Biomedical subjects

Pierre-Charles Maria

Publications and source records attributed to Pierre-Charles Maria.

17 recordsLinked to original sources

PubMed2006

Complexes between lithium cation and diphenylalkanes in the gas phase: the pincer effect.

The gas-phase lithium cation basicities (LCB values, Gibbs free energies of binding) of alpha,omega-diphenylalkanes Ph-(CH(2))(n)-Ph (n=2, 3, or 7) and 1,1-diphenylethane Ph-CH(Me)-Ph were investigated by means of Fourier-transform ion cyclotron resonance (FTICR) mass spectrometry. Their structures, and those of the corresponding Li(+) complexes were optimized at the B3LYP/6-31G(d) level and their relative stabilities calculated at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31G(d) level. Whereas the most stable conformers of the free diphenylalkanes were found to adopt a completely stretched aliphatic chain connecting the two benzene rings, the most stable Li(+) complexes correspond to conformers in which the alkali metal cation interacts simultaneously with both benzene rings through the folding of the aliphatic chain ("pincer effect"). This chelation brings about a significant enhancement of the Li(+) binding enthalpies (LBE values), which were calculated to be approximately 75 kJ mol(-1) higher than those evaluated for conventional (singly coordinated) pi complexes in which the metal cation interacts with only one of the benzene rings. The increase of the corresponding lithium cation basicities, however, (Gibbs free energies of Li(+) binding, LCB values) was calculated to be smaller by approximately 15 kJ mol(-1) as the pincer effect is entropically disfavored. The good agreement between the calculated LCB values, assuming a statistical distribution of the different conformers present in the gas phase, and the experimental LCB values measured by means of FTICR mass spectrometry are considered indirect evidence of the existence of the pincer effect.

Journal Article↗

PubMed2006

Ab initio and experimental thermodynamic and kinetic study of proton-assisted bond activation in gaseous hydrocarbons: deconvolution of reaction efficiencies in the case of adamantane.

1) Protonation at all possible sites of adamantane (C(10)H(16)) was studied at the MP2/6-311++G(3df,2p)//MP2/6-311++G(d,p) level. This provided values of the changes in the thermodynamic state functions for these processes. Whenever direct comparison was possible, the agreement with experimental data was very good. 2) By the same means, the reaction paths linking the various species obtained in these reactions were analyzed. 3) Fourier transform ion cyclotron resonance (FT-ICR) spectroscopy was used to determine the rate constants for proton transfer from 16 protonated reference bases to adamantane in the gas phase. Also, the rate constants for the formation of ionic products in these reactions were determined. 4) The experimental reaction rates were successfully predicted and refined on the basis of a simple mechanistic model based on the reaction profiles indicated above. 5) Our results hint at the potential usefulness of this approach for mechanistic studies.

Journal Article↗

PubMed2006

Bonding energetics in clusters formed by cesium salts: a study by collision-induced dissociation and density functional theory.

In relation to the interaction between (137)Cs and soil organic matter, electrospray mass spectrometry experiments and density functional theory (DFT) calculations were carried out on the dissociation of positively charged adducts formed by cesium nitrate and cesium organic salts attached to a cesium cation [Cs(CsNO(3))(CsA)](+) (A = benzoate, salicylate, hydrogen phthalate, hydrogen maleate, hydrogen fumarate, hydrogen oxalate, and hydrogen malonate ion). These mixed clusters were generated by electrospray from methanol solutions containing cesium nitrate and an organic acid. Collision-induced dissociation of [Cs(CsNO(3))(CsA)](+) in a quadrupole ion trap gave [Cs(CsNO(3))](+) and [Cs(CsA)](+) as major product ions. Loss of HNO(3) was observed, and also CO(2) loss in the case of A = hydrogen malonate. Branching ratios for the dissociation into [Cs(CsNO(3))](+) and [Cs(CsA)](+) were treated by the Cooks' kinetic method to obtain a quantitative order of bonding energetics (enthalpies and Gibbs free energies) between Cs(+) and the molecular salt (ion pair) CsA, and were correlated with the corresponding values calculated using DFT. The kinetic method leads to relative scales of Cs(+) affinities and basicities that are consistent with the DFT-calculated values. This study brings new data on the strong interaction between the cesium cation and molecular salts CsA.

