PubMed Health⌕ Search

Biomedical subjects

P J Alvarez

Publications and source records attributed to P J Alvarez.

17 recordsLinked to original sources
PubMed2005

Sustained and complete hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) degradation in zero-valent iron simulated barriers under different microbial conditions.

Flow-through columns packed with "aged" zero-valent iron (ZVI) between layers of soil and sand were constructed to mimic a one-dimensional permeable reactive iron barrier (PRB). The columns were continuously fed RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine, ca. 18 mg l(-1)) for over one year. Two columns were bioaugmented with dissimilatory iron reducing bacteria (DIRB) Shewanella algae BrY or Geobacter metallireducens GS-15 to investigate their potential to enhance the reactivity of aged iron by reductive dissolution of passivating iron oxides or via production of biogenic reactive minerals. A third column was not bioaugmented to evaluate colonization by indigenous soil microorganisms. [14C]-RDX was completely removed in all columns at the start of the iron layer, and concentration profiles showed rapid and sustainable RDX removal over one year; however, a phylogenetic profile conducted after one year using DGGE analysis of recovered DNA did not detect S. algae BrY or G. metallireducens in their respective columns. Bacterial DNA was recovered from within the ZVI. Several unidentified 14C-labeled byproducts were present in the effluent of all columns. Dissolved 14C removal and the detection of dissolved inorganic 14C in these columns (but not in the sterile control) suggest microbial-mediated mineralization of RDX and sorption/precipitation of degradation products. Enhanced RDX mineralization in bioaugmented columns was temporary relative to the indigenously colonized column. However, shorter acclimation periods associated with bioaugmented PRBs may be desirable for rapid RDX mineralization, thereby preventing breakthrough of potentially undesirable byproducts. Overall, these results show that high RDX removal efficiency by ZVI-PRBs is achievable and sustainable and that the efficacy and start-up of ZVI-PRBs might be enhanced by bioaugmentation.

Biodegradation, Environmental↗
PubMed2001

Hexahydro-1,3,5-trinitro-1,3,5-triazine mineralization by zerovalent iron and mixed anaerobic cultures.

Soil microcosms were used to evaluate the potential benefits of an integrated microbial-Fe0 system to treat groundwater contamination by RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine). Microcosms amended with both Fe0 filings and municipal anaerobic sludge mineralized RDX faster and to a greater extent than separate treatments, with up to 51% 14CO2 recovery after 77 d. The nitroso byproducts 1,3-dinitro-5-nitroso-1,3,5-triazacyclohexane (MNX), 1,3-dinitroso-5-nitro-1,3,5-triazacyclohexane (DNX), and 1,3,5-trinitroso-1,3,5-triazacyclohexane (TNX) were detected in all microcosms, although these compounds never accumulated above 5% of the added RDX on a molar basis. A soluble intermediate that was tentatively identified as methylenedinitramine [(O2NNH)2CH2] was relatively persistent, although it accumulated to a much lower extent in combined-treatment reactors than in sets with Fe0 or sludge alone. Some of the radiolabel was bound to soil and Fe0 and could not be extracted with CH3CN. This fraction, which was recovered by combustion with a biological oxidizer, was also found at lower concentrations in combined-treatment reactors. This work suggests that permeable reactive Fe0 barriers might be an effective approach to intercept and degrade RDX plumes and that treatment efficiency might be enhanced by biogeochemical interactions through bioaugmentation.

Anaerobiosis↗
PubMed2001

Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate.

