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P Capy

Publications and source records attributed to P Capy.

12 recordsLinked to original sources
PubMed1992

Evolution of the transposable element mariner in the Drosophila melanogaster species group.

The population biology and molecular evolution of the transposable element mariner has been studied in the eight species of the melanogaster subgroup of the Drosophila subgenus Sophophora. The element occurs in D. simulans, D. mauritiana, D. sechellia, D. teissieri, and D. yakuba, but is not found in D. melanogaster, D. erecta, or D. orena. Sequence comparisons suggest that the mariner element was present in the ancestor of the species subgroup and was lost in some of the lineages. Most species contain both active and inactive mariner elements. A deletion of most of the 3' end characterizes many elements in D. teissieri, but in other species the inactive elements differ from active ones only by simple nucleotide substitutions or small additions/deletions. Active mariner elements from all species are quite similar in nucleotide sequence, although there are some species-specific differences. Many, but not all, of the inactive elements are also quite closely related. The genome of D. mauritiana contains 20-30 copies of mariner, that of D. simulans 0-10, and that of D. sechellia only two copies (at fixed positions in the genome). The mariner situation in D. sechellia may reflect a reduced effective population size owing to the restricted geographical range of this species and its ecological specialization to the fruit of Morinda citrifolia.

Alleles↗
PubMed1992

Sequence analysis of active mariner elements in natural populations of Drosophila simulans.

Active and inactive mariner elements from natural and laboratory populations of Drosophila simulans were isolated and sequenced in order to assess their nucleotide variability and to compare them with previously isolated mariner elements from the sibling species Drosophila mauritiana and Drosophila sechellia. The active elements of D. simulans are very similar among themselves (average 99.7% nucleotide identity), suggesting that the level of mariner expression in different natural populations is largely determined by position effects, dosage effects and perhaps other factors. Furthermore, the D. simulans elements exhibit nucleotide identities of 98% or greater when compared with mariner elements from the sibling species. Parsimony analysis of mariner elements places active elements from the three species into separate groups and suggests that D. simulans is the species from which mariner elements in D. mauritiana and D. sechellia are most likely derived. This result strongly suggests that the ancestral form of mariner among these species was an active element. The two inactive mariner elements sequenced from D. simulans are very similar to the inactive peach element from D. mauritiana. The similarity may result from introgression between D. simulans and D. mauritiana or from selective constraints imposed by regulatory effects of inactive elements.

Animals↗
PubMed1991

Host-plant specialization in the Drosophila melanogaster species complex: a physiological, behavioral, and genetical analysis.

Drosophila sechellia, endemic to the Seychelles, breeds in a single resource, Morinda citrifolia, whereas its close sympatric relative, Drosophila simulans, is a cosmopolitan generalist breeding in a great variety of resources. The effects of morinda on various fitness traits of these two species, their F1 hybrids, and reciprocal backcrosses were analyzed. Morinda fruit is highly toxic to Drosophila species, except D. sechellia. The toxicity is expressed in adults, embryos, and larvae. In embryos, early mortality is a maternally inherited trait, depending only on mother's genotype. The tolerance of D. sechellia to morinda is fully dominant in F1 hybrids. Egg production is stimulated by morinda in D. sechellia but inhibited in D. simulans; in hybrids, the inhibition observed in D. simulans is dominant. Morinda is an oviposition attractant for D. sechellia but a repellent for D. simulans; F1 hybrids and backcross individuals exhibit intermediate, approximately additive, behavior. In the field, adult flies of the two species exhibit opposite behavior in that D. sechellia is attracted to morinda and D. simulans is attracted to banana; hybrids have an intermediate behavior. These differences between the species explain why they do not hybridize in nature although living in sympatry. The various traits have different genetic bases: three or four different genes, or groups of genes, differentiate the ecological niches of the two species.

Animals↗
PubMed1991

Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia.

The abundance of the transposable element mariner differs dramatically in the genomes of the closely related species Drosophila simulans, D. mauritiana, D. sechellia, and D. melanogaster. Natural populations of D. simulans and D. mauritiana have 1-10 and 20-30 copies per diploid genome, respectively, and the insertion sites are polymorphic. The element has not been found in D. melanogaster. In this paper we show that D. sechellia, a species endemic to the Seychelles Islands, contains only two mariner elements that are at fixed sites in the genome. One element, inserted in chromosome 2R at 51A1-2, contains three deletions and is missing much of the 3' end. The other element, inserted in chromosome 3L at 64A10-11, is the full length of 1286 bp. Although the sequence of the full-length element is polymorphic in populations of D. sechellia, at least some of the sequences are closely related to elements from D. simulans and D. mauritiana that are known to be active. However, judging from the progeny of crosses between D. sechellia and D. simulans, the biological activity of the full-length D. sechellia element appears to be low, either because of the nucleotide sequence of the element or because of its position in the genome, or both.

Animals↗
PubMed1990

Active mariner transposable elements are widespread in natural populations of Drosophila simulans.