Cesium Radioisotopes↗

PubMed2005

Thermogravimetric calibration of permeation tubes used for the preparation of gas standards for air pollution analysis.

Sources of VOC (Volatile Organic Compounds) reference-materials at ppm and ppb levels are needed for calibration of air monitoring instruments. The permeation-tube technique is considered effective for the preparation of low concentration standards of high accuracy and stability. In this work, purpose-built PTFE permeation tubes, containing benzene, toluene, ethylbenzene, o-xylene or m-xylene (BTEX) were accurately and rapidly calibrated. Using the sensitive thermo-balance of a thermogravimetric apparatus, very low permeation rates were determined by the continuous monitoring of the tube weight loss as a function of time. Permeation rates in the range from 25 to 350 ng min(-1) were determined with precision. Thermogravimetry appears to be a rapid method for the measurement of weight loss at constant temperature, allowing rapid characterization and recalibration of permeation tubes. A detailed study on toluene, chosen as a typical case, showed that there are variations of the permeation rate in the long term. The temperature dependence of the permeation coefficient was also explored and permeation rates were shown to display an Arrhenius behavior in the temperature range 304-324 K. Thermodynamic parameters influencing the permeation were discussed.

Air Pollutants↗

PubMed2005

Acidity trends in alpha,beta-unsaturated sulfur, selenium, and tellurium derivatives: comparison with C-, Si-, Ge-, Sn-, N-, P-, As-, and Sb-containing analogues.

The gas-phase acidity of CH3-CH2XH (X=S, Se, Te), CH2=CHXH (X=S, Se, Te) and PhXH (X=S, Se) compounds was measured by means of Fourier transform ion cyclotron resonance mass spectrometry. To analyze the role that unsaturation plays on the intrinsic acidity of these systems, a parallel theoretical study, in the framework of the G2 and the G2(MP2) theories, was carried out for all ethyl, ethenyl (vinyl), ethynyl, and phenyl O-, S-, Se-, and Te-containing derivatives. Unsaturated compounds are stronger acids than their saturated analogues, because of the strong pi-electron donor ability of the heteroatoms that contributes to a large stabilization of the unsaturated anions. Ethynyl derivatives are stronger acids than vinyl compounds, while phenyl derivatives have an intrinsic acidity intermediate between that of the corresponding vinyl and ethynyl analogues. The CH2=CHXH vinyl compounds (enol-like) behave systematically as slightly stronger acids than their CH3-C(H)X (keto-like) tautomers. Vinyl derivatives are stronger acids than ethyl compounds, because the anion stabilization attributable to unsaturation is greater than that undergone in the neutral compounds. Conversely, the enhanced acidity of the ethynyl derivatives with respect to the vinyl compounds is due to two concomitant effects, the stabilization of the anion and the destabilization of the neutral compound. The acidities of ethyl, vinyl, and ethynyl derivatives containing heteroatoms of Groups 14, 15, and 16 of the periodic table are closely related, and reflect the differences in electronegativity of the CH3CH2-, CH2=CH-, and CH[triple chemical bond]C- groups.

Journal Article↗

PubMed2005

Investigations of cluster ions formed between cesium cations and benzoic, salicylic and phthalic acids by electrospray mass spectrometry and density-functional theory calculations. Toward a modeling of the interaction of Cs+ with humic substances.

