Biomedical subjects

P Scheier

Publications and source records attributed to P Scheier.

At least 19 recordsLinked to original sources

PubMed2006

High resolution dissociative electron attachment to gas phase adenine.

The dissociative electron attachment to the gas phase nucleobase adenine is studied using two different experiments. A double focusing sector field mass spectrometer is utilized for measurements requiring high mass resolution, high sensitivity, and relative ion yields for all the fragment anions and a hemispherical electron monochromator instrument for high electron energy resolution. The negative ion mass spectra are discussed at two different electron energies of 2 and 6 eV. In contrast to previous gas phase studies a number of new negative ions are discovered in the mass spectra. The ion efficiency curves for the negative ions of adenine are measured for the electron energy range from about 0 to 15 eV with an electron energy resolution of about 100 meV. The total anion yield derived via the summation of all measured fragment anions is compared with the total cross section for negative ion formation measured recently without mass spectrometry. For adenine the shape of the two cross section curves agrees well, taking into account the different electron energy resolutions; however, for thymine some peculiar differences are observed.

Adenine↗

PubMed2006

Cross sections and ion kinetic energy analysis for the electron impact ionization of acetylene.

Using a Nier-type electron impact ion source in combination with a double focusing two sector field mass spectrometer, partial cross sections for electron impact ionization of acetylene are measured for electron energies up to 1000 eV. Discrimination factors for ions are determined using the deflection field method in combination with a three-dimensional ion trajectory simulation of ions produced in the ion source. Analysis of the ion yield curves obtained by scanning the deflectors allows the assignment of ions with the same mass-to-charge ratio to specific production channels on the basis of their different kinetic energy distributions. This analysis also allows to determine, besides kinetic energy distributions of fragment ions, partial cross sections differential in kinetic energy. Moreover a charge separation reaction, the Coulomb explosion of the doubly charged parent ions C2H2++ into the fragment ions C2H+ and H+, is investigated and its mean kinetic energy release (KER=3.88 eV) is deduced.

Journal Article↗

PubMed2006

Electron attachment to POCl3: measurement and theoretical analysis of rate constants and branching ratios as a function of gas pressure and temperature, electron temperature, and electron energy.

Two experimental techniques, electron swarm and electron beam, have been applied to the problem of electron attachment to POCl3, with results indicating that there is a competition between dissociation of the resonant POCl3-* state and collisional stabilization of the parent anion. In the electron beam experiment at zero electron energy, the fragment ion POCl2- is the dominant ion product of attachment (96%), under single-collision conditions. Small amounts (approximately 2% each) of POCl3- and Cl- were observed. POCl3- and POCl2- ion products were observed only at zero electron energy, but higher-energy resonances were recorded for POCl-, Cl-, and Cl2- ion products. In the electron swarm experiment, which was carried out in 0.4-7 Torr of He buffer gas, the parent anion branching ratio increased significantly with pressure and decreased with temperature. The electron attachment rate constant at 297 K was measured to be (2.5+/-0.6)x10(-7) cm3 s(-1), with ion products POCl2- (71%) and POCl3- (29%) in 1 Torr of He gas. The rate constant decreased as the electron temperature was increased above 1500 K. Theory is developed for (a) the unimolecular dissociation of the nascent POCl3-* and (b) a stepladder collisional stabilization mechanism using the average energy transferred per collision as a parameter. These ideas were then used to model the experimental data. The modeling showed that D0 o(Cl-POCl2-) and EA(POCl3) must be the same within +/-0.03 eV.

Journal Article↗

PubMed2006

Vibrational Feshbach resonances in uracil and thymine.

Sharp peaks in the dissociative electron attachment (DEA) cross sections of uracil and thymine at energies below 3 eV are assigned to vibrational Feshbach resonances (VFRs) arising from coupling between the dipole bound state and the temporary anion state associated with occupation of the lowest sigma* orbital. Three distinct vibrational modes are identified, and their presence as VFRs is consistent with the amplitudes and bonding characteristics of the sigma* orbital wave function. A deconvolution method is also employed to yield higher effective energy resolution in the DEA spectra. The site dependence of DEA cross sections is evaluated using methyl substituted uracil and thymine to block H atom loss selectively. Implications for the broader issue of DNA damage are briefly discussed.

