transfer functions and estimate the reactive rate coefficients for both MLS and extraction wells. However, using a first-order decay term for tracer loss fails to describe the BTCs at the extraction well, which is affected by the nonuniform distribution of travel paths.

Biodegradation, Environmental↗

PubMed2005

Mass-transfer limitations for nitrate removal in a uranium-contaminated aquifer.

A field test on in situ subsurface bioremediation of uranium(VI) is underway at the Y-12 National Security Complex in the Oak Ridge Reservation, Oak Ridge, TN. Nitrate has a high concentration at the site, which prevents U(VI) reduction, and thus must be removed. An acidic-flush strategy for nitrate removal was proposed to create a treatment zone with low levels of accessible nitrate. The subsurface at the site contains highly interconnected fractures surrounded by matrix blocks of low permeability and high porosity and is therefore subject to preferential flow and matrix diffusion. To identify the heterogeneous mass transfer properties, we performed a novel forced-gradient tracer test, which involved the addition of bromide, the displacement of nitrate, and the rebound of nitrate after completion of pumping. The simplest conceptualization consistent with the data is that the pore-space consists of a single mobile domain, as well as a fast and a slowly reacting immobile domain. The slowly reacting immobile domain (shale matrix) constitutes over 80% of the pore volume and acts as a long-term reservoir of nitrate. According to simulations, the nitrate stored in the slowly interacting immobile domain in the fast flow layer, at depths of about 12.2-13.7 m, will be reduced by an order of magnitude over a period of about a year. By contrast, the mobile domain rapidly responds to flushing, and a low average nitrate concentration can be maintained if the nitrate is removed as soon as it enters the mobile domain. A field-scale experiment in which the aquifer was flushed with acidic solution confirmed our understanding of the system. For the ongoing experiments on microbial U(VI) reduction, nitrate concentrations must be low in the mobile domain to ensure U(VI) reducing conditions. We therefore conclude that the nitrate leaching out of the immobile pore space must continuously be removed by in situ denitrification to maintain favorable conditions.

Bromides↗

PubMed2005

Experiments on vertical transverse mixing in a large-scale heterogeneous model aquifer.

Vertical transverse mixing is known to be a controlling factor in natural attenuation of extended biodegradable plumes originating from continuously emitting sources. We perform conservative and reactive tracer tests in a quasi two-dimensional 14 m long sand box in order to quantify vertical mixing in heterogeneous media. The filling mimics natural sediments including a distribution of different hydro-facies, made of different sand mixtures, and micro-structures within the sand lenses. We quantify the concentration distribution of the conservative tracer by the analysis of digital images taken at steady state during the tracer-dye experiment. Heterogeneity causes plume meandering, leading to distorted concentration profiles. Without knowledge about the velocity distribution, it is not possible to determine meaningful vertical dispersion coefficients from the concentration profiles. Using the stream-line pattern resulting from an inverse model of previous experiments in the sand box, we can correct for the plume meandering. The resulting vertical dispersion coefficient is approximately approximately 4 x 10(-)(9) m(2)/s. We observe no distinct increase in the vertical dispersion coefficient with increasing travel distance, indicating that heterogeneity has hardly any impact on vertical transverse mixing. In the reactive tracer test, we continuously inject an alkaline solution over a certain height into the domain that is occupied otherwise by an acidic solution. The outline of the alkaline plume is visualized by adding a pH indicator into both solutions. From the height and length of the reactive plume, we estimate a transverse dispersion coefficient of approximately 3 x 10(-)(9) m(2)/s. Overall, the vertical transverse dispersion coefficients are less than an order of magnitude larger than pore diffusion coefficients and hardly increase due to heterogeneity. Thus, we conclude for the assessment of natural attenuation that reactive plumes might become very large if they are controlled by vertical dispersive mixing.

Coloring Agents↗

PubMed2005

Effects of sorption on transverse mixing in transient flows.

Transverse mixing has been identified as a potentially limiting factor for natural attenuation of plumes originating from continuously emitting sources. Under steady-state flow conditions, dispersion is the only process leading to lateral mixing. This process is very slow and cannot explain the lateral spread of plumes observed in the field. When the flow direction fluctuates with time, transverse dispersion is slightly enhanced, but not very pronounced. Under these flow conditions, however, sorption can contribute to mixing into the mean transverse direction. If the reacting compounds differ in their strength of sorption, chromatographic mixing and separation alternate in time-periodic flows. For instantaneous sorption, the plumes may overlap within a stripe of fixed width. In contrast to sorption in local equilibrium, kinetic sorption contributes to mixing also for compounds with identical sorption strength. I derive an analytical expression for the equivalent transverse dispersion coefficient of a kinetically sorbing compound in a spatially uniform flow field undergoing sinusoidal fluctuations in time. This expression may be used for reactive transport calculations in an equivalent domain with constant flow. The effects are the strongest for compounds with a dimensionless partitioning coefficient of about unity, slow sorption kinetics, and slowly fluctuating velocities. For realistic parameters, kinetic sorption contributes to transverse mixing in the same range as heterogeneity.

Adsorption↗

PubMed2004

Measurement of mixing-controlled reactive transport in homogeneous porous media and its prediction from conservative tracer test data.