Anaerobic ammonium oxidation with nitrite to N2 (anammox) is a recently discovered microbial reaction with interesting potential for nitrogen removal from wastewater. We enriched an anammox culture from a rotating disk contactor (near Kölliken, Switzerland) that was used to treat ammonium-rich leachate with low organic carbon content. This enrichment led to a relative population size of 88% anammox bacteria. The microorganism carrying out the anammox reaction was identified by analysis of the 16S rDNA sequence and by fluorescence in situ hybridization (FISH) with 16S-rRNA-targeting probes. The percentage sequence identity between the 16S rDNA sequences of the Kölliken anammox organism and the archetype anammox strain Candidatus Brocadia anammoxidans was 90.9%, but between 98.5 and 98.9% with Candidatus Kuenenia stuttgartiensis, an organism identified in biofilms by molecular methods. The Kölliken culture catalyzed the anaerobic oxidation of ammonium with nitrite in a manner seemingly identical to that of Candidatus B. anammoxidans, but exhibited higher tolerance to phosphate (up to 20 mM) and to nitrite (up to 13 mM) and was active at lower cell densities. Anammox activity was observed only between pH 6.5 and 9, with an optimum at pH 8 and a temperature optimum at 37 degrees C. Hydroxylamine and hydrazine, which are intermediates of the anammox reaction of Candidatus B. anammoxidans, were utilized by the Kölliken organisms, and approximately 15% of the nitrite utilized during autotrophic growth was converted to nitrate. Electron microscopy showed a protein-rich region in the center of the cells surrounded by a doughnut-shaped region containing ribosomes and DNA. This doughnut-shape region was observed with FISH as having a higher fluorescence intensity. Similar to Candidatus B. anammoxidans, the Kölliken anammox organism typically formed homogenous clusters containing up to several hundred cells within an extracellular matrix.

Bacteria↗
PubMed2001

Heavy metal removal with Mexican clinoptilolite: multi-component ionic exchange.

This paper describes the interactions of Pb(II), Cd(II), and Cr(VI) competing for ion-exchange sites in naturally occurring clinoptilolite. Dissolved Pb and Cd were effectively removed within 18 h in batch reactors, with higher removal efficiencies (> 95%) in the acidic pH range. The presence of Cr(VI), which can interact with these metals to form anionic complexes, significantly diminished the Pb and Cd removal efficiencies. A decrease in the efficiency of clinoptilolite to remove Pb was also observed in the high (> or = 10) pH range. This was attributed to the formation of anionic hydroxo-complexes with little affinity for cationic ion exchange sites. Pb outcompeted Cd for ion exchange sites in a flow-through column packed with clinoptilolite (contact time = 10 s). The preferential removal of Pb in column, but not in batch reactors, reflects that competitive retention can be affected by contact time because diffusion kinetics may influence the removal efficiency to a greater extent than equilibrium partitioning. Phenol, which was tested as a representative organic co-contaminant, slightly hindered heavy metal removal in batch reactors. This was attributed to the formation of organometallic complexes that cannot penetrate the zeolite exchange channels. Altogether, these results show that natural zeolites hold great potential to remove cationic heavy metal species from industrial wastewater. Nevertheless, process efficiency can be hindered by the presence of ligands that form complexes with reduced accessibility and/or affinity for ion exchange.

Cadmium↗
PubMed2001

Biodegradation of 1,4-dioxane in planted and unplanted soil: effect of bioaugmentation with Amycolata sp. CB1190.

1,4-Dioxane is one of the most recalcitrant and toxic contaminants in the subsurface. This study investigated the potential to enhance dioxane biodegradation in both planted and unplanted soil, by adding the dioxane-degrading actinomycete, Amycolata sp. CB1190. Dioxane was not removed within 120 days in sterile controls or in viable microcosms not amended with CB 1190. Poplar root extract (40 mg/L as COD) stimulated dioxane degradation in bioaugmented soil, and 100 mg/L dioxane were removed within 45 days. Other co-substrates that enhanced dioxane degradation by CB1190 include tetrahydrofuran (THF) and 1-butanol, while glucose and soil extract did not affect dioxane degradation. The stimulatory effect of THF was partly due to enhanced enzyme induction, while that of root extract and 1-butanol was attributed to additional growth of CB1190. In another experiment with dioxane added at 10 mg/kg-soil. reactors planted with hybrid poplar trees removed (by evapotranspiration and biodegradation in the root zone) more dioxane within 26 days than unplanted reactors, regardless of whether CB1190 was added. Nevertheless, CB1190 enhanced mineralization of [14C]-dioxane in all experiments. This enhancement was more pronounced in unplanted soil because plant uptake reduced the availability of dioxane for microbial degradation. These results suggest that bioaugmented phytoremediation is an attractive alternative to remove dioxane from shallow contaminated sites.