Base Composition↗

PubMed2006

Electron-impact ionization of helium clusters close to the threshold: appearance energies.

We have investigated the ionization threshold behavior of small helium cluster ions (cluster size n=2-10) formed via electron-impact ionization of neutral helium droplets and derive appearance energies for mass-selected cluster ions using a nonlinear least-square-fitting procedure. Moreover, we report magic numbers in the mass spectrum observed at the electron energy of 70 eV. The apparatus used for the present measurements is a hemispherical electron monochromator combined with a quadrupole mass spectrometer. Our experiment demonstrates that helium clusters are not only exclusively formed via direct ionization above the atomic ionization potential but also indirectly via autoionizing Rydberg states. The present results are compared with previous electron-impact and photoionization results.

Journal Article↗

PubMed2005

Bond selective dissociative electron attachment to thymine.

Free-electron attachment to thymine and partially deuterated thymine, where D replaces H at all carbon atoms, is studied in the electron energy range from about 0 to 15 eV. The formation of fragment anions that are formed by the loss of one or two H (D) atoms is analyzed as a function of the incident electron energy using a crossed electron/neutral beam apparatus in combination with a quadrupole mass spectrometer. By using partially deuterated thymine and quantum-chemical calculation a bond selectivity for the loss of one and two hydrogen atoms is observed that is determined only by the kinetic energy of the incident electron.

Anions↗

PubMed2005

Free-electron attachment to coronene and corannulene in the gas phase.

Electron attachment to the polyaromatic hydrocarbons coronene and corannulene is studied in the electron energy range of about 0-14 eV using a high-resolution crossed electron-neutral beam setup. The major anions observed are the parent anions peaking at about 0 eV with cross sections of 3.8 x 10(-20) and 1 x 10(-19) m(2), respectively. The only fragment anions formed in coronene and corannulene are the dehydrogenated coronene and corannulene anions. Other anions observed in the negative mass spectra at about 0 eV can be ascribed to impurities of the sample. High-level quantum-mechanical studies are carried out for the determination of electron affinities, hydrogen binding energies, and structures of both molecules. The behavior of coronene and corannulene upon electron attachment is compared with that of other polyaromatic hydrocarbons studied previously.

Anions↗

PubMed2005

Ionization energies of argon clusters: a combined experimental and theoretical study.

We have measured appearance energies of Ar(n)+, n<or=30, by electron impact of gas phase clusters. Quantum-chemical calculations have been performed to determine the adiabatic and vertical ionization energies of argon clusters up to n=4 and 6, respectively. The experimental appearance energy of the dimer ion approaches, under suitable cluster source conditions, the adiabatic ionization energy. The agreement with values obtained by photoionization and threshold photoelectron-photoion coincidence (TPEPICO) spectra demonstrates that autoionizing Rydberg states are accessible by electron impact. Appearance energies of larger clusters, though, exceed the TPEPICO values by about 0.5 eV.

Journal Article↗

PubMed2004

Dissociative electron attachment to dinitrogen pentoxide, N2O5.

Electron attachment was studied in gaseous dinitrogen pentoxide, N(2)O(5), for incident electron energies between a few meV and 10 eV. No stable parent anion N(2)O(5) (-) was observed but several anionic fragments (NO(3) (-), NO(2) (-), NO(-), O(-), and O(2) (-)) were detected using quadrupole mass spectrometry. Many of these dissociative pathways were found to be coupled and provide detailed information on the dynamics of N(2)O(5) fragmentation. Estimates of the cross sections for production of each of the anionic fragments were made and suggest that electron attachment to N(2)O(5) is amongst the most efficient attachment reactions recorded for nonhalogenated polyatomic systems.

Journal Article↗

PubMed2004

Mechanisms and dynamics of the metastable decay in Ar2+.

A detailed experimental as well as theoretical investigation of the properties of the metastable dissociation Ar2+ --> Ar+ + Ar is presented. The mass-analyzed ion kinetic energy (MIKE) scan technique has been performed using a three sector field mass spectrometer. The possible mechanisms of the metastability of Ar2+ have been examined and the observed decay process is assigned to the II(1/2)(u)-->I(1/2)(g) bound to continuum radiative transition, in agreement with earlier work. The calculation of the theoretical shape of the kinetic energy release distribution of fragment ions allowed us to construct the theoretical MIKE peak and compare it with the raw experimental data. The accuracy of various sets of potential energy curves for Ar2+ is discussed, as well as the way of production of the metastable Ar2+[II(1/2)(u)] electronic state by electron impact. Excellent agreement between the experimental data and theoretical model has been observed.

