Biomedical subjects

R C Fleischer

Publications and source records attributed to R C Fleischer.

22 records · Page 2Linked to original sources

PubMed1996

RAPD analysis reveals low genetic variability in the endangered light-footed clapper rail.

Numbers of light-footed clapper rails Rallus longirostris levipes, an endangered bird inhabiting southern California salt marshes, have substantially declined from historic levels. RAPD (randomly amplified polymorphic DNA) analysis was employed to assess the genetic variability within and among four of the largest remaining light-footed clapper rail populations. A single, larger population of the endangered Yuma clapper rail Rallus longirostris yumanensis was used for comparison. A total of 325 RAPD primers were tested on DNA from a subset of five clapper rails composed of a single representative for each of the four light-footed clapper rail populations and a representative for the single Yuma clapper rail population. Of the 1338 amplified bands (loci) surveyed in these five representative birds, approximately 1% were polymorphic, indicating the level of differentiation across all loci is quite low. Nine primers yielding these 16 polymorphic bands were used to analyse 48 individuals from five populations. Five of these bands were polymorphic in both subspecies, six were polymorphic only within the light-footed clapper rails, and five were polymorphic only within the Yuma clapper rail samples. Considering the few bands that were polymorphic among the light-footed clapper rail populations, a surprisingly high level of population differentiation (GST = 0.28) was found. This is in accord with the results of AMOVA analyses which show that a fairly high percentage of the limited variability among the rails is due to either differences between subspecies or differences between the light-footed rail populations. Because inbreeding depression is suspected and overall genetic distances between populations are low, movement of light-footed clapper rails from larger populations into smaller ones might be considered as a management strategy. Employing RAPDs as one of a series of assays is useful in revealing the population structure of genetically depauperate species.

Analysis of Variance↗

PubMed1986

Relationships between elevation, reproduction and the hematocrit level of brown-headed cowbirds.

Hematocrit, furcular fat level and oviducal egg presence were determined for 267 brown-headed cowbirds (Molothrus ater) at eight sites ranging from 15 to 2390 m above sea level in California. Near the end of the breeding season males at a mid-elevation site (1250 m) possessed higher hematocrits than females, but there was no difference between yearling and adult males. Birds were bled during three 11-day periods beginning 1 May 1984 at one montane site (2075 m). The percentage of females with oviducal eggs increased significantly from 0 to 10 to 67% and the mean female hematocrit increased from 0.54 to 0.56 and then decreased significantly to 0.52. The hematocrit of males increased significantly from 0.54 to 0.57 and then remained level during the final period. Correlations were calculated between mean hematocrit and elevation for males (r = 0.94, N = 8 sites, P less than 0.001), females (r = 0.96, N = 7 sites, P less than 0.001) and juveniles (r = 0.99, N = 4 sites, P less than 0.01).

Acclimatization↗

PubMedDate not supplied

Allozymic heterozygosity and morphological variation in house sparrows.

Several reports have shown that greater heterozygosity (both between individuals and between populations) is associated with lower morphological variance and asymmetry. Most previous work concerned poikilothermic organisms (for example, fish, butterflies, lizards, shellfish, salamanders and plants). Reports concerning two homoiotherms gave conflicting results. The report by Handford on a songbird, Zonotrichia capensis, failed to support the relationship, although these results have been questioned in the literature. Handford suggested that the lack of relationship in Zonotrichia could indicate a fundamental difference between homoiotherms and poikilotherms, reflected in their apparent differences in heterozygosity. However, we report here on electrophoretic and morphometric studies on another songbird species (Passer domesticus), in which the relationship appears to be upheld. We find consistently, among four locality samples, that the class of individuals of greatest allozyme heterozygosity nearly always exhibits the lowest multivariate morphological variance, and the class of greatest homozygosity nearly always exhibits the highest.

Alleles↗

PubMedDate not supplied

Cloned microsatellite repeats differ between 4-base restriction endonucleases.

Simple sequence repeat (SSR) loci are an important marker type for population genetic studies despite the limitation that development of novel loci requires construction and screening of genomic DNA libraries. The common practice of size fractioning genomic DNA before cloning could lead to differential representation of SSR loci within genomic libraries. In addition, linkage mapping studies have shown that small numbers of SSR markers are not randomly distributed within the genomes from which they are isolated. From attempts to clone five SSR repeat sequences in two wild plant species we show that the numbers and repeat type of potential SSR markers depend on the restriction endonuclease used to sample the genome when constructing DNA libraries. This observation is consistent with unequal sampling of the genome by different restriction enzymes. However, as a group the five SSR repeat sequences are not associated with a given restriction enzyme, suggesting they are not clumped within the genome. Use of multiple restriction enzymes to construct DNA libraries may help ensure that cloned SSR loci are drawn from diverse locations in the genome, helping to meet the assumption of randomly located marker loci required for population genetic inferences.

Arabidopsis↗