Actinomycetales↗
PubMed2001

PCB biodegradation in aged contaminated soil: interactions between exogenous Phanerochaete chrysosporium and indigenous microorganisms.

This work investigated whether the interaction between the white-rot fungus Phanerochaete chrysosporium and indigenous microorganisms could enhance polychlorinated biphenyl (PCB) removal from historically contaminated soil in aerobic microcosms. The PCB mixture was composed mainly of 14% tri-, 20% tetra-, 9% penta-, 17% hexa-, 26% hepta-, 11% octa-, and 3% nona-chlorobiphenyl (CB) congeners, determined by GC/MS. The fungus, which was grown on sugarcane bagasse and added via this solid substrate, successfully colonized the contaminated soil. The added fungi and the indigenous soil community biodegraded most PCB congeners, with removing efficiencies ranging from 13% to 100% for the 45-day incubation period. The interaction between the fungus and the microorganisms present in the added bagasse inhibited both heterotrophic activity (measured by CO2 evolution) and PCB degradation, suggesting a possible antagonism. In contrast, analysis of variance (ANOVA) inferred a synergistic effect between fungus and soil microorganisms, which resulted in a heterotrophic activity above 2.5 mg-CO2/g-initial dry matter/day. The statistical analyses also showed that the presence of fungus alone was particularly beneficial for the removal of penta- and hepta-CB.

Biodegradation, Environmental↗
PubMed2001

RDX degradation using an integrated Fe(0)-microbial treatment approach.

RDX is a persistent and highly mobile groundwater contaminant that represents a major remediation challenge at numerous munitions manufacturing and load-assemblage-package facilities. This work presents proof of concept that permeable reactive iron barriers might be a viable approach to intercept and degrade RDX plumes. Specifically, RDX was rapidly reduced in aquifier microcosms amended with Fe(0) powder, and in flow-through columns packed with steel wool. The rate and extent of RDX degradation in microcosms was enhanced by anaerobic bacteria that feed on cathodic hydrogen (i.e., H2 produced during anaerobic Fe(0) corrosion by water). Apparently, the hydrogenotrophic consortium that exploits Fe(0) corrosion as a metabolic niche participated in the further degradation of heterocyclic intermediates produced by the reaction of RDX with Fe(0). Reductive treatment of RDX with Fe(0) also reduced its toxicity to microorganisms and enhanced its subsequent biodegradability under either anaerobic or anaerobic conditions. Therefore, a combined or sequential Fe(0)-biological treatment approach might improve treatment efficiency.

Bacteria, Anaerobic↗
PubMed2000

Phospholipid compositional changes of five pseudomonad archetypes grown with and without toluene.

Bacterial physiological responses to toluene exposure were investigated in five reference pseudomonad strains that express different toluene degradation pathways: Pseudomonas putida mt-2, Pseudomonas putida F1, Burkholderia cepacia G4, Burkholderia pickettii PKO1, and Pseudomonas mendocina KR1. The intact phospholipids of these archetypes, grown with and without toluene, were characterized using liquid chromatography/electrospray ionization/mass spectrometry. All strains showed significant changes in phospholipid content and composition as an adaptive response to toluene exposure, as well as considerable diversity in response mechanisms. For example, the phospholipid content of toluene-grown PKO1, F1, and KR1 were 10.9-34.7% of that found in succinate-grown strains, while the phospholipid content of mt-2 and G4 increased by 56% and 94%, respectively, when grown on toluene. In addition, PKO1, F1, and mt-2 responded to the presence of toluene by synthesizing more phosphatidylglycerol, whereas G4 and KR1 synthesized phospholipids with polyunsaturated fatty acids (C18:2) on one or both of the sn-2 positions. These changes in phospholipid composition and concentration probably reflect the sensitivity and degree of tolerance of these strains to toluene, and suggest that different mechanisms are utilized by dissimilar bacteria to maintain optimal lipid ordering in the presence of such environmental pollutants.

