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P Chaudhuri

Publications and source records attributed to P Chaudhuri.

At least 19 recordsLinked to original sources
PubMed2006

Characterization of avian strains of Pasteurella multocida by restriction endonuclease and amplified fragment length polymorphism.

Avian strains of Pasteurella multocida were typed by employing restriction endonuclease analysis (REA) and single enzyme-amplified fragment length polymorphism (AFLP) to evaluate their applicability for epidemiological studies of fowl cholera outbreaks. A total of 72 strains isolated from different avian species (chicken, duck, turkey, quail and goose) belonging to various geographical regions of India were characterized. REA using two different enzymes HhaI and HpaII produced 9 and 18 clusters respectively, whereas Single enzyme-AFLP recognized 32 patterns out of 72 strains typed. The study indicated that REA using HpaII is a simple and resource efficient method, however, further typing with more stringent and rapid method like Single enzyme-AFLP, could drastically enhance investigation in epidemiological studies of fowl cholera outbreaks.

Animals↗
PubMed2006

REP-PCR analysis of Pasteurella multocida isolates from wild and domestic animals in India.

Repetitive extragenic palindromic sequence-based PCR (REP-PCR) was used to characterize 67 field isolates of Pasteurella multocida originating from different animal species and geographical regions of India. REP-PCR was found to be rapid and reproducible (three repeats were done). These isolates yielded different 23 profiles which were clustered into eight groups. The discrimination index was moderate (D value 0.83). Somatic and antigenic typing of the isolates did not reveal any correlation with REP-PCR profiles. There was no host-specific, type-specific, region-specific or pathenogenicity-specific pattern. The REP profiles of isolates obtained from wild animals were similar to those obtained from domestic animals. Two common bands were present in all the isolates irrespective of somatic or antigenic types. The results were not comparable with earlier findings, which had shown high discrimination index and correlation with disease presentation.

Animal Diseases↗
PubMed2006

Random amplified polymorphic DNA (RAPD) analysis of Mycobacterium tuberculosis strains in India.

The usefulness of random amplification of polymorphic DNA (RAPD) analysis for typing Indian strains of M. tuberculosis was investigated. M. tuberculosis H37Rv, M. tuberculosis DT and 42 clinical isolates of M. tuberculosis were subjected to RAPD-PCR using 7 random decamer primers. All 7 primers were found to be differentiated and produced specific RAPD profiles. The polymorphic amplicons served as RAPD markers for M. tuberculosis. The dendrograms, obtained by different primers, showed the discriminatory ability of the primers. RAPD analysis provided a rapid and easy means of identifying polymorphism in M. tuberculosis isolates, and it was found to be a valuable alternative epidemiological tool. In addition, the results of the present study showed heterogeneity in the M. tuberculosis strains in the population studied.

Animals↗
PubMed2006

Detection of Pasteurella multocida in experimentally infected embryonated chicken eggs by PCR assay.

Applicability of polymerase chain reaction (PCR) assay to detect Pasteurella multocida in experimentally infected embryonated chicken egg was assessed in the present study. PCR assay rapidly and specifically detected the genome of P. multocida in amniotic fluid, allantoic fluid and homogenates of infected embryo and its membranes. The sensitivity of detection was as low as 20 bacterial cells/ml of allantoic or amniotic fluids. Detection of P. multocida in dead embryos by PCR was possible up to 6 and 30 days or more following storage of dead embryos at 37 degrees C, and at 4 degrees C as well as at -20 degrees C, respectively. The study revealed that PCR assays could be employed directly for detection and confirmation of P. multocida infection in experimentally infected chicken embryos.

Animals↗
PubMed2006

Immunoreactive outer membrane proteins of Leptospira interrogans serovar Canicola strain Hond Utrecht IV.

BACKGROUND & OBJECTIVES: Leptospirosis is a severe and complex zoonotic disease prevalent in many countries including India. Current leptospiral research is focussed on the identification of the outer membrane proteins (OMPs) of the organism that could be used in developing diagnostic assays for leptospirosis. METHODS: The Leptospira interrogans serovar Canicola was grown in EMJH medium and the cells were subjected to sarcosyl detergent treatment. The sarcosyl soluble (SS) and sarcosyl insoluble (SI) fractions were analyzed by SDS-PAGE and immunoblotting to deduce their protein profile and identifying various immunodominant antigens. RESULTS: The protein profile of SS fractions indicated the presence of three major bands of 41, 32 and 25 kDa and minor bands of 85 and 46 kDa. The SI fraction in serovar Canicola revealed the presence of 112, 93, 77, 43, 36, 29 and 22.5 kDa as major bands and minor bands of 102 and 53 kDa. In immunoblotting, the SS proteins of 41, 32 and 25 kDa and SI proteins of 112, 77, 36 and 22.5 kDa were detected to be major immunogenic proteins. INTERPRETATION & CONCLUSION: In our study immunogenic proteins were extracted from SS and SI fractions and OMPs were similar to those reported in other pathogenic Leptospira strains. These OMPs being unique to all the pathogenic leptospires, can be targeted for diagnostic purpose. Further analysis of the cellular location and expression of leptospiral proteins will be useful in the annotation of genomic sequence data and in providing insight into the biology of Leptospira cells.

