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Peter Comba

Publications and source records attributed to Peter Comba.

At least 19 recordsLinked to original sources
PubMed2006

DFT studies on the magnetic exchange across the cyanide bridge.

Exchange coupling across the cyanide bridge in a series of novel cyanometalate complexes with CuII-NC-MIII (M = Cr and low-spin Mn, Fe) fragments has been studied using the broken-symmetry DFT approach and an empirical model, which allows us to relate the exchange coupling constant with sigma-, pi-, and pi*-type spin densities of the CN- bridging ligand. Ferromagnetic exchange is found to be dominated by pi-delocalization via the CN- pi pathway, whereas spin polarization with participation of sigma orbitals (in examples, where the dz2 orbital of MIII is empty) and pi* orbitals of CN- yields negative spin occupations in these orbitals, and reduces the CuII-MIII exchange coupling constant. When the dz2 orbital of MIII is singly occupied, an additional positive spin density appears in the sigma(CN) orbital and leads to an increase of the ferromagnetic Cu-NC-M exchange constant. For low-spin [MIII(CN)6]3- complexes, the dz2 orbital occupancy results in high-spin metastable excited states, and this offers interesting aspects for applications in the area of molecular photomagnetism. The DFT values of the exchange coupling parameters resulting from different occupations of the t2g orbitals of low-spin (t2g5) FeIII are used to discuss the effect of spin-orbit coupling on the isotropic and anisotropic exchange coupling in linear Cu-NC-Fe pairs.

Journal Article↗
PubMed2006

Tuning of inter- versus intrachain magnetic interactions in cyano-bridged Ni(II)/M(III) (M = Cr, Fe, Co) chain complexes.

The reaction of [M(CN)6]3- (M = Cr3+, Fe3+, Co3+) with the nickel(II) complex of 2,4-diamino-1,3,5-triazin-6-yl-{3-(1,3,5,8,12-pentaazacyclotetradecane)} ([NiL]2+) in excess of ANO3 or ACl (A = Li+, Na+, K+, Rb+, Cs+, NH4+) leads to the cyano-bridged dinuclear assemblies A{[NiL][M(CN)6]}.xH2O (x = 2-5). X-ray structures of Li{[NiL][Cr(CN)6]}.5H2O, NH4{[NiL][Cr(CN)6]}.3.5H2O, K{[NiL][Cr(CN)6]}.4H2O, K{[NiL][Fe(CN)6]}.4H2O, Rb{[NiL][Fe(CN)6]}.3.5H2O, and Cs{[NiL][Fe(CN)6]}.3.5H2O, as well as the powder diffractometry of the entire Fe(III) series, are reported. The magnetic properties of the assemblies are dependent on the monocation A and discussed in detail. New efficient pathways for ferromagnetic exchange between Ni(II) and Fe(III) or Cr(III) are demonstrated. Field dependencies of the magnetization for the Fe(III) samples at low temperature and low magnetic field indicate a weak interchain antiferromagnetic coupling, which is switched to ferromagnetic coupling at increasing magnetic field (metamagnetic behavior). The interchain magnetic coupling can be tuned by the size of the A cations.

Journal Article↗
PubMed2006

An examination of the binding behavior of histidine-containing peptides with immobilized metal complexes derived from the macrocyclic ligand, 1,4,7-triazacyclononane.

In this study, two different experimental approaches have been employed to examine the binding behavior of histidine-containing peptides with metal ion complexes derived from the macrocyclic ligand 1,4,7-triazacyclononane (tacn). Firstly, a molecular modeling approach has been employed to derive the strain energies for test peptide sequences that have a predicted propensity to readily adopt an alpha-helical conformation. To this end, binuclear metal complexes were examined with peptides containing two histidine residues in different locations in a pair of peptides of the same composition but different sequence. These modeling results indicate that there are no energetic constraints for two-point binding to occur with dicopper(II) binuclear complexes when two histidine residues are appropriately placed in an alpha-helical conformation. Secondly, binding experiments were carried out to establish the effect of one or more histidine residues within a peptide sequence on the affinity of a peptide for these Cu(II)-tacn derived binuclear complexes when immobilized onto a chromatographic support material. The results confirm that for all chelating systems, higher affinity is achieved as the histidine number in the peptide structure increases, although the relative location of the histidine residues in these small peptides did not introduce a significant constraint to the conformation on interacting with the immobilized Cu(II) binuclear complexes.

Binding Sites↗
PubMed2006

Catecholase activity of dicopper(II)-bispidine complexes: stabilities and structures of intermediates, kinetics and reaction mechanism.