A concerted theoretical (density-functional theory) and experimental electrospray mass spectrometry study was conducted on the formation of cesium cation adducts with small molecules taken as models of specific interactions sites in humic substances. Electrospray experiments with phenol, benzoic acid, salicylic acid, and phthalic acid, in methanolic solution containing cesium nitrate, were performed using a quadrupole ion trap. The formation of positively charged mixed clusters, [Cs(CsNO3)(n)(CsA1)(m)(Cs2A2)(p)]+ (A1 = benzoate, salicylate, and hydrogenophthalate, A2 = phthalate), was observed. Calculations of structures and bonding energetics of Cs+ in simple adducts formed with NO3-, CsNO3, A-, AH, and CsA are reported. The observation of variable cluster stoichiometry (n, m and p values) was interpreted in terms of more or less favorable interaction energies between Cs+ and the neutral species constituting the clusters. Phenol did not form clusters in significant abundances, despite a strong calculated interaction between Cs+ and cesium phenolate. This was attributed to its weak acid dissociation in the electrospray solution.

Acids, Carbocyclic↗

PubMed2004

Experimental and theoretical evidence of basic site preference in polyfunctional superbasic amidinazine: N(1),N(1)-dimethyl-N(2)-beta-(2-pyridylethyl)formamidine.

The gas-phase basicity (GB) of the flexible polyfunctional N(1),N(1)-dimethyl-N(2)-beta-(2-pyridylethyl)formamidine (1) containing two potential basic sites (the ring N-aza and the chain N-imino) is obtained from proton-transfer equilibrium constant measurements, using Fourier-transform ion-cyclotron resonance mass spectrometry. Comparison of the experimental GB obtained for 1 with those reported for model amidines and azines indicates that the chain N-imino in the amidine group is the favored site of protonation. Semiempirical (AM1) and ab initio calculations (HF, MP2, and DFT), performed for 1 and its protonated forms, confirm this interpretation. These results are in contrast to those found previously for N(1),N(1)-dimethyl-N(2)-azinylformamidines (containing the amidine function directly linked to the azinyl ring), in which the ring N-aza is the most basic site in the gas phase. The separation of the two potential basic sites in 1 by the ethylene chain interrupts the resonance conjugation between the two functions and changes their relative basicities and, thus, the preferable site of protonation. It also increases the chelation effect against the proton and the gas-phase basicity of 1 in such a magnitude that consequently 1 may be classified as a superbase (GB = 241.1 kcal mol(-)(1)). A transition state corresponding to the internal transfer of the proton (ITP) between the ring N-aza and the chain N-imino in 1 is investigated at the DFT(B3LYP)/6-31G level. The energy barrier calculated for the ITP between the two basic sites is small and vanishes when zero-point vibrational terms and thermal corrections are applied to obtain the enthalpy or Gibbs energy of activation for the proton transfer. Additional calculations at the DFT(MPW1K)/6-31G level confirm this behavior. This indicates that the quantum-chemical ITP in 1 has a single-well character. The proton is located on the N-imino site, and the H-bond is formed with the N-aza site.

Journal Article↗

PubMed2004

Determination of benzene, toluene, ethylbenzene and xylenes in air by solid phase micro-extraction/gas chromatography/mass spectrometry.

The aim of the study was to analyse BTEX compounds (benzene, toluene, ethylbenzene, xylenes) in air by solid phase micro-extraction/gas chromatography/mass spectrometry (SPME/GC/MS), and this article presents the features of the calibration method proposed. Examples of real-world air analysis are given. Standard gaseous mixtures of BTEX in air were generated by dynamic dilution. SPME sampling was carried out under non-equilibrium conditions using a Carboxen/PDMS fibre exposed for 30 min to standard gas mixtures or to ambient air. The behaviour of the analytical response was studied from 0 to 65 microg/m3 by adding increasing amounts of BTEX to the air matrix. Detection limits range from 0.05 to 0.1 microg/m3 for benzene, depending on the fibre. Inter-fibre relative standard deviations (reproducibility) are larger than 18%, although the repeatability for an individual fibre is better than 10%. Therefore, each fibre should be considered to be a particular sampling device, and characterised individually depending on the required accuracy. Sampling indoor and outdoor air by SPME appears to be a suitable short-delay diagnostic method for volatile organic compounds, taking advantage of short sampling time and simplicity.