Animals↗
PubMed2005

Detection of multiple strains of Pasteurella multocida in fowl cholera outbreaks by polymerase chain reaction-based typing.

Applicability of molecular methods for the detection and differentiation of Pasteurella multocida strains involved in two separate fowl cholera outbreaks in a single poultry farm was investigated. A total of 12 and 18 strains of P. multocida obtained from two separate outbreaks were subjected to phenotypic and genotypic characterization. Phenotypically, all strains were similar; however, DNA-based techniques by employing polymerase chain reaction (PCR) assays were found to be highly specific and sensitive for rapid detection and differentiation of strains. All 30 strains gave amplicons of approximately 460 bp and approximately 1,044 bp specific for P. multocida and capsular serogroup A in the Multiplex Capsular PCR typing system. Molecular typing techniques such as repetitive extragenic palindromic PCR, enterobacterial repetitive intergenic consensus PCR and single primer PCR differentiated all 30 strains into different profiles. However, similar patterns of genome fragments were observed among all strains following restriction endonuclease analysis using the enzyme HpaII. The current investigation revealed involvement of the same and multiple strains of P. multocida in two outbreaks. The results also indicated that molecular methods of detection and typing are rapid in comparison with conventional methods for epidemiological investigations of fowl cholera outbreaks.

Animals↗
PubMed2004

Cloning and sequencing of a 16 kDa outer membrane protein gene of Pasteurella multocida P52.

The outer membrane proteins (OMPs) of Pasteurella multocida are potential immunogens. The 16 kDa OMP of P. multocida P52, serotype B:2, was identified as one of the major immunodominant antigens. The gene omp16, encoding a 16 kDa outer membrane protein, was amplified, cloned into a pBluescript SK(-) vector and sequenced. Complete sequence homology was observed between the 16 kDa OMP gene of P. multocida P52 (serotypes B:2) and P. multocida T16 (somatic serotype 3,4). This gene was distributed among different serotypes of P. multocida and found to localize in a 6.0 kb HindII fragment of the P. multocida genome.

Bacterial Outer Membrane Proteins↗
PubMed2002

Cloning and sequencing of beta toxin gene of Clostridium perfringens type C.

A gene encoding beta toxin was amplified by polymerase chain reaction from C. perfringens type C isolate and cloned in pUC 19 vector. The nucleotide sequence was identical with C. perfringens type B beta toxin gene sequence. The Southern hybridization using labelled beta toxin gene probe revealed the presence of positive signals only in beta producing C. perfingens.

Animals↗
PubMed2001

Tris(pyridinealdoximato)metal complexes as ligands for the synthesis of asymmetric heterodinuclear Cr(III)M species [M = Zn(II), Cu(II), Ni(II), Fe(II), Mn(II), Cr(II), Co(III)]: a magneto-structural study.

Reactions of the LCr(III) unit with an in situ prepared M(PyA)(3)(n-) ion, where L represents 1,4,7-trimethyl-1,4,7-triazacyclononane and PyA(-) is the monoanion of pyridine-2-aldoxime, yield heterodinuclear complexes of general formula [LCr(III)(PyA)(3)M](2+/3+) as perchlorate salts, where M = Cr(II) (1), Mn(II) (2), low-spin Fe(II) (3), Ni(II) (4), Cu(II) (5), Zn(II) (6), and low-spin Co(III) (7). These compounds contain three oximato anions as bridging ligands. The hexadentate ligand with the identical donor atoms, tris(2-aldoximato-6-pyridyl)phosphine, P(PyA)(3), has been employed to prepare a second Cr(III)Ni(II) species 8, whose magnetic properties differ significantly from those of 4. Complexes 1-8 have been characterized on the basis of elemental analysis, mass spectrometry, IR, UV-vis, Mössbauer, and EPR spectroscopies, and variable-temperature (2-295 K) magnetic susceptibility measurements. They are isostructural in the sense that they all contain a terminal Cr(III) ion in a distorted octahedral environment, CrN(3)O(3), and a second six-coordinated metal ion M in a mostly trigonal prismatic MN(6) geometry. The crystal structures of the perchlorate salts of 2-5, 7, and 8 have been determined by X-ray crystallography at 100 K. The structures consist of mixed-metal Cr(III)M(II) and Cr(III)Co(III) complexes with a geometry in which two pseudooctahedral polyhedra are joined by three oximato (=N-O(-)) groups, with an intramolecular Cr.M(Co) distance in the range of 3.4-3.7 A. The cyclic voltammograms of the complexes reveal ligand oxidation and reduction processes, and in addition, metal-centered oxidation processes have been observed. X-band EPR spectroscopy has been used to establish the electronic ground state of the heterodinuclear complexes. Analysis of the susceptibility data indicates the presence of weak exchange interactions, both ferro- and antiferromagnetic, between the paramagnetic centers. A qualitative rationale on the basis of the Goodenough-Kanamori rules is provided for the difference in magnetic behaviors.