A mechanism for the oxidation of 3,5-di-tert-butylcatechol (dtbc) with dioxygen to the corresponding quinone (dtbq), catalyzed by bispidine-dicopper complexes (bispidines are various mono- and dinucleating derivatives of 3,7-diazabicyclo[3.3.1]nonane with bis-tertiary-amine-bispyridyl or bis-tertiary-amine-trispyridyl donor sets), is proposed on the basis of (1) the stoichiometry of the reaction as well as the stabilities and structures [X-ray, density functional theory (B3LYP, TZV)] of the bispidine-dicopper(II)-3,4,5,6-tetrachlorcatechol intermediates, (2) formation kinetics and structures (molecular mechanics, MOMEC) of the end-on peroxo-dicopper(II) complexes and (3) kinetics of the stoichiometric (anaerobic) and catalytic (aerobic) copper-complex-assisted oxidation of dtbc. This involves (1) the oxidation of the dicopper(I) complexes with dioxygen to the corresponding end-on peroxo-dicopper(II) complexes, (2) coordination of dtbc as a bridging ligand upon liberation of H(2)O(2) and (3) intramolecular electron transfer to produce dtbq, which is liberated, and the dicopper(I) catalyst. Although the bispidine complexes have reactivities comparable to those of recently published catalysts with macrocyclic ligands, which seem to reproduce the enzyme-catalyzed process in various reaction sequences, a strikingly different oxidation mechanism is derived from the bispidine-dicopper-catalyzed reaction.

Bridged Bicyclo Compounds, Heterocyclic↗
PubMed2006

Spin-crossover in an iron(III)-bispidine-alkylperoxide system.

The iron(II) complex of a tetradentate bispidine ligand with two tertiary amines and two pyridine groups (L = dimethyl [3,7-dimethyl-9,9'-dihydroxy-2,4-di-(2-pyridyl)-3,7-diazabicyclo nonan-1,5-dicaboxylate]) is oxidized with tert-butyl hydroperoxide to the corresponding end-on tert-butylperoxo complex [Fe(III)(L)(OOtBu)(X)]n+ (X = solvent, anion). UV-vis, resonance Raman, and EPR spectroscopy, as a function of the solvent, show that this is a spin-crossover compound. The experimentally observed Raman vibrations for both low-spin and high-spin isomers are in good agreement with those computed by DFT.

Bridged Bicyclo Compounds, Heterocyclic↗
PubMed2006

Determination of the solution structures of melamine-based bis- and tris-macrocyclic ligand copper(II) complexes.

A combination of molecular mechanics (MM), electron paramagnetic resonance spectroscopy (EPR), and spectra simulation (MM-EPR) has been used to determine the solution structures of di- and trinuclear copper(II) complexes of melamine-based oligomacrocyclic ligands. The spin Hamiltonian parameters of the mononuclear, melamine-appended macrocyclic ligand copper(II) complex have been determined by EPR spectroscopy and were also studied with DFT methods. These spin Hamiltonian parameters, together with the structural parameters obtained from models optimized with MM, have been used for the simulation of the EPR spectra of the di- and trinuclear complexes. For the dinuclear complex, the syn isomer is preferred over the anti, for which an X-ray structure exists; for the trinuclear complex, the syn,syn isomer is preferred over the syn,anti form. Additional support for these assignments comes from DFT calculations, and this demonstrates that the MM-DFT-EPR method is a reliable approach for the determination of solution structures and for the analysis of spin Hamiltonian parameters of dipolar, coupled transition metal complexes (g and A tensors and J values).

Journal Article↗
PubMed2006

Oxidative N-dealkylation in cobalt-bispidine-H2O2 systems.

The reaction of the Co(II) complex with the rigid bispidine ligand L1 with two tertiary amine and two pyridine donors, [Co(II)(L1)(OH2)2]2+, with H2O2 and O2 produces [Co(II)(L2)(OH2)2]3+, where L2 is demethylated at one of the amine donors, and CH2O.

Bridged Bicyclo Compounds, Heterocyclic↗
PubMed2006

Encapsulation of cyanometalates by a tris-macrocyclic ligand tricopper(II) complex: syntheses, structural variation, and magnetic exchange coupling pathways.