The occurrence of active, or autonomous, mariner elements was investigated by crossing white-peach mutant Drosophila simulans females with wild-type males from various geographic origins. From a total of 194 experimental crosses only 17 failed to produce progeny with eye mosaicism (MOS, i.e. pigmented spots in otherwise white-peach eyes). Therefore, active mariner elements inducing somatic excision of the copy inserted at the white locus are abundant in all populations sampled. In the experimental crosses the frequency of mosaic offspring ranged from 0 to 100%, showing that the phenotypic expression is highly variable. The MOS phenotype, measured by the number of spots on the eyes, is quite variable within the progeny of single crosses. Although a difference was observed in the average MOS score (percentage of mosaic flies) between northern and southern populations of France, there was no indication of long range variation between geographic populations. Neither was there a systematic difference between recently collected populations and samples kept several years as isofemale lines.

Animals↗
PubMed1989

Latitudinal variation of Adh gene frequencies in Drosophila melanogaster: a Mediterranean instability.

The relationship between allelic frequencies at the Adh locus and latitude of origin was studied using selected published data from various parts of the world and original observations. An overall increase of Adh-F with increasing latitude was observed but the relationship is not linear. Tropical populations are generally similar, having a low frequency of the F allele (average 15 per cent) and a smooth increase with latitude (one per cent for one degree). Between 30 and 42 degrees latitude, populations living in a Mediterranean climate in various parts of the world (Mediterranean countries, Australia's east coast and North America's west coast) are also similar, with a much higher average frequency of F (70 per cent), a steeper slope (two per cent) and a broader range of variability for a given latitude. In a restricted area (near Cordoba in southern Spain) numerous wild collected samples also showed a large variability, sometimes over a very short distance. Allelic frequencies in Mediterranean countries are thus quite unstable and it is proposed that this phenomenon be called a "Mediterranean instability". Further north, numerous samples from France were characterized by an even higher frequency of F (95 per cent) and a greater homogeneity over a broad geographic area. These observations are discussed and the need for more field studies is emphasized.

Africa↗
PubMed1989

Short-range genetic structure of Drosophila melanogaster populations in an Afrotropical urban area and its significance.

Alcohol dehydrogenase (Adh) (alcohol:NAD+ oxidoreductase, EC 1.1.1.1) gene frequencies and ethanol tolerance in Drosophila melanogaster are known to exhibit long-range latitudinal variations on different continents; this has led to the argument that the clines are adaptive. Accordingly, tropical populations are characterized both by a low frequency of Adh-F and by a low ethanol tolerance. In the urban area of Brazzaville (Congo) under an equatorial African climate, an original genetic structure of local populations has been found: Adh-F frequency varies from 3% to 90% when countryside and brewery populations are compared. This variation is accompanied by an increase of ethanol tolerance (from 6% to 13% alcohol). Such differences, which have remained stable for the past 3 years, were observed between collection sites less than 1 km apart. Two other enzyme loci exhibited a correlated variation with Adh-F--i.e., an increase of the S allele of glycerol-3-phosphate dehydrogenase (NAD+) (sn-glycerol-3-phosphate:NAD+ 2-oxidoreductase, EC 1.1.1.8) and of the F allele of glucose-6-phosphate dehydrogenase (D-glucose-6-phosphate:NADP+ 1-oxidoreductase, EC 1.1.1.49). Such observations suggest very strong selective pressures exerted by environmental ethanol that oppose the gene flow due to adult dispersal between contiguous habitats. A functional relationship between the polymorphisms of the three enzyme loci seems likely, and a metabolic interaction involving NAD and NADP cofactors is proposed.

Alleles↗
PubMed1987

Estimation of the allele number in a natural population by the method of isofemale lines.

The number of alleles present in a natural population of unknown structure is estimated using a sequential sampling procedure applied to isofemale lines. Two questions are raised: how many individuals per isofemale line must be assayed and how many isofemale lines must be sampled to get an adequate sample to estimate the number of alleles, at a given risk, of the natural population? On the one hand, we show that when wild females are inseminated once, only two individuals per line are required. On the other hand, the number of isofemale lines that must be sampled depends on the risk chosen of losing an allele, on the number of alleles present in the population and on their drawing probabilities. When the population structure is known, an accurate answer can be provided. For an unknown population structure, one general sequential sampling previously described by J. Rouault and P. Capy is proposed to estimate the number of alleles in the population from data on isofemale lines.

Algorithms↗
PubMed1985

Enzymatic and quantitative variation in European and African populations of Drosophila simulans.

Allozyme polymorphism at 15 loci of D. simulans was studied in 7 natural populations from Europe, North and tropical Africa. Morphological traits were studied in nine European and eleven Afrotropical strains. Within a population, the biochemical polymorphisms of Drosophila simulans and its sibling Drosophila melanogaster are not very different, although D. simulans has a lower heterozygosity. Between-populations genetic differentiation is however much lower in D. simulans than in D. melanogaster. Several loci of D. simulans do exhibit latitudinal trends but these are relatively weak. For morphological traits, both species show an increase of size with latitude, but geographic variation is again less pronounced in D. simulans. Both species are native to tropical Africa and have colonised the rest of the world. During this process, D. simulans has undergone much less geographic differentiation than has D. melanogaster, so that the ecological success of the two species is not correlated with similarities in their genetic properties.

Africa↗