Biomedical subjects

Per Linse

Publications and source records attributed to Per Linse.

14 recordsLinked to original sources

PubMed2006

Coarse-grained modeling of proline rich protein 1 (PRP-1) in bulk solution and adsorbed to a negatively charged surface.

Structural properties of the acidic proline rich protein PRP-1 of salivary origin in bulk solution and adsorbed onto a negatively charged surface have been studied by Monte Carlo simulations. A simple model system with focus on electrostatic interactions and short-ranged attractions among the uncharged amino acids has been used. In addition to PRP-1, some mutants were considered to assess the role of the interactions in the systems. Contrary to polyelectrolytes, the protein has a compact structure in salt-free bulk solutions, whereas at high salt concentration the protein becomes more extended. The protein adsorbs to a negatively charged surface, although its net charge is negative. The adsorbed protein displays an extended structure, which becomes more compact upon addition of salt. Hence, the conformational response upon salt addition in the adsorbed state is the opposite as compared to that in bulk solution. The conformational behavior of PRP-1 in bulk solution and at charged surfaces as well as its propensity to adsorb to surfaces with the same net charge are rationalized by the block polyampholytic character of the protein. The presence of a triad of positively charged amino acids in the C-terminal was found to be important for the adsorption of the protein.

Adsorption↗

PubMed2006

Effective interaction potentials for alkali and alkaline earth metal ions in SPC/E water and prediction of mean ion activity coefficients.

The potential of mean force (PMF) acting between two simple ions surrounded by SPC/E water have been determined by molecular dynamics (MD) simulations using a spherical cavity approach. Such effective ion-ion potentials were obtained for Me-Me, Me-Cl-, and Cl(-)-Cl- pairs, where Me is a Li+, Na+, K+, Mg2+, Ca2+, Sr2+, and Ba2+ cation. The ionic sizes estimated from the effective potentials are not pairwise additive, a feature in the frequently used primitive model for electrolytes. The effective potentials were used in Monte Carlo (MC) simulations with implicit water to calculate mean ion activity coefficients of LiCl, NaCl, KCl, MgCl2, CaCl2, SrCl2, and BaCl2. Predicted activities were compared with experimental ones in the electrolyte concentration range 0.1-1 M. A qualitative agreement for LiCl and a satisfactory agreement for NaCl were found, whereas the predictions for KCl by two K+ models were less coherent. In the case of alkaline earth metal ions, all experimental activities were successfully reproduced at c = 0.1 M. However, at higher concentrations, similar deviations occurred for all divalent cations, suggesting that the dependence of the permittivity on the salt concentration and the polarization deficiency arising from the ordering of water molecules in the ion hydration shells are important in such systems.

Cations, Divalent↗

PubMed2006

Monte Carlo simulations of the hydrophobic effect in aqueous electrolyte solutions.

The hydrophobic interaction between two methane molecules in salt-free and high salt-containing aqueous solutions and the structure in such solutions have been investigated using an atomistic model solved by Monte Carlo simulations. Monovalent salt representing NaCl and divalent salt with the same nonelectrostatic properties as the monovalent salt have been used to examine the influence of the valence of the salt species. In salt-free solution the effective interaction between the two methane molecules displayed a global minimum at close contact of the two methane molecules and a solvent-separated secondary minimum. In 3 and 5 M monovalent salt solution the potential of mean force became slightly more attractive, and in a 3 M divalent salt solution the attraction became considerably stronger. The structure of the aqueous solutions was determined by radial distribution functions and angular probability functions. The distortion of the native water structure increased with ion valence. The increase of the hydrophobic attraction was associated with (i) a breakdown of the tetrahedral structure formed by neighboring water molecules and of the hydrogen bonds between them and (i) the concomitant increase of the solution density.

Electrolytes↗

PubMed2006

Monte Carlo simulations of polyelectrolytes inside viral capsids.

Structural features of polyelectrolytes as single-stranded RNA or double-stranded DNA confined inside viral capsids and the thermodynamics of the encapsidation of the polyelectrolyte into the viral capsid have been examined for various polyelectrolyte lengths by using a coarse-grained model solved by Monte Carlo simulations. The capsid was modeled as a spherical shell with embedded charges and the genome as a linear jointed chain of oppositely charged beads, and their sizes corresponded to those of a scaled-down T=3 virus. Counterions were explicitly included, but no salt was added. The encapisdated chain was found to be predominantly located at the inner capsid surface, in a disordered manner for flexible chains and in a spool-like structure for stiff chains. The distribution of the small ions was strongly dependent on the polyelectrolyte-capsid charge ratio. The encapsidation enthalpy was negative and its magnitude decreased with increasing polyelectrolyte length, whereas the encapsidation entropy displayed a maximum when the capsid and polyelectrolyte had equal absolute charge. The encapsidation process remained thermodynamically favorable for genome charges ca. 3.5 times the capsid charge. The chain stiffness had only a relatively weak effect on the thermodynamics of the encapsidation.

