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Biomedical subjects

R A Benfer

Publications and source records attributed to R A Benfer.

11 recordsLinked to original sources
PubMed2001

Bootstrap methods for sex determination from the os coxae using the ID3 algorithm.

This study presents a method for identifying small subsets of morphological attributes of the skeletal pelvis that have consistently high reliability in assigning the sex of unknown individuals. An inductive computer algorithm (ID3) was applied to a bootstrapped training set/test set design in which the model was developed from 70% of the sample and tested on the remaining 30%. Relative accuracy of sex classification was evaluated for seven subsets of 31 morphological features of the adult os coxae. Using 115 ossa coxarum selected from the Terry Collection, a selected suite of the three most consistently diagnostic attributes averaged 93.1% correct classification of individuals by sex over ten trials. Attribute suites developed collaboratively with three well known skeletal experts averaged 87.8, 91.3, and 89.6% correct. The full set of 31 attributes averaged 90.0% accuracy. We demonstrate a small set of three criteria, selected and ordered by ID3, that is more accurate than other combinations, and suggest that ID3 is a useful approach for developing identification systems.

Algorithms↗
PubMed2000

Genetic and environmental influence on the asymmetry of dermatoglyphic traits.

Fluctuating asymmetry (FA) is defined as random deviations from bilateral symmetry of the body. Thus, its magnitude is often used to evaluate developmental homeostasis. In this study we evaluate the following hypotheses: 1) FA of dermatoglyphic traits has a significant genetic component; 2) prenatal maternal environment (PME) has a significant effect on the FA of dermatoglyphic traits in developmentally healthy individuals; and 3) genetic or environmental factors affect FA on organismal or systemic levels. Therefore, their effect is better seen in composite scores of FA rather than in FA indices for single traits. We analyzed 15 dermatoglyphic traits from 140 pairs of monozygous twins, 120 pairs of dizygous twins, and 106 pairs of mothers and daughters. All individuals were developmentally healthy. The influence of genetic and environmental factors on FA was evaluated by analysis of variance and regression analysis. For a majority of the traits in our study, FA showed significant but weak heritabilities, with values falling within the 0.20-0.35 range. None of the traits taken separately demonstrated the effect of PME on FA to be significantly greater than zero. The composite score of FA tended to have greater heritability values than individual traits. One of them, obtained in principal components analysis, showed a significant PME effect, supporting the hypothesis that FA is a systemic property.

Analysis of Variance↗
PubMed2000

Estimating missing data: an iterative regression approach.

The problem of missing data is common in all fields of science. Various methods of estimating missing values in a dataset exist, such as deletion of cases, insertion of sample mean, and linear regression. Each approach presents problems inherent in the method itself or in the nature of the pattern of missing data. We report a method that (1) is more general in application and (2) provides better estimates than traditional approaches, such as one-step regression. The model is general in that it may be applied to singular matrices, such as small datasets or those that contain dummy or index variables. The strength of the model is that it builds a regression equation iteratively, using a bootstrap method. The precision of the regressed estimates of a variable increases as regressed estimates of the predictor variables improve. We illustrate this method with a set of measurements of European Upper Paleolithic and Mesolithic human postcranial remains, as well as a set of primate anthropometric data. First, simulation tests using the primate data set involved randomly turning 20% of the values to "missing". In each case, the first iteration produced significantly better estimates than other estimating techniques. Second, we applied our method to the incomplete set of human postcranial measurements. MISDAT estimates always perform better than replacement of missing data by means and better than classical multiple regression. As with classical multiple regression, MISDAT performs when squared multiple correlation values approach the reliability of the measurement to be estimated, e.g., above about 0. 8.

Animals↗
PubMed1990

The effects of dry ashing on the composition of human and animal bone.

Elemental analysis of archaeological bones, particularly for elements such as fluorine, strontium, and zinc, has been carried out for many years, with the aim of determining their age or relating their composition to diet. Bone samples are commonly dry ashed before analysis to remove organic material and render them more readily soluble. In this study, the recoveries of strontium, zinc, and nine other elements are reported for a range of ashing times and temperatures. Recoveries of sodium, potassium, fluorine, chlorine, bromine, and zinc are significantly affected by ashing under some conditions, but recoveries of strontium, calcium, magnesium, and manganese are not.

Activation Analysis↗
PubMed1978

Mineral analysis of ancient Peruvian hair.

Ancient Peruvian hair has been excavated from a series of archaeological sites on the Peruvian coast. After careful cleaning, examination by scanning electron microscopy revealed most of the samples to be in a state of preservation comparable to modern hair. No evidence of pathological conditions was observed. Trace metal composition was determined by atomic absorption and flame emission spectrophotometry and nitrogen by Kjeldahl analysis, producing the following results: (1) nitrogen is lost with time, while all other tested minerals except zinc and copper showed irregular increases; (2) relatively high chromium levels may indicate that diabetes was not present in the samples; and (3) no consistent trend in the ratio of calcium to strontium was found through time and across corresponding dietary shifts.

Adolescent↗
PubMed1975

Morphometric analysis of Cartesian coordinates of the human skull.

A method for locating the three dimensional coordinates of cranial landmarks with respect to the Frankfort, midsagittal, and coronal planes is presented. Sliding calipers were used to obtain the distances from left and right porion and apex to each landmark, except for a few points where spreading calipers are required. In the present example, 35 landmarks (for a total of 105 measurements) were located for each of 35 Peruvian precolumbian skulls. These distances were entered into a program (SKULL) which calculates the Cartesian coordinates of each landmark. The XYZ coordinates of each landmark contain all the information necessary for calculation of the distances between any two landmarks, and these distances may also be obtained as output from program SKULL, if desired (595 distances if all 35 landmarks are used). Reliability of the location of coordinates was determined by comparing computed distances among selected landmarks from program SKULL with traditional anthropometric measurements. Satisfactory agreements were found. Direct multivariate analysis of the coordinates of the landmarks produced insights not available in traditional multivariate analysis of conventional anthropometric measurements.

Adolescent↗