PubMed Health⌕ Search

Biomedical subjects

Piotr Garstecki

Publications and source records attributed to Piotr Garstecki.

18 recordsLinked to original sources
PubMed2007

Coding/decoding and reversibility of droplet trains in microfluidic networks.

Droplets of one liquid suspended in a second, immiscible liquid move through a microfluidic device in which a channel splits into two branches that reconnect downstream. The droplets choose a path based on the number of droplets that occupy each branch. The interaction among droplets in the channels results in complex sequences of path selection. The linearity of the flow through the microchannels, however, ensures that the behavior of the system can be reversed. This reversibility makes it possible to encrypt and decrypt signals coded in the intervals between droplets. The encoding/decoding device is a functional microfluidic system that requires droplets to navigate a network in a precise manner without the use of valves, switches, or other means of external control.

Alkanes↗
PubMed2006

Diffusion and viscosity in a crowded environment: from nano- to macroscale.

Although water is the chief component of living cells, food, and personal care products, the supramolecular components make their viscosity larger than that of water by several orders of magnitude. Using fluorescence correlation spectroscopy (FCS), photon correlation spectroscopy (PCS), NMR, and rheology data, we show how the viscosity changes from the value for water at the molecular scale to the large macroviscosity. We determined the viscosity experienced by nanoprobes (of sizes from 0.28 to 190 nm) in aqueous micellar solution of hexaethylene-glycol-monododecyl-ether (in a range of concentration from 0.1% w/w to 35% w/w) and identified a clear crossover at the length scale of 17 +/- 2 nm (slightly larger than persistence length of micelles) at which viscosity acquires its macroscopic value. The sharp dependence of the viscosity coefficients on the size of the probe in the nanoregime has important consequences for diffusion-limited reactions in crowded environments (e.g., living cells).

Journal Article↗
PubMed2006

Bifurcation of droplet flows within capillaries.

Flows of droplets through networks of microchannels differ significantly from the flow of simple fluids. Our report focuses on the paths of individual droplets through the simplest possible network: a channel that splits into two arms that subsequently recombine. This simple system exhibits complex patterns of flow: both periodic and irregular, depending on the frequency at which the drops are fed into the "loop." A numerical model explains these results and shows regions of regular patterns separated by regions of high complexity. Our results elicit new questions regarding the dynamics of flow of discrete elements of fluids through networks, and point to potential opportunities and difficulties in the design of integrated mini-laboratories operating on droplets.

Journal Article↗
PubMed2006

Flowing crystals: nonequilibrium structure of foam.

Bubbles pushed through a quasi-two-dimensional channel self-organize into a variety of periodic lattices. The structures of these lattices correspond to local minima of the interfacial energy. The "flowing crystals" are long-lived metastable states, a small subset of possible local minima of confined quasi-two-dimensional foams [P. Garstecki and G. M. Whitesides, Phys. Rev. E 73, 031603 (2006)10.1103/PhysRevE.73.031603]. Experimental results suggest that the choice of the structures that we observe is dictated by the dynamic stability of the cyclic processes of their formation. Thus, the dynamic system that we report provides a unique example of nonequilibrium self-organization that results in structures that correspond to local minima of the relevant energy functional.

Journal Article↗
PubMed2006

Bubbling in unbounded coflowing liquids.

An investigation of the stability of low density and viscosity fluid jets and spouts in unbounded coflowing liquids is presented. A full parametrical analysis from low to high Weber and Reynolds numbers shows that the presence of any fluid of finite density and viscosity inside the hollow jet elicits a transition from an absolute to a convective instability at a finite value of the Weber number, for any value of the Reynolds number. Below that critical value of the Weber number, the absolute character of the instability leads to local breakup, and consequently to local bubbling. Experimental data support our model.

Journal Article↗
PubMed2006

Tessellation of a stripe.