Capsid↗

PubMed2006

Monte Carlo simulations of cross-linked polyelectrolyte gels with oppositely charged macroions.

The volume and structural changes upon replacement of oppositely charged network counterions for oppositely charged macroions in cross-linked polyelectrolyte gels have been investigated by Monte Carlo simulations using a coarse-grained model. Initially, the gel deswells, but after an approximately equivalent amount of macroions, the gel starts to swell again. The deswelling effect is greatest for small and highly charged macroions. The role of different network properties on the deswelling has also been examined. The initial deswelling is understood in terms of a replacement of confined counterions with macroions, thereby reducing the osmotic pressure originating from the counterions. At these conditions, macroions are located near network nodes with various degrees of network chains wrapping them. At charge equivalence, a profound change in the network structure has appeared. At these conditions, the cohesive electrostatic interaction and the excluded volume effect of the macroions strongly influence the equilibrium volume of the gel. Our model system reproduces many characteristic experimental observations of polyelectrolyte gels containing oppositely charged surfactants.

Journal Article↗

PubMed2006

Simulation of grafted polymers on nanopatterned surfaces.

Structural properties of polymer brushes on nanopatterned surfaces in good solvent have been determined by computer simulations. Scaling relations for the brush height and brush width are proposed. The properties of the central part of the patterned brush remain constant as long as the pattern is wider than a few times the brush height. The results agree qualitatively with recent AFM experiments, but some quantitative differences call for a reassessment of experimental procedures.

Journal Article↗

PubMed2005

Influence of added particles on the phase behavior of polymer solutions. Analysis by mean-field lattice theory.

The influence of added colloidal particles on the phase stability of polymer solutions is investigated theoretically. The polymer has an affinity to the particle surface. A mean-field lattice theory based on the Flory-Huggins theory is used to calculate the phase behavior in solutions containing a single polymer component and particles. The particles are described in two different ways. The first approach considers the surface free energy associated with added solid particles and the mixing entropy of the particles. In the second approach, the particles are simply modeled as large polymers. Both ways of describing the added particles show that the added particles decrease the stability of the polymer solution when the polymer-particle attraction is strong. A higher particle concentration enhances the effect. Experiments where polystyrene latex particles are added at different concentrations to aqueous dispersions of ethyl(hydroxyethyl)cellulose (EHEC) support the theoretical findings.

Journal Article↗

PubMed2005

Effect of discrete macroion charge distributions in solutions of like-charged macroions.

The effect of replacing the conventional uniform macroion surface charge density with discrete macroion charge distributions on structural properties of aqueous solutions of like-charged macroions has been investigated by Monte Carlo simulations. Two discrete charge distributions have been considered: point charges localized on the macroion surface and finite-sized charges protruding into the solution. Both discrete charge distributions have been examined with fixed and mobile macroion charges. Different boundary conditions have been applied to examine various properties. With point charges localized on the macroion surface, counterions become stronger accumulated to the macroion and the effect increases with counterion valence. As a consequence, with mono- and divalent counterions the potential of mean force between two macroions becomes less repulsive and with trivalent counterions more attractive. With protruding charges, the excluded volume effect dominates over the increased correlation ability; hence the counterions are less accumulated near the macroions and the potential of mean force between two macroions becomes more repulsive/less attractive.

Journal Article↗

PubMed2005

Structure and thermodynamics of protein-polymer solutions: effects of spatially distributed hydrophobic surface residues.

Protein-polymer association in solution driven by a short-range attraction has been investigated using a simple coarse-grain model solved by Monte Carlo simulations. The effect of the spatial distribution of the hydrophobic surface residues of the protein on the adsorption of weakly hydrophobic polymers at variable polymer concentration, polymer length, and polymer stiffness has been considered. Structural data on the adsorbed polymer layer and thermodynamic properties, such as the free energy, energy, and entropy, related to the protein-polymer interaction were calculated. It was found that a more heterogeneous distribution of the surface residues promotes adsorption and that this also applies for different polymer concentrations, polymer chain lengths, and polymer flexibilities. Furthermore, the polymer adsorption onto proteins with more homogeneous surface distributions displayed larger sensitivity to polymer properties such as chain length and flexibility. Finally, a simple relation between the adsorption probability and the change in the free energy was found and rationalized by a simple two-state adsorption model.

Adsorption↗

PubMed2005

Monte Carlo simulations of oppositely charged macroions in solution.