Burkholderia↗
PubMed2000

Chemistry and microbiology of permeable reactive barriers for in situ groundwater clean up.

Permeable reactive barriers (PRBs) are receiving a great deal of attention as an innovative, cost-effective technology for in situ clean up of groundwater contamination. A wide variety of materials are being proposed for use in PRBs, including zero-valent metals (e.g., iron metal), humic materials, oxides, surfactant-modified zeolites (SMZs), and oxygen- and nitrate-releasing compounds. PRB materials remove dissolved groundwater contaminants by immobilization within the barrier or transformation to less harmful products. The primary removal processes include: (1) sorption and precipitation, (2) chemical reaction, and (3) biologically mediated reactions. This article presents an overview of the mechanisms and factors controlling these individual processes and discusses the implications for the feasibility and long-term effectiveness of PRB technologies.

Absorption↗
PubMed1999

Diversity and correlation of specific aromatic hydrocarbon biodegradation capabilities.

This work investigated the biodegradation capabilities of indigenous microorganisms exposed to different combinations of aromatic hydrocarbons. Considerable diversity was found in the catabolic specificity of 55 strains. Toluene was the most commonly degraded compound, followed by p-xylene, m-xylene and ethylbenzene. Strains capable of degrading o-xylene and benzene, which were the least-frequently-degraded compounds, exhibited broader biodegradation capabilities. Kappa statistics showed a significant correlation between the abilities to degrade toluene and ethylbenzene, p-xylene and m-xylene, and p-xylene and o-xylene. The ability to degrade naphthalene was correlated to the ability to degrade other alkylbenzenes, but not benzene. In addition, the inability to degrade benzene was correlated to the inability to degrade o-xylene. Factorial analysis of variance showed that biodegradation capabilities were generally broader when aromatic hydrocarbons were fed as mixtures than when fed separately. Beneficial substrate interactions included enhanced degradation of benzene, p-xylene, and naphthalene when toluene was present, and enhanced degradation of naphthalene by ethylbenzene. Such heuristic relationships may be useful to predict biodegradation patterns when bacteria are exposed to different aromatic hydrocarbon mixtures.

Bacteria↗
PubMed1991

Kinetics of aerobic biodegradation of benzene and toluene in sandy aquifer material.

Monod's equation adequately described aerobic biodegradation rates of benzene and toluene by the microbial population of a sandy aquifer when these compounds were initially present at concentrations lower than 100 mg/l each. Concentrations higher than 100 mg/l were inhibitory, and no benzene or toluene degradation was observed when these compounds were initially present at 250 mg/l each. The Monod coefficients were calculated as k = 8.3 g-benzene/g-cells/day and Ks = 12.2 mg/l for benzene, and k = 9.9 g-toluene/g-cells/day and Ks = 17.4 mg/l for toluene. Specific first-order coefficients would be 0.68 l/mg.day for benzene and 0.57 l.mg.day for toluene.

Aerobiosis↗
PubMed1991

Substrate interactions of benzene, toluene, and para-xylene during microbial degradation by pure cultures and mixed culture aquifer slurries.

Benzene, toluene, and p-xylene (BTX) were degraded by indigenous mixed cultures in sandy aquifer material and by two pure cultures isolated from the same site. Although BTX compounds have a similar chemical structure, the fate of individual BTX compounds differed when the compounds were fed to each pure culture and mixed culture aquifer slurries. The identification of substrate interactions aided the understanding of this behavior. Beneficial substrate interactions included enhanced degradation of benzene and p-xylene by the presence of toluene in Pseudomonas sp. strain CFS-215 incubations, as well as benzene-dependent degradation of toluene and p-xylene by Arthrobacter sp. strain HCB. Detrimental substrate interactions included retardation in benzene and toluene degradation by the presence of p-xylene in both aquifer slurries and Pseudomonas incubations. The catabolic diversity of microbes in the environment precludes generalizations about the capacity of individual BTX compounds to enhance or inhibit the degradation of other BTX compounds.

Arthrobacter↗