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Biomedical subjects

P M Sloot

Publications and source records attributed to P M Sloot.

11 recordsLinked to original sources

Morphological models of radiate accretive growth and the influence of hydrodynamics.

In many marine sessile organisms (for example sponges and stony corals) the skeleton is formed by an accretive growth process, where layers of material are secreted on top of each other in a surface normal deposition process. In many of these organisms the growth process exhibits a strong morphological plasticity due to differences in exposure to water movement. In general, many of these organisms tend to form thin-branching growth forms under sheltered conditions, while the growth form gradually transforms into a more compact shape when the exposure of water movement increases. In this paper, we investigate this phenomenon by combining a three-dimensional simulation model of radiate accretive growth driven by the local availability of simulated food particles and a model, based on the lattice Boltzmann method, for simulating food particle distributions caused by a combination of flow and diffusion. In the simulations two different models of a suspension feeder with accretive growth were compared. In the first model, the deposition process is exclusively driven by the local availability of food particles, in the second model the deposition process was determined by the combination of local amount of contact to the environment and availability of food particles. In the simulations it was found that hydrodynamics has a strong impact on the overall morphologies which develop in the accretive growth process. In the model exclusively driven by the local availability of food particles, column-shaped objects emerged under diffusion conditions, while more spherical and lobed object were found for the flow-dominated case. In the simulations, the Péclet number was varied independently from the Reynolds number, which was kept at a relatively low constant value. In a range of increasing Péclet numbers, indicating an increasing influence of hydrodynamics, the simulated morphologies gradually transformed from thin-branching ones into more spherical and compact morphologies in the model where deposition was controlled by the local availability of food particles and the local amount of contact with the environment.

Animal Nutritional Physiological Phenomena↗

Radiation forces in the discrete-dipole approximation.

The theory of the discrete-dipole approximation (DDA) for light scattering is extended to allow for the calculation of radiation forces on each dipole in the DDA model. Starting with the theory of Draine and Weingartner [Astrophys. J. 470, 551 (1996)] we derive an expression for the radiation force on each dipole. These expressions are reformulated into discrete convolutions, allowing for an efficient, O(N logN) evaluation of the forces. The total radiation pressure on the particle is obtained by summation of the individual forces. The theory is tested on spherical particles. The resulting accumulated radiation forces are compared with Mie theory. The accuracy is within the order of a few percent, i.e., comparable with that obtained for extinction cross sections calculated with the DDA.

Journal Article↗

Parallel simulation of accretive growth and form in three dimensions.

A geometric model for diffusion-limited radiate accretive growth is used to simulate the emergence of growth and form of a certain class of organisms and crystals. In the model, layered structures are generated by the construction of new layers on top of the previous ones, the local growth velocities are determined by the local nutrient concentration gradients. The simulation of nutrient-limited growth in three dimensions (3D) is computationally very expensive. This paper presents a methodology to formulate the geometrical problem in terms of a 3D Laplace solver and maps this solver on a parallel platform. The aim of this paper is to demonstrate that this hybrid method is capable of simulating two typical properties of radiate accretive growth: (1) the indeterminateness of the growth process; and (2) the strong impact of the physical environment on the growth process.

Animals↗

Lissajous-like patterns in scatter plots of calibration beads.

Flow cytometric measurements of light scattering of polystyrene calibration beads revealed remarkable Lissajous-like loops in two-parameter scatter plots. The existence of such loops is shown to be in qualitative agreement with Lorenz-Mie scattering theory of homogeneous spheres. The occurrence of these patterns reflects the extreme particle size dependency of perpendicular light scattering of homogeneous spheres. These effects may give an explanation for the frequently observed phenomenon that polystyrene spheres reveal a relatively large CV in the perpendicular light scattering signals, whereas the CV of the forward light scattering signal is small. We conclude that one should be careful to optimize the perpendicular light scattering channel by minimizing the CV, because there is no linear relationship between instrument alignment quality and the CV of the perpendicular light scattering signals of calibration beads.

Calibration↗

Effect of aniosmotic media on the volume of the T-lymphocyte nucleus.

Time-resolved measurements of the nuclear volume response of human peripheral T-lymphocytes, under aniosmotic conditions, are presented. In the experiments slit scanning FlowCytometry methods were used. We propose an extension to the standard solid viscoelastic model to interpret the observed dynamical behavior of the nucleus. It is shown that experimental and theoretical evidence indicates a passive nuclear response merely induced by a mechanical link (i.e., the cytoskeleton) between the cell membrane and the nuclear envelope. Implications of this work to the field of cellular mechanics and cytoskeletal rheology are surveyed.

Cell Nucleus↗

Ternary representation of trivariate data.

A new fast trivariate display technique based on the ratio of three measured variables and of relative cell number, obtained from flow cytometric measurements, is described.

Data Interpretation, Statistical↗

Osmotic response of lymphocytes measured by means of forward light scattering: theoretical considerations.

Recent data provide solid experimental evidence that increase in cell size of human lymphocytes, caused by osmotic stress, is not directly proportional to forward scattering intensity but rather is inversely proportional. Here, we provide arguments that this phenomenon can be quantitatively explained by means of a model based on a modified Rayleigh-Debye-Gans theory. As a consequence, the current view that forward scattering intensities can be used as a measure of gross cell size needs to be reconsidered. In addition, we postulate that structural changes of the cytoplasm, imposed by an osmotic stress, reflect corresponding changes in the nucleus.

Flow Cytometry↗

Spectral analysis of flow cytometric data: design of a special-purpose low-pass digital filter.

Spectral decomposition of flow cytometric datafiles of arbitrary dimension reveal information of both the signal and the noise components that constitute the histograms. This spectral information is used to construct a low-pass digital filter, which removes the high-frequency noise from the actual data. It is shown that this procedure guarantees non-trivial smoothing of the flow cytometric data in accordance with the local experimental situation. As a consequence optimal reconstruction of the signal is possible, which facilitates unambiguous interpretation of the data files and mathematical estimation of the statistical parameters.

Flow Cytometry↗

Computer-assisted centrifugal elutriation. I. Detection system and data acquisition equipment.

To optimize cell separations by centrifugal elutriation, we constructed an on-line computer-controlled multiparametric light-scatter system. A bypass sample flow, at the outlet of an elutriation rotor, is hydrofocussed and three scatter parameters of each cell are determined up to a maximum of 15,000 cells/second. The 18-bit representation of the parameter values are cumulatively stored by means of a direct memory access interface. The histogram memory is continuously displayed to provide information on the number and type of cells that are elutriated. A special purpose operating system, implemented on a stand-alone computer configuration, allows a high data-acquisition rate and ample data processing capacity. In addition, a local network driver was constructed to facilitate off-line detailed analysis of the data. The equipment is well suited to monitor the centrigural elutriation process. The flexibility of the system allows an extension of the monitor to computer-controlled elutriation.

Animals↗