Journal Article↗

PubMed2004

High-resolution kinetic energy release distributions and dissociation energies for fullerene ions Cn+, 42 < or = n < or = 90.

We have measured the kinetic energy released in the unimolecular dissociation of fullerene ions, Cn+ --> C(n-2)+ + C2, for sizes 42 < or = n < or = 90. A three-sector-field mass spectrometer equipped with two electric sectors has been used in order to ensure that contributions from isotopomers of different masses do not distort the experimental kinetic energy release distributions. We apply the concept of microcanonical temperature to derive from these data the dissociation energies of fullerene cations. They are converted to dissociation energies of neutral fullerenes with help of published adiabatic ionization energies. The results are compared with literature values.

Journal Article↗

PubMed2004

The anomalous shape of the cross section for the formation of SF3+ fragment ions produced by electron impact on SF6 revisited.

The partial ionization cross section for the formation of SF(3) (+) fragment ions following electron impact on SF(6) is known to have a pronounced structure in the cross section curve slightly above 40 eV. We used the mass-analyzed ion kinetic energy (MIKE) scan technique to demonstrate the presence of a channel contributing to the SF(3) (+) partial ionization cross section that we attribute to the Coulomb explosion of doubly charged metastable SF(4) (2+) ions into two singly charged ions SF(3) (+) and F(+), with a threshold energy of about 45.5 eV. Thus the observed unusual shape of the SF(3) (+) partial ionization cross section is the result of two contributions, (i) the direct formation of SF(3) (+) fragment ions via dissociative ionization of SF(6) with a threshold energy of 22 eV and (ii) the Coulomb explosion of metastable SF(4) (2+) ions with a threshold energy of about 45.5 eV. A detailed analysis of the MIKE spectrum reveals an average kinetic energy release of about 5 eV in the Coulomb explosion of the SF(4) (2+) ions with evidence of a second channel corresponding to an average kinetic energy release of about 1.1 eV.

Journal Article↗

PubMed2004

Inelastic electron interaction (attachment/ionization) with deoxyribose.

We have investigated experimentally the formation of anions and cations of deoxyribose sugar (C(5)H(10)O(4)) via inelastic electron interaction (attachment/ionization) using a monochromatic electron beam in combination with a quadrupole mass spectrometer. The ion yields were measured as a function of the incident electron energy between about 0 and 20 eV. As in the case of other biomolecules (nucleobases and amino acids), low energy electron attachment leads to destruction of the molecule via dissociative electron attachment reactions. In contrast to the previously investigated biomolecules dehydrogenation is not the predominant reaction channel for deoxyribose; the anion with the highest dissociative electron attachment (DEA) cross section of deoxyribose is formed by the release of neutral particles equal to two water molecules. Moreover, several of the DEA reactions proceed already with "zero energy" incident electrons. In addition, the fragmentation pattern of positively charged ions of deoxyribose also indicates strong decomposition of the molecule by incident electrons. For sugar the relative amount of fragment ions compared to that of the parent cation is about an order of magnitude larger than in the case of nucleobases. We determined an ionization energy value for C(5)H(10)O(4) (+) of 10.51+/-0.11 eV, which is in good agreement with ab initio calculations. For the fragment ion C(5)H(6)O(2) (+) we obtained a threshold energy lower than the ionization energy of the parent molecular ion. All of these results have important bearing for the question of what happens in exposure of living tissue to ionizing radiation. Energy deposition into irradiated cells produces electrons as the dominant secondary species. At an early time after irradiation these electrons exist as ballistic electrons with an initial energy distribution up to several tens of electron volts. It is just this energy regime for which we find in the present study rather characteristic differences in the outcome of electron interaction with the deoxyribose molecule compared to other nucleobases (studied earlier). Therefore, damage induced by these electrons to the DNA or RNA strands may start preferentially at the ribose backbone. In turn, damaged deoxyribose is known as a key intermediate in producing strand breaks, which are the most severe form of lesion in radiation damage to DNA and lead subsequently to cell death.