Air Pollutants↗

PubMed2003

The nicotinic pharmacophore: thermodynamics of the hydrogen-bonding complexation of nicotine, nornicotine, and models.

The thermodynamics of the hydrogen-bonding complexation of the acetylcholine agonists nicotine and nornicotine and of model pyridines, pyrrolidines, and N-methylpyrrolidines has been measured in CCl(4) by FTIR spectrometry toward a reference hydrogen-bond donor, 4-fluorophenol. Various methods are devised for measuring separately the hydrogen-bond acceptor strength of each nitrogen of nicotine and nornicotine: variation of the stoichiometry of complexation; correlations with electrostatic potentials on nitrogens and with substituent constants in the series of 3-substituted pyridines, 2-substituted pyrrolidines, and 2-substituted N-methylpyrrolidines; and linear free energy relationships between 4-fluorophenol and hydrogen fluoride hydrogen-bonded complexes. It is consistently found that nicotine and nornicotine have two active hydrogen-bond acceptor sites, the pyridine and pyrrolidine nitrogens, and that ca. 90% (for nicotine) and 80% (for nornicotine) of the 1:1 hydrogen-bonded complexes are formed to the pyridine nitrogen, although the pyrrolidine nitrogen is the first protonation site of nicotine and nornicotine in water. The low hydrogen-bond basicity of the pyrrolidine nitrogen in nicotine is mainly explained by the inductive electron-withdrawing and steric effects of the 2-(3-pyridyl) substituent. The partition of the Gibbs energy of the isomerism of complexation (AH...Nsp(2) <==> AH...Nsp(3)) into enthalpic and entropic contributions shows that the selectivity in favor of the pyridine nitrogen is driven by entropy. It is important to recognize the bifunctionality of nicotine in hydrogen bonding for understanding its lipophilicity and molecular recognition in non protonic media. When monoprotonated on their sp(3) nitrogen, nicotine and nornicotine keep, through their sp(2) nitrogen, a significant hydrogen-bond basicity which is greater than that of the ester group of acetylcholine.

Hydrogen Bonding↗

PubMed2003

Enhanced Li+ binding energies in alkylbenzene derivatives: the scorpion effect.

The gas-phase lithium cation basicities (LCBs; Gibbs free energy of binding) of ethyl-, n-butyl-, and n-heptylbenzene have been measured by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. The structures of the corresponding complexes and their relative stabilities were investigated through the use of B3LYP/6-311G(+)(3df,2p)//B3LYP/6-31G(d) density functional theory calculations. For n-butylbenzene and n-heptylbenzene, the most stable adducts correspond to pi complexes in which the alkyl chain coils toward the aromatic ring to favor its interaction with the metal cation. The extra stabilization provided by the flexible alkyl chain polarized by the charge on Li(+) is named the "scorpion effect". Conversely, these coiled conformations are among the least stable in the neutral system; they are not all stationary points on the potential-energy surface. The formation of complexes with a coiled alkyl chain leads to a significant enhancement of the Li(+) bonding energies (LBEs), which are approximately 20-30 kJ mol(-1) higher than those calculated for alkylbenzene pi complexes in which an uncoiled chain remains distant from the cation and thus minimizes the scorpion effect. This enhancement is less significant when LCBs are concerned, because the scorpion effect is entropically disfavored. There is very good agreement between the experimental Li(+) gas-phase basicities and the calculated values, provided that the statistical distribution of the conformers present in the gas phase is taken into account in this calculation.

Journal Article↗

PubMed2003

Lithium-cation/pi complexes of aromatic systems. The effect of increasing the number of fused rings.