The structure and phase behavior of oppositely charged macroions in solution have been studied with Monte Carlo simulations using the primitive model where the macroions and small ions are described as charged hard spheres. Size and charge symmetric, size asymmetric, and charge asymmetric macroions at different electrostatic coupling strengths are considered, and the properties of the solutions have been examined using cluster size distribution functions, structure factors, and radial distribution functions. At increasing electrostatic coupling, the macroions form clusters and eventually the system displays a phase instability, in analogy to that of simple electrolyte solutions. The relation to the similar cluster formation and phase instability occurring in solutions containing oppositely charged polymers is also discussed.

Journal Article↗

PubMed2004

Diblock polyampholytes grafted onto spherical particles: Monte Carlo simulation and lattice mean-field theory.

Spherical brushes composed of diblock polyampholytes (diblock copolymers with oppositely charged blocks) grafted onto solid spherical particles in aqueous solution are investigated by using the primitive model solved with Monte Carlo simulations and by lattice mean-field theory. Polyampholyte chains of two compositions are considered: a copolymer with a long and a short block, A100B10, and a copolymer with two blocks of equal length, A50B50. The B block is end-grafted onto the surface, and its charge is varied, whereas the charge of the A block is fixed. Single-chain properties, radial and lateral spatial distributions of different types, and structure factors are analyzed. The brush structure strongly depends on the charge of the B block. In the limit of an uncharged B block, the chains are stretched and form an extended polyelectrolyte brush. In the other limit with the charges of the blocks compensating each other, the chains are collapsed and form a polyelectrolyte complex surrounding the particles. At intermediate charge conditions, a polyelectrolyte brush and a polyelectrolyte complex coexist and constitute two substructures of the spherical brush. The differences of the brush structures formed by the A100B10 and A50B50 polyampholytes are also analyzed. Finally, a comparison of the predictions of the two theoretical approaches is made.

Journal Article↗

PubMed2004

Structure of polymer-stabilized magnetic fluids: small-angle neutron scattering and mean-field lattice modeling.

Small-angle neutron scattering and mean-field lattice modeling were used to characterize a class of water-based magnetic fluids tailored specifically to extract soluble organic compounds from water. The fluids consist of a suspension of approximately 7 nm magnetite (Fe3O4) nanoparticles coated with a bifunctional polymer layer comprised of an outer hydrophilic poly(ethylene oxide) (PEO) region for colloidal stability and an inner hydrophobic poly(propylene oxide) (PPO) region for solubilization of organic compounds. The inner region of the polymer shell is increasingly depleted of water as the fraction of PPO side chains increases. The incorporation of PPO side chains also leads to a small increase in interparticle attraction. The lattice model predicted a shell structure similar to that of a PEO-PPO-PEO triblock copolymer (Pluronic) micelle, with equivalent levels of hydration but with more PEO present in the PPO-rich regions, as the side chains grafted to the surface are less able to segregate than when in free micellar systems.

Journal Article↗

PubMed2003

Protein-polyelectrolyte cluster formation and redissolution: a Monte Carlo study.

Aqueous solutions of proteins and oppositely charged polyelectrolytes were studied at different polyelectrolyte chain length, ionic strength, and protein-protein interaction potential as a function of the polyelectrolyte concentration. One of the protein models used represented lysozyme in aqueous environment. The model systems were solved by Monte Carlo simulations, and their properties were analyzed in terms of radial distribution functions, structure factors, and cluster composition probabilities. In the system with the strongest electrostatic protein-polyelectrolyte interaction the largest clusters were formed near or at equivalent amount of net protein charge and polyelectrolyte charge, whereas in excess of polyelectrolyte a redissolution appeared. Shorter polyelectrolyte chains and increased ionic strength lead to weaker cluster formation. An inclusion of nonelectrostatic protein-protein attraction promoted the protein-polyelectrolyte cluster formation.

Cluster Analysis↗

PubMed2002

Dissolution of a polyelectrolyte-macroion complex by addition of salt.

The dissolution of complexes formed by a linear polyelectrolyte and oppositely charged macroions by addition of salt has been examined by employing a simple model with focus on the electrostatic interactions and solved by Monte Carlo simulations. In the absence of salt an overcharged complex appears. Upon addition of salt, the number of complexed macroions is continuously decreasing, the effect being similar for flexible and stiff polyelectrolytes. Regarding the flexible polyelectrolyte, the number of polyelectrolyte-macroion contacts is reduced, whereas it remains nearly constant for the stiff polyelectrolyte as the salt content is increased. A screened Coulomb potential of the Debye-Hückel type, in which the small ions are only indirectly described, displays a good representation of the system.

Journal Article↗