Numerical and theoretical studies have indicated that pore-scale mixing can be the limiting process for reactions among dissolved compounds in porous media. It has been claimed that multicomponent reactions in porous media could be accurately estimated using mixing coefficients obtained from point-like measurements of conservative tracer concentrations. In this study, we verify these concepts experimentally by tracer tests in a homogeneously packed saturated sand column. Fiber-optic fluorometry was applied to detect point-related concentrations of fluorescein, which was used as both the conservative and the reactive tracer. In the reactive tracer experiment, an acidic solution containing the tracer was displaced by an alkaline solution without tracer. Since the fluorescence of fluorescein is quenched at low pH, the fluorescence intensity measured in the reactive breakthrough curve indicated the mixing of the two solutions. The measured reactive breakthrough curves were compared to predictions based on the conservative breakthrough curves. Predictions and measurements agreed well. Our results imply that incomplete mixing on the pore scale is of minor significance for field-scale applications. On this scale, however, even weak sorption might influence mixing significantly.

Contrast Media↗

PubMed2002

Choice of dispersion coefficients in reactive transport calculations on smoothed fields.

Local dispersion dominates the mixing of compounds that are introduced separately into the subsurface and do not partition into any other than the aqueous phase. Thus, reactions between these compounds are controlled by dispersive mixing if they are not limited by kinetics. I quantify longitudinal dispersive mixing by the longitudinal effective dispersion coefficient of a conservative tracer introduced by a point-like injection [Water Resour. Res. 36 (12) (2000) 3591-3604]. In the upscaling of mixing-controlled reactive transport, I apply the mean velocity and the effective dispersion coefficient to the macroscopic transport calculations, whereas the reactive parameters on the macro-scale are identical to those on the local scale. The applicability of the approach is demonstrated for the transport of compounds undergoing a second-order irreversible bimolecular reaction. Ten realizations of a two-dimensional heterogeneous log-conductivity field are considered. Using the effective dispersion parameters, the overall mass balance is met in the ensemble average, whereas solute spreading is underestimated. I assess the lack of spreading by the difference between the expected macrodispersion and effective dispersion coefficients. I extend the approach to simulations on log-conductivity fields obtained by kriging of regularly spaced conductivity measurements. These fields contain the large-scale features of the true fields but do not resolve the small-scale variability. For the calculations on the kriged fields, the corresponding conditional covariance is substituted into the analytical expressions of effective dispersion, yielding a correction effective dispersion coefficient. The comparison between simulations on the fully resolved fields and on the kriged fields indicates that the approach is valid for wide plumes meeting the ergodicity condition. The high variability of mixing on small scales unresolved by kriging, however, leads to severe uncertainty when mixing-controlled reactions are predicted for narrow plumes.

Computer Simulation↗

PubMedDate not supplied

A nested-cell approach for in situ remediation.

We characterize the hydraulics of an extraction-injection well pair in arbitrarily oriented regional flow by the recirculation ratio, area, and average residence time in the recirculation zone. Erratic regional flow conditions may compromise the performance of the reactor between a single well pair. We propose an alternative four-well system: two downgradient extraction and two upgradient injection wells creating an inner cell nested within an outer cell. The outer cell protects the inner cell from the influence of regional flow. Compared to a two-well system, the proposed four-well system has several advantages: (1) the recirculation ratio within the nested inner cell is less sensitive to the regional flow direction; (2) a transitional recirculation zone between the inner and outer cells can capture flow leakage from the inner cell, minimizing the release of untreated contaminants; and (3) the size of the recirculation zone and residence times can be better controlled within the inner cell by changing the pumping rates. The system is applied at the Field Research Center in Oak Ridge, Tennessee, where experiments on microbial in situ reduction of uranium (VI) are under way.

Bacteria↗

PubMedDate not supplied

Determination of transverse dispersion coefficients from reactive plume lengths.

With most existing methods, transverse dispersion coefficients are difficult to determine. We present a new, simple, and robust approach based on steady-state transport of a reacting agent, introduced over a certain height into the porous medium of interest. The agent reacts with compounds in the ambient water. In our application, we use an alkaline solution injected into acidic ambient water. Threshold values of pH are visualized by adding standard pH indicators. Since aqueous-phase acid-base reactions can be considered practically instantaneous and the only process leading to mixing of the reactants is transverse dispersion, the length of the plume is controlled by the ratio of transverse dispersion to advection. We use existing closed-form expressions for multidimensional steady-state transport of conservative compounds in order to evaluate the concentration distributions of the reacting compounds. Based on these results, we derive an easy-to-use expression for the length of the reactive plume; it is proportional to the injection height squared, times the velocity, and inversely proportional to the transverse dispersion coefficient. Solving this expression for the transverse dispersion coefficient, we can estimate its value from the length of the alkaline plume. We apply the method to two experimental setups of different dimension. The computed transverse dispersion coefficients are rather small. We conclude that at slow but realistic ground water velocities, the contribution of effective molecular diffusion to transverse dispersion cannot be neglected. This results in plume lengths that increase with increasing velocity.

Azo Compounds↗