The reaction of [M(CN)(6)](3-) (M = Cr(3+), Mn(3+), Fe(3+), Co(3+)) and [M(CN)(8)](4-/3-) (M = Mo(4+/5+), W(4+/5+)) with the trinuclear copper(II) complex of 1,3,5-triazine-2,4,6-triyltris[3-(1,3,5,8,12-pentaazacyclotetradecane)] ([Cu(3)(L)](6+)) leads to partially encapsulated cyanometalates. With hexacyanometalate(III) complexes, [Cu(3)(L)](6+) forms the isostructural host-guest complexes [[[Cu(3)(L)(OH(2))(2)][M(CN)(6)](2)][M(CN)(6)]][M(CN)(6)]30 H(2)O with one bridging, two partially encapsulated, and one isolated [M(CN)(6)](3-) unit. The octacyanometalates of Mo(4+/5+) and W(4+/5+) are encapsulated by two tris-macrocyclic host units. Due to the stability of the +IV oxidation state of Mo and W, only assemblies with [M(CN)(8)](4-) were obtained. The Mo(4+) and W(4+) complexes were crystallized in two different structural forms: [[Cu(3)(L)(OH(2))](2)[Mo(CN)(8)]](NO(3))(8)15 H(2)O with a structural motif that involves isolated spherical [[Cu(3)(L)(OH(2))](2)[M(CN)(8)]](8+) ions and a "string-of-pearls" type of structure [[[Cu(3)(L)](2)[M(CN)(8)]][M(CN)(8)]](NO(3))(4) 20 H(2)O, with [M(CN)(8)](4-) ions that bridge the encapsulated octacyanometalates in a two-dimensional network. The magnetic exchange coupling between the various paramagnetic centers is characterized by temperature-dependent magnetic susceptibility and field-dependent magnetization data. Exchange between the CuCu pairs in the [Cu(3)(L)](6+) "ligand" is weakly antiferromagnetic. Ferromagnetic interactions are observed in the cyanometalate assemblies with Cr(3+), exchange coupling of Mn(3+) and Fe(3+) is very small, and the octacoordinate Mo(4+) and W(4+) systems have a closed-shell ground state.

Journal Article↗
PubMed2006

DFT models for copper(II) bispidine complexes: structures, stabilities, isomerism, spin distribution, and spectroscopy.

Various DFT and ab initio methods, including B3LYP, HF, SORCI, and LF-density functional theory (DFT), are used to compute the structures, relative stabilities, spin density distributions, and spectroscopic properties (electronic and EPR) of the two possible isomers of the copper(II) complexes with derivatives of a rigid tetradentate bispidine ligand with two pyridine and two tertiary amine donors, and a chloride ion. The description of the bonding (covalency of the copper-ligand interactions) and the distribution of the unpaired electron strongly depend on the DFT functional used, specifically on the nonlocal DF correlation and the HF exchange. Various methods may be used to optimize the DFT method. Unfortunately, it appears that there is no general method for the accurate computation of copper(II) complexes, and the choice of method depends on the type of ligands and the structural type of the chromophore. Also, it appears that the choice of method strongly depends on the problem to be solved. LF-DFT and spectroscopically oriented CI methods (SORCI), provided a large enough reference space is chosen, yield accurate spectroscopic parameters; EDA may lead to a good understanding of relative stabilities; accurate spin density distributions are obtained by modification of the nuclear charge on copper; solvation models are needed for the accurate prediction of isomer distributions.

Journal Article↗
PubMed2005

Coordination chemistry of a new rigid, hexadentate bispidine-based bis(amine)tetrakis(pyridine) ligand.

The hexadentate bispidine-based ligand 2,4-bis(2-pyridyl)-3,7-bis(2-methylenepyridine)-3,7-diazabicyclo[3.3.1]nonane-9-on-1,5-bis(carbonic acid methyl ester), L(6m), with four pyridine and two tertiary amine donors, based on a very rigid diazaadamantane-derived backbone, is coordinated to a range of metal ions. On the basis of experimental and computed structural data, the ligand is predicted to form very stable complexes. Force field calculations indicate that short metal-donor distances lead to a buildup of strain in the ligand; that is, the coordination of large metal ions is preferred. This is confirmed by experimentally determined stability constants, which indicate that, in general, stabilities comparable to those with macrocyclic ligands are obtained with the relative order Cu(2+) > Zn(2+) >> Ni(2+) < Co(2+), which is not the typical Irving-Williams behavior. The preference for large M-N distances also emerges from relatively high redox potentials (the higher oxidation states, that is, the smaller metal ions, are destabilized) and from relatively weak ligand fields (dd-transition, high-spin electronic ground states). The potentiometric titrations confirm the efficient encapsulation of the metal ions since only 1:1 complexes are observed, and, over a large pH range, ML is generally the only species present in solution.

Journal Article↗
PubMed2004

Density functional investigation of metal-metal interactions in mixed-valence d2d3 (Cr, Mo, W) and d3d4 (Mn, Tc, Re) face-shared [M2Cl9]2- systems.