This paper describes enumeration of a class of topologically distinct periodic divisions of a stripe. Optimization of the geometry of these periodic tilings--optimization that yields minimum total perimeter of the tiles--gives a set of physically plausible periodic structures of monodisperse, two-dimensional foams bounded by two parallel walls. Evaluation of the minimum total perimeters of the lattices that we enumerated suggests two possible lower bounds for the mean perimeter of tiles forming periodic coverings of a stripe.

Journal Article↗
PubMed2006

Formation of droplets and bubbles in a microfluidic T-junction-scaling and mechanism of break-up.

This article describes the process of formation of droplets and bubbles in microfluidic T-junction geometries. At low capillary numbers break-up is not dominated by shear stresses: experimental results support the assertion that the dominant contribution to the dynamics of break-up arises from the pressure drop across the emerging droplet or bubble. This pressure drop results from the high resistance to flow of the continuous (carrier) fluid in the thin films that separate the droplet from the walls of the microchannel when the droplet fills almost the entire cross-section of the channel. A simple scaling relation, based on this assertion, predicts the size of droplets and bubbles produced in the T-junctions over a range of rates of flow of the two immiscible phases, the viscosity of the continuous phase, the interfacial tension, and the geometrical dimensions of the device.

Emulsions↗
PubMed2006

Flowing lattices of bubbles as tunable, self-assembled diffraction gratings.

We demonstrate tunable, fluidic, two-dimensional diffraction gratings based on a microfluidic platform comprising a flow-focusing bubble generator and flowing, regular lattices of bubbles formed by dynamic self-assembly. The structure of these lattices can be tuned with switching times of less than ten seconds by changing the pressures and rates of flow applied to the device. These diffraction gratings exhibit high stability (over hours of operation if properly designed and operated). For our devices, we achieved tunable ranges in pitch from 12 to 51 microm, corresponding to first-order diffraction angles from 3.2 degrees to 0.7 degrees for light with a wavelength of 632 nm.

Biotin↗
PubMed2005

Mixing with bubbles: a practical technology for use with portable microfluidic devices.

This paper demonstrates a methodology for micromixing that is sufficiently simple that it can be used in portable microfluidic devices. It illustrates the use of the micromixer by incorporating it into an elementary, portable microfluidic system that includes sample introduction, sample filtration, and valving. This system has the following characteristics: (i) it is powered with a single hand-operated source of vacuum, (ii) it allows samples to be loaded easily by depositing them into prefabricated wells, (iii) the samples are filtered in situ to prevent clogging of the microchannels, (iv) the structure of the channels ensure mixing of the laminar streams by interaction with bubbles of gas introduced into the channels, (v) the device is prepared in a single-step soft-lithographic process, and (vi) the device can be prepared to be resistant to the adsorption of proteins, and can be used with or without surface-active agents.

Equipment Design↗
PubMed2005

Microoxen: microorganisms to move microscale loads.

It is difficult to harness the power generated by biological motors to carry out mechanical work in systems outside the cell. Efforts to capture the mechanical energy of nanomotors ex vivo require in vitro reconstitution of motor proteins and, often, protein engineering. This study presents a method for harnessing the power produced by biological motors that uses intact cells. The unicellular, biflagellated algae Chlamydomonas reinhardtii serve as "microoxen." This method uses surface chemistry to attach loads (1- to 6-microm-diameter polystyrene beads) to cells, phototaxis to steer swimming cells, and photochemistry to release loads. These motile microorganisms can transport microscale loads (3-microm-diameter beads) at velocities of approximately 100-200 microm.sec(-1) and over distances as large as 20 cm.

Animals↗
PubMed2005

Escherichia coli swim on the right-hand side.

The motion of peritrichously flagellated bacteria close to surfaces is relevant to understanding the early stages of biofilm formation and of pathogenic infection. This motion differs from the random-walk trajectories of cells in free solution. Individual Escherichia coli cells swim in clockwise, circular trajectories near planar glass surfaces. On a semi-solid agar substrate, cells differentiate into an elongated, hyperflagellated phenotype and migrate cooperatively over the surface, a phenomenon called swarming. We have developed a technique for observing isolated E. coli swarmer cells moving on an agar substrate and confined in shallow, oxidized poly(dimethylsiloxane) (PDMS) microchannels. Here we show that cells in these microchannels preferentially 'drive on the right', swimming preferentially along the right wall of the microchannel (viewed from behind the moving cell, with the agar on the bottom). We propose that when cells are confined between two interfaces--one an agar gel and the second PDMS--they swim closer to the agar surface than to the PDMS surface (and for much longer periods of time), leading to the preferential movement on the right of the microchannel. Thus, the choice of materials guides the motion of cells in microchannels.