Anions↗

PubMed2004

Electron attachment to gas-phase uracil.

We present results about dissociative electron attachment (DEA) to gas-phase uracil (U) for incident electron energies between 0 and 14 eV using a crossed electron/molecule beam apparatus. The most abundant negative ion formed via DEA is (U-H)-, where the resonance with the highest intensity appears at 1.01 eV. The anion yield of (U-H)- shows a number of peaks, which can be explained in part as being due to the formation of different (U-H)- isomers. Our results are compared with high level ab initio calculations using the G2MP2 method. There was no measurable amount of a parent ion U-. We also report the occurrence of 12 other fragments produced by dissociative electron attachment to uracil but with lower cross sections than (U-H)-. In addition we observed a parasitic contaminating process for conditions where uracil was introduced simultaneously with calibrant gases SF6 and CCl4 that leads to a sharp peak in the (U-H)- cross section close to 0 eV. For (U-H)- and all other fragments we determined rough measures for the absolute partial cross section yielding in the case of (U-H)- a peak value of sigma (at 1.01 eV)=3 x 10(-20) m2.

Algorithms↗

PubMed2004

High resolution measurements of kinetic energy release distributions of neon, argon, and krypton cluster ions using a three sector field mass spectrometer.

Using a newly constructed three sector field mass spectrometer (resulting in a BE1E2 field configuration) we have measured the kinetic energy release distributions of neon, argon, and krypton cluster ions. In the present study we used the first two sectors, B and E1, constituting a high resolution mass spectrometer, to select the parent ions in terms of mass, charge, and energy, and studied the decay of those ions in the third field free region. Due to the improved mass resolution we were able to extend earlier studies carried out with a two sector field machine, where an upper size limit arose from the fact that several isotopomers contribute to a decaying parent ion beam when the cluster size exceeds a certain value. Furthermore we developed a new data analysis. It allows us to model also fragment ion peaks that are a superposition of different decay reactions and thus we can determine the average kinetic energy release for all decay reactions of a given cluster ion. In a further step we used these results to determine the binding energies of cluster ions Rg(n) (n> or =10) by applying finite heat bath theory. The smaller sizes have not been included in this analysis, because the validity of finite heat bath theory becomes questionable below n approximately 10. The present average kinetic energy releases and binding energies are compared with other experiments and various calculations.

Journal Article↗

PubMed2003

Dissociative electron attachment to gas-phase glycine.

By using a high-resolution electron energy monochromator low-energy electron attachment to gas-phase glycine (H2NCH2COOH, or G) has been studied by means of mass spectrometric detection of the product anions. In the same way as for several other biologically relevant molecules no stable parent anion was formed by free electron attachment. The largest dissociative electron attachment (DEA) cross-section, approximately 5x10(-20) m2, was observed for (G-H)-+H at an electron energy of 1.25 eV. Glycine and formic acid (HCOOH) have several common features, because a precursor ion can be characterized by electron attachment to the unoccupied pi* orbital of the -COOH group. At higher incident electron energies several smaller fragment anions are formed. Except for H-, which could not be observed in this study, there was good agreement with an earlier investigation by Gohlke et al.

Journal Article↗

PubMed2003

Probing electronic states of Ne2+ and Ar2+ by measuring kinetic-energy-release distributions.

Dissociative decay of metastable, electronically excited neon and argon dimer ions produces fragment ions with strikingly dissimilar kinetic-energy-release distributions. The distributions have been modeled based on ab initio calculations of potential energy curves. The unusual bimodal distribution observed for dissociation of Ne2+ arises from competition between radiative and nonradiative decay of the long-lived II(1/2)(u) state. For Ar2+, however, electronic predissociation is insignificant.

Journal Article↗

PubMed2003

Electron attachment to uracil: effective destruction at subexcitation energies.

We demonstrate that electrons at energies below the threshold for electronic excitation (<3 eV) effectively decompose gas phase uracil generating a mobile hydrogen radical and the corresponding closed shell uracil fragment anion (U-H)(-). The reaction is energetically driven by the large electron affinity of the (U-H) radical. This observation has significant consequences for the molecular picture of radiation damage, i.e., genotoxic effects or damage of living cells due to the secondary component of high energy radiation.

DNA Damage↗