The gas-phase lithium cation basicities (LCBs) of naphthalene, azulene, anthracene, and phenanthrene were measured by means of Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. The structures of the corresponding complexes and their relative stabilities were investigated at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31G(d) level of theory. In the theoretical survey, pyrene, coronene, [3]phenylene, angular [3]phenylene, and circumcoronene were also included. The strength of the binding to a given aromatic cycle decreases as the number of cycles directly fused to it increases. Hence, the stability of the outer pi-complexes, in which Li(+) is attached to the peripheral rings, is systematically greater than that of the complexes in which the metal is attached to the inner rings. The energy gap between these local minima decreases as the number of fused rings in the system increases. This result seems to indicate that, as the size of the system increases, the rings tend to lose their peculiarities, in such a way that in the limit of a graphite sheet all rings would exhibit identical characteristics and reactivity. The good agreement between calculated LCBs and experimental values lends support to the enhanced stability of the outer complexes. The activation barriers connecting these local minima decrease as the number of fused cycles increases, but seems to tend toward a limit. [3]Phenylene and angular [3]phenylene exhibit enhanced LCBs reflecting nonnegligible Mills-Nixon effects that increase the electron-donor properties of these annelated benzenes.

Journal Article↗

PubMed2003

Is allylphosphine a carbon or a phosphorus base in the gas phase?

The gas-phase basicity of allylphosphine (2-propenylphosphine) was measured by means of Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry techniques. A complete survey of the allylphosphine-H(+) potential energy surface, carried out through the use of high-level G2(MP2) and B3LYP/6-311+G(3df,2p) calculations, allows us to conclude that, under low-pressure, low-energy ICR conditions, the interaction between the protonated reference base, B(ref)H(+), and allylphosphine leads to a complex in which B(ref)H(+) attaches to the phosphorus atom of allylphosphine, where the electrostatic potential is strongly attractive. Hence, in the first step only the phosphorus protonated species should be formed. Its isomerization to yield the C(beta)-protonated form, which is the global minimum of the potential energy surface, implies a very high activation barrier that cannot be overtaken under normal experimental ICR conditions. Therefore, the main conclusion of our study is that allylphosphine behaves as a phosphorus base in the gas phase, even though the C(beta)-protonated structure is the most stable protonated species. We have also shown that both C(beta)- and C(gamma)-protonation triggers a cyclization of the system. An analysis of the bonding of the different protonated species as compared with that of the neutral system is presented.

Journal Article↗

PubMed2003

A quadrupole ion trap and Fourier transform ion cyclotron resonance concerted study of the kinetics of an ion/molecule association reaction: a chemometric approach.

The effects of different experimental parameters on rate constant measurements performed by mass spectrometry were investigated with a two-level fractional factorial design. This chemometric technique allows a study of the effects of selected factors and of their interactions on the response of an experiment by performing a limited number of analyses. The selected factors were: sample pressure, energy of the ionising electrons, reaction time and ionisation time. In this work, two mass spectrometric techniques were compared: Fourier transform ion cyclotron resonance (FT-ICR) and quadrupole ion trap (QIT) mass spectrometries. Experimental results were obtained from a study of a reaction system consisting of the condensation between triethylphosphite and its fragment ion (CH(3)CH(2)O)(2)P(+). Apparent bimolecular rate constants are clearly larger when determined by QIT than by FT-ICR, because of collisional stabilisation of the adduct ion by helium buffer gas introduced in the QIT spectrometer. However, the QIT rate constant extrapolated to zero helium pressure is almost identical to the FT-ICR value; this supports the conclusion regarding the buffer gas effect. Minor effects evidenced by the chemometric method were attributed to the sample pressure and to the reaction time.

Cyclotrons↗

PubMed2002

The gas-phase acidity of HCP, CH3CP, HCAs, and CH3CAs: an unexpected enhanced acidity of the methyl group.