Agar↗
PubMed2005

Nonlinear dynamics of a flow-focusing bubble generator: an inverted dripping faucet.

We describe the rich dynamic behavior--including period-doubling and period-halving bifurcations, intermittency, and chaos--observed in the breakup of an inviscid fluid in a coflowing, viscous liquid, both confined in a microfabricated flow-focusing geometry. Experimental observations support inertia-dominated dynamics of the interface, and suggest the possible similarity to the dynamics of a topologically inverted counterpart of this system, that is, a dripping faucet.

Journal Article↗
PubMed2005

Mechanism for flow-rate controlled breakup in confined geometries: a route to monodisperse emulsions.

This Letter describes a quasistationary breakup of an immiscible, inviscid fluid at low capillary numbers. The breakup proceeds in a coflowing, viscous liquid, in a confined geometry of a long and narrow orifice. In contrast to the capillary instability in an unbounded fluid, the collapse proceeds through a series of equilibria, each yielding the minimum interfacial energy of the fluid-fluid interface. The process is slow in comparison to typical relaxation speeds of the interface, and it is reversible. Its quasistatic character of collapse forms the basis for controlled, high-throughput generation of monodisperse fluid dispersions.

Journal Article↗
PubMed2005

Combining microscience and neurobiology.

There is a wide range of literature on soft lithography, organic surface science (especially self-assembled monolayers of organic thiols adsorbed on gold) and microfluidics. These areas have developed in the fields of physical and surface chemistry, materials science and condensed matter physics, but they offer broad new capabilities in the development of relevant micro- and nanosystems to users in biology in general, and in cell biology in particular. The ability to integrate these techniques for fabricating materials and for controlling the chemistry of surfaces with electrical and electrochemical measurements should be especially relevant in neurobiology. The major impediment to the development of a field of 'microfabrication and measurement' in neuroscience is the absence of effective collaborative interactions between the communities of fabricators and neurobiologists.

Cell Culture Techniques↗
PubMed2004

Dynamic control of liquid-core/liquid-cladding optical waveguides.

This report describes the manipulation of light in waveguides that comprise a liquid core and a liquid cladding (liq/liq waveguide). These waveguides are dynamic: Their structure and function depend on a continuous, laminar flow of the core and cladding liquids. Because they are dynamic, they can be reconfigured and adapted continuously in ways that are not possible with solid-state waveguides. The liquids are introduced into the channels of a microfluidic network designed to sandwich the flowing core liquid between flowing slabs of the cladding fluid. At low and moderate Reynolds numbers, flow is laminar, and the liq/liq interfaces are optically smooth. Small irregularities in the solid walls of the channels do not propagate into these interfaces, and liq/liq waveguides therefore exhibit low optical loss because of scattering. Manipulating the rate of flow and the composition of the liquids tunes the characteristics of these optical systems.

Journal Article↗
PubMed2003

Two-dimensional colloid crystals obtained by coupling of flow and confinement.

This Letter describes the generation of 2D colloidal lattices in microchannels by coupling the laminar flow of dispersions of spherical colloids and geometrical confinement. We describe a nonequilibrium, convective, mechanism leading to formation of ordered 2D structures of both closed-packed hexagonal and non-closed-packed rhombic symmetries. The number and types of possible lattices is determined by the ratio of the width of the channel to the diameter of the particle. The structures tend to return to a regular lattice after a defect is introduced; that is, for example, they tend to self-repair disorder induced by particle polydispersity, contaminants, and flow instabilities. The stability of different lattices is analyzed numerically for particles with different polydispersity.

Journal Article↗