Journal Article↗
PubMed2001

Molecular and electronic structure of octahedral o-aminophenolato and o-iminobenzosemiquinonato complexes of V(V), Cr(III), Fe(III), and Co(III). Experimental determination of oxidation levels of ligands and metal ions.

The coordination chemistry of the ligands 2-anilino-4,6-di-tert-butylphenol, H[L(AP)], and N,N"'-bis[2-(4,6-di-tert-butylphenol]diethylenetriamine, H(2)[(L(AP))N(L(AP))], has been studied with the first-row transition metal ions V, Cr, Fe, and Co. The ligands are noninnocent in the sense that the aminophenolato parts, [L(AP)](-) and [L(AP)-H](2)(-), can be readily oxidized to their o-iminobenzosemiquinonato, [L(ISQ)](-), and o-iminobenzoquinone, [L(ISB)], forms. The following neutral octahedral complexes have been isolated as crystalline materials, and their crystal structures have been determined by X-ray crystallography at 100 K: [Cr(III)(L(ISQ))(3)] (1), [Fe(III)(L(ISQ))(3)] (2), [Co(III)(L(ISQ))(3)] (3), [V(V)(L(ISQ))(L(AP)-H)(2)] (4), [V(V)(L(AP)-H)(2)(L(AP))] (5), and [V(V)O[(L(AP))N(L(AP)-H)]] (6). From variable-temperature magnetic susceptibility measurements and X-band EPR spectroscopy it has been established that they possess the ground states: 1, S = 0; 2, S = 1; 3, S = (3)/(2); 4, S = (1)/(2); 5, S = 0; 6, S = 0. The o-iminobenzosemiquinonato radicals (S(rad) = (1)/(2)) couple strongly intramolecularly antiferromagnetically to singly occupied orbitals of the t(2g) subshell at the respective metal ion but ferromagnetically to each other in 3 containing a Co(III) ion with a filled t(2g)(6) subshell. It is demonstrated that the oxidation level of the ligands and metal ions can be unequivocally determined by high-quality X-ray crystallography in conjunction with EPR, UV-vis, and Mössbauer spectroscopies. The spectro- and electrochemistry of these complexes have also been studied in detail. Metal- and ligand-based redox chemistry has been observed. The molecular and electronic structures are compared with those of their o-semiquinonato analogues.

Journal Article↗
PubMed2001

Electronic structure of bis(o-iminobenzosemiquinonato)metal complexes (Cu, Ni, Pd). The art of establishing physical oxidation states in transition-metal complexes containing radical ligands.

