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R Freyer

Publications and source records attributed to R Freyer.

At least 19 recordsLinked to original sources
PubMed1998

Fast image reconstruction for optical absorption tomography in media with radially symmetric boundaries.

In this paper we present a reconstruction algorithm to invert the linearized problem in optical absorption tomography for objects with radially symmetric boundaries. This is a relevant geometry for functional volume imaging of body regions that are sensitive to ionizing radiation, e.g., breast and testis. From the principles of diffuse light propagation in scattering media we derive the governing integral equations describing the effects of absorption variations on changes in the measurement data. Expansion of these equations into a Neumann series and truncation of higher-order terms yields the linearized forward imaging operator. For the proposed geometry we utilize an invariance property of this operator, which greatly reduces the problem dimensionality. This allows us to compute the inverse by singular value decomposition and consequently to apply regularization techniques based on the knowledge of the singular value spectrum. The inversion algorithm is highly efficient computing slice images as fast as convolution-backprojection algorithms in computed tomography (CT). To demonstrate the capacity of the inversion scheme we present reconstruction results for synthetic and phantom measurement data.

Algorithms↗
PubMed1997

Occurrence of plastid RNA editing in all major lineages of land plants.

RNA editing changes posttranscriptionally single nucleotides in chloroplast-encoded transcripts. Although much work has been done on mechanistic and functional aspects of plastid editing, little is known about evolutionary aspects of this RNA processing step. To gain a better understanding of the evolution of RNA editing in plastids, we have investigated the editing patterns in ndhB and rbcL transcripts from various species comprising all major groups of land plants. Our results indicate that RNA editing occurs in plastids of bryophytes, fern allies, true ferns, gymnosperms, and angiosperms. Both editing frequencies and editing patterns show a remarkable degree of interspecies variation. Furthermore, we have found that neither plastid editing frequencies nor the editing pattern of a specific transcript correlate with the phylogenetic tree of the plant kingdom. The poor evolutionary conservation of editing sites among closely related species as well as the occurrence of single species-specific editing sites suggest that the differences in the editing patterns and editing frequencies are probably due both to independent loss and to gain of editing sites. In addition, our results indicate that RNA editing is a relatively ancient process that probably predates the evolution of land plants. This supposition is in good agreement with the phylogenetic data obtained for plant mitochondrial RNA editing, thus providing additional evidence for common evolutionary roots of the two plant organellar editing systems.

Amino Acid Sequence↗