The molecular and electronic structures of mixed-valence face-shared (Cr, Mo, W) d(2)d(3) and (Mn, Tc, Re) d(3)d(4) [M(2)Cl(9)](2-) dimers have been calculated by density functional methods in order to investigate metal-metal bonding in this series. The electronic structures of these systems have been analyzed using potential energy curves for the broken-symmetry and other spin states arising from the d(2)d(3) and d(3)d(4) coupling modes. In (d(2)d(3)) [Mo(2)Cl(9)](2-) and [W(2)Cl(9)](2-), the global minimum has been found to be a spin-doublet state characterized by delocalization of the metal-based electrons in a multiple metal-metal bond (with a formal bond order of 2.5). In contrast, weak coupling between the metal centers and electron localization are favored in (d(2)d(3)) [Cr(2)Cl(9)](2-), the global minimum for this species being a ferromagnetic S = 5/2 state with a relatively long Cr-Cr separation. The (d(3)d(4)) [Re(2)Cl(9)](2-) system also exhibits a global minimum corresponding to a metal-metal bonded spin-doublet state with a formal bond order of 2.5, reflecting the electron-hole equivalence between d(2)d(3) and d(3)d(4) configurations. Double minima behavior is predicted for (d(3)d(4)) [Tc(2)Cl(9)](2-) and [Mn(2)Cl(9)](2-) due to two energetically close low-lying states (these being S = 3/2 and S = 5/2 states for the former, and S = 5/2 and S = 7/2 states for the latter). A comparison of computational results for the d(2)d(2), d(2)d(3), and d(3)d(3) [W(2)Cl(9)](z-) series and the d(3)d(3), d(3)d(4), and d(4)d(4) [Re(2)Cl(9)](z-) series indicates that the observed trends in metal-metal distances can only be rationalized if changes in both the strength of sigma bonding and metal-metal bond order are taken into consideration. These two factors act conjointly in the W series but in opposition to one another in the Re series. In the case of the [Cr(2)Cl(9)](z-) and [Mn(2)Cl(9)](z-) dimers, the metal-metal bond lengths are significantly shorter for mixed-valence (d(2)d(3) or d(3)d(4)) than d(3)d(3) systems. This result is consistent with the fact that some degree of metal-metal bonding exists in the former (due to partial delocalization of a single sigma electron) but not in the latter (where all metal-based electrons are completely localized).

Journal Article↗
PubMed2004

Interpretation of the temperature-dependent color of blue copper protein mutants.

The electronic absorption spectrum of the mutant of the blue copper protein amicyanin with a pseudoazurin loop (AmiPse) shows a remarkable temperature dependence. The absorption band at approximately 460 nm increases at low temperature while the transition at approximately 600 nm is not much affected by a variation of the temperature. An approximate density functional theory (DFT) study of the active site model [Cu(II)(imidazole)(2)(SCH(3))(S(CH(3))(2))](+) (protein backbone and solvation neglected) leads to two local minimum structures (axial and rhomb) which both have a geometry close to that typical for blue copper proteins. One (rhomb) has two structurally different histidine donors, and this geometry is also found in most experimental type 1 structures. The two forms axial and rhomb are distortional isomers and are energetically almost degenerate. The temperature dependence of the spectrum of AmiPse is interpreted with a temperature-dependent change of the relative population of the two local minimum structures with slightly different energy. The 460 nm transition is believed to be due to preferential population of the structure rhomb; this is in agreement with the published assignment of the high energy transition, based on thorough spectroscopic and computational studies. Consequences of a perturbation of the "gas phase" structures axial and rhomb by the protein and solvation are also discussed on the basis of published, experimentally observed structures and spectroscopic data.

Azurin↗
PubMed2003

Structural properties of cyclopentanone-bridged bis-macrocyclic ligand dicopper(II) complexes in the solid and in solution: a successful test of the MM-EPR method.

The copper(II)-assisted condensation of 2,3,2-tet (3,7-diazanonane-1,9-diamine) with formaldehyde and cyclopentanone yields the mono- and bis-macrocyclic Mannich condensation products L(1) and L(2), as well as the Schiff-base product L(3), all with cyclam-type tetraaza macrocycles, coordinated to copper(II). The combination of molecular mechanics and EPR spectroscopy (MM-EPR) reveals that all three isomers of [Cu(2)(L(2))(OH(2))(n)](2+) (n = 0-4), with the expected trans-III (R,R,S,S) configuration of the 14-membered tetraaza macrocycles, are of similar stability, and that the isomer whose structure is solved by X-ray crystallography has a different structure in solution.

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