The ligand 2-anilino-4,6-di-tert-butylphenol and its 2-(3,5-dichloroanilino)-4,6-di-tert-butylphenol analogue react in CH(3)CN or CH(3)OH solutions with divalent transition metal ions in the presence of air and triethylamine. Depending on the metal:ligand ratio (1:1, 1:2, or 1:3) and the presence (or absence) of the cyclic amine 1,4-dimethyl-1,4,7-triazacyclononane (dmtacn), the following complexes have been isolated as crystalline solids: [Co(III)(L(ISQ))(3)] (1); [Cu(II)(dmtacn)(L(ISQ))]PF(6) (2); [Cu(II)(L(ISQ))(2)] (3); [Ni(II)(L(ISQ))(2)] (4a); [Ni(II)((Cl)L(ISQ))(2)] (4b); [Pd(II)(L(ISQ))(2)] (5). (L(ISQ))(-) represents the monoanionic o-iminobenzosemiquinonate radical (S(rad) = (1)/(2)). Compounds 1-5 have been characterized by single-crystal X-ray crystallography at 100(2) K. For all complexes it is unambiguously established that the O,N-coordinated o-iminobenzosemiquinonato(1-) ligand is present. Complexes 3, 4b, and 5 are square planar molecules which possess an S(t) = (1)/(2), 0, and 0 ground state, respectively, as was established by (1)H NMR and EPR spectroscopies and variable-temperature magnetic susceptibility measurements. Complex 2 possesses an S(t) = 1 ground state which is attained via strong intramolecular ferromagnetic coupling (J = +195 cm(-1)) between the d(x)2-(y)2 magnetic orbital of the Cu(II) ion and the pi-orbital of the ligand radical. Complex 1 contains three mutually orthogonal (L(ISQ))(-*) ligands and has an S(t) = (3)/(2) ground state. It is shown that the electronic structure of 4a and 5 is adequately described as singlet diradical containing a divalent, diamagnetic d(8) configurated central metal ion and two strongly antiferromagnetically coupled (L(ISQ))(-) radical ligands. It is concluded that the same electronic structure prevails in the classic bis(o-diiminobenzosemiquinonato)- and bis(o-benzosemiquinonato)metal complexes of Ni(II), Pd(II), and Pt(II). The electrochemistry of all complexes has been investigated in detail. For 3, 4a, and 5 a series of reversible one-electron-transfer waves leads to the formation of the anions and cations [M(L)(2)](2-),(1-),(1+),(2+) which have been characterized spectroelectrochemically. All redox processes are shown to be ligand-based.

Journal Article↗
PubMed2001

Long-range exchange interactions and integer-spin S(t) = 2 EPR spectra of a Cr(III)Zn(II)Cr(III) species with multiplet mixing.

Synthesis, structural, and spectroscopic characterization of the linear cationic complex [LCr(III)(mu-[dmg)(3)Zn(II))Cr(III)L](2+) (1) in which L = 1,4,7-trimethyl-1,4,7-triazacyclononane and dmg is the dimethylglyoximato anion are reported. The Cr...Cr distance of 1 is 7 A. SQUID magnetic susceptibility measurements reveal the presence of long-range exchange interaction of the Cr(III) terminal ions, mediated by the diamagnetic Zn(II)(dmg)(3) "bridging ligand" (J(0) = -4.4 cm(-1), H(ex) = -2J(0)S(1)S(2), S(i) = 3/2). Multifrequency EPR measurements (S-, X-, Q-band) on frozen solutions were used to establish the intramolecular nature of the exchange coupling and to determine the zero-field splitting (ZFS) parameters and the anisotropic contributions of spin coupling. An effective spin Hamiltonian description was applied for interpretation of the spectra originating from the S(t) = 2 total spin manifold which included up to fourth-order terms for the ZFS. By the help of alternative simulations with the full coupling matrix for two spins S(i) = 3/2 (16 x 16) it could be shown that the higher-order terms in the effective description owe their origin to multiplet mixing due to competing single-ion ZFS (the absolute value of D(i) = 0.2 cm(-1)) and isotropic exchange interaction. The magnetic anisotropy related to dimer properties could be readily explained by dipolar coupling (j(z) = -0.012 cm(-1)). Implications for the interpretation of other integer-spin EPR spectra are discussed.

Journal Article↗
PubMed2001

The symmetry-broken formalism applied to the electronic structure of an iminosemiquinone copper(II) catalyst: a key to the qualitative understanding of its reactivity.

A concise outline of the known derivation of the singlet-triplet energy-gap equations within the symmetry-broken wavefunction framework is given. They allow a computation of the singlet-triplet energy gap for molecules that exhibit a weak antiferromagnetic coupling of electrons. The accuracy of the equations is assessed by computation of the singlet-triplet gaps in model Na2 molecules. Various antiferromagnetic coupling strengths are simulated by the use of different Na-Na bond lengths in the computations. The singlet-triplet energy gaps obtained with the different equations are compared with the gaps computed with the more accurate coupled-cluster methods. Subsequently, the equations are applied to an iminosemiquinone copper(II) complex found previously to have remarkable catalytic properties. The application is performed by employing wave-function equations but with quantities computed within the density functional framework. The electronic ground state of this complex is computed to be a singlet state, which is also the experimental finding. Moreover, the experimental geometry and the singlet-triplet gap are reasonably reproduced by the computation. A straightforward method to determine the magnetic orbitals is suggested and applied. We illustrate that the form of the magnetic orbitals indicates in a qualitative manner that hydrogen-atom abstraction should be a major reaction pathway of the iminosemiquinone copper(II) complex. Hydrogen-atom abstraction has been suggested previously to be the rate-determining step in a catalytic process initiated by the iminosemiquinone copper(II) complex. The results support the notion that the form of the magnetic orbitals might be a qualitative indicator for the reactivity of molecules that exhibit weak antiferromagnetic coupling.

Journal Article↗