The gas-phase acidities of methylidynephosphine, HCtbond;P, ethylidynephosphine, CH(3)Ctbond;P, and ethylidynearsine, CH(3)Ctbond;As, have been measured by means of Fourier Transform Ion Cyclotron Resonance (FTICR) mass spectrometry and calculated at the CCSD(T)/6-311+G(3df,2p)//QCISD/ 6-311+G(df,p) level of theory. An analysis of these results shows that, in contrast to the well-known fact that HCtbond;N is a stronger acid than CH(3)Ctbond;N, CH(3)Ctbond;P and CH(3)Ctbond;As are more acidic than HCtbond;P and HCtbond;As, respectively. The most important consequence of this unexpected effect is that while HCtbond;P and HCtbond;As are found to be weaker acids than HCtbond;N, the opposite trend is found for the corresponding methyl derivatives, the acidity of which increases as CH(3)Ctbond;N<CH(3)Ctbond;P<CH(3)Ctbond;As. Also the effects of deprotonation on the structures and the vibrational frequencies of HCtbond;X and CH(3)Ctbond;X (X=N, P, As) compounds are qualitatively similar, but quantitatively very different for nitrogen- as compared with phosphorus- and arsenic-containing compounds. A rationalization of these differences in terms of the bonding differences is presented.

Journal Article↗

PubMed2002

Site of protonation of nicotine and nornicotine in the gas phase: pyridine or pyrrolidine nitrogen?

The gas-phase basicities (GBs) of nornicotine, nicotine, and model pyrrolidines have been measured by FT-ICR. These experimental GBs are compared with those calculated (for the two sites of protonation in the case of nicotine and nornicotine) at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31G(d,p) level, or those estimated from substituent effects on the GBs of 2-substituted pyrrolidines, 2-substituted N-methylpyrrolidines, and 3-substituted pyridines. It is found that, in contrast to the Nsp(3) protonation in water, in the gas phase nornicotine is protonated on the pyridine nitrogen, because the effects of an intramolecular CH.Nsp(3) hydrogen bond and of the polarizability of the 3-(pyrrolidin-2-yl) substituent add up on the Nsp(2) basicity, while the polarizability effect of the 2-(3-pyridyl) substituent on the Nsp(3) basicity is canceled by its field/inductive electron-withdrawing effect. The same structural effects operate on the Nsp(3) and Nsp(2) basicities of nicotine, but here, the polarizability effect of the methyl group puts the pyrrolidine nitrogen basicity very close to that of pyridine. Consequently, protonated nicotine is a mixture of the Nsp(3) and Nsp(2) protonated forms.

Binding Sites↗

PubMed2002

Using thermogravimetry for weight loss monitoring of permeation tubes used for generation of trace concentration gas standards.

Permeation tubes are convenient analyte sources for generating standard gas mixtures (containing, in particular, volatile organic compounds) used in the calibration of analytical instruments. For small permeation rates, corresponding to trace levels of analytes, the calibration of permeation tubes is time-consuming. The use of thermogravimetry as a means to measure rapidly the weight loss at constant temperature was investigated. An attempt to apply this technique to calibrating a permeation tube filled with benzene is described. In the 20 ng/min range of permeation rate, day-to-day variations of <5% were observed. The continuous weight loss monitoring of permeation tubes by thermogravimetry allows their rapid characterization.

Air Pollutants↗

PubMedDate not supplied

SPME sampling of BTEX before GC/MS analysis: examples of outdoor and indoor air quality measurements in public and private sites.

This article presents the results of an exploratory application of the Solid Phase MicroExtraction (SPME) technique to the analysis of BTEX (benzene, toluene, ethylbenzene and xylenes) at the microg/m3 level in outdoor and indoor air. The salient features of the method validation are reported. As shown by the various examples of field sampling described, SPME technique appears as a method of choice for fast qualitative analysis and quantitative determination of Volatile Organic Compounds (VOC). The small dimensions of the SPME sampling system and the short sampling time let envisage its utilisation for the rapid diagnostic of outdoor and indoor air quality.

